Experiment set7IT035 for Herbaspirillum seropedicae SmR1

Compare to:

L-Malic acid carbon source and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS01295 +3.3 26.0 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
HSERO_RS10395 +1.9 2.8 phosphate transport regulator compare
HSERO_RS01825 +1.9 7.7 RNA pyrophosphohydrolase compare
HSERO_RS08990 +1.5 4.2 heat shock protein 90 compare
HSERO_RS10455 +1.5 4.5 aminotransferase compare
HSERO_RS04290 +1.5 7.6 DNA-binding protein compare
HSERO_RS14765 +1.4 1.7 membrane protein compare
HSERO_RS16485 +1.3 4.9 tRNA pseudouridine synthase A compare
HSERO_RS20370 +1.3 4.3 ABC transporter ATP-binding protein compare
HSERO_RS06170 +1.3 1.8 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS19210 +1.2 7.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS01990 +1.2 6.6 shikimate 5-dehydrogenase compare
HSERO_RS18365 +1.1 5.3 hypothetical protein compare
HSERO_RS04240 +1.1 4.6 C4-dicarboxylate ABC transporter compare
HSERO_RS10400 +1.1 5.4 inorganic phosphate transporter compare
HSERO_RS08405 +1.1 0.5 membrane protein compare
HSERO_RS12395 +1.1 6.1 TetR family transcriptional regulator compare
HSERO_RS04245 +1.0 3.4 C4-dicarboxylate ABC transporter permease compare
HSERO_RS12850 +1.0 5.5 LuxR family transcriptional regulator compare
HSERO_RS15070 +1.0 1.2 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS00805 +1.0 1.7 preprotein translocase subunit SecB compare
HSERO_RS04190 +0.9 3.9 DNA mismatch repair protein compare
HSERO_RS08605 +0.9 3.1 Hsp33 chaperonin compare
HSERO_RS19810 +0.9 7.6 excinuclease ABC subunit A compare
HSERO_RS06175 +0.9 6.0 queuine tRNA-ribosyltransferase compare
HSERO_RS13480 +0.9 4.5 C4-dicarboxylate ABC transporter compare
HSERO_RS19265 +0.9 1.4 LysR family transcriptional regulator compare
HSERO_RS12860 +0.9 5.5 histidine kinase compare
HSERO_RS03420 +0.8 1.7 cytochrome B561 compare
HSERO_RS08075 +0.8 1.4 ferredoxin compare
HSERO_RS15840 +0.8 4.9 excinuclease ABC subunit B compare
HSERO_RS05910 +0.8 1.6 phosphoribosylglycinamide formyltransferase compare
HSERO_RS05440 +0.8 0.8 hypothetical protein compare
HSERO_RS04250 +0.8 5.6 C4-dicarboxylate ABC transporter permease compare
HSERO_RS23885 +0.8 6.7 XRE family transcriptional regulator compare
HSERO_RS20980 +0.8 2.9 oxidoreductase compare
HSERO_RS19285 +0.7 4.3 long-chain fatty acid--CoA ligase compare
HSERO_RS13935 +0.7 2.7 DNAase compare
HSERO_RS13475 +0.7 2.8 C4-dicarboxylate ABC transporter compare
HSERO_RS13930 +0.7 4.9 competence protein ComEC compare
HSERO_RS20250 +0.7 0.5 large conductance mechanosensitive channel protein MscL compare
HSERO_RS17340 +0.7 6.0 potassium transporter compare
HSERO_RS23505 +0.7 2.9 transcriptional regulator compare
HSERO_RS05035 +0.7 2.1 glyoxalase compare
HSERO_RS18935 +0.7 4.4 LysR family transcriptional regulator compare
HSERO_RS02350 +0.7 4.3 diadenosine tetraphosphatase compare
HSERO_RS09160 +0.7 2.7 amidase compare
HSERO_RS09660 +0.7 1.3 ribonuclease III compare
HSERO_RS19600 +0.7 4.3 transposase compare
HSERO_RS20995 +0.7 4.0 NAD dependent epimerase/dehydratase compare
HSERO_RS11315 +0.7 1.6 histidine kinase compare
HSERO_RS10675 +0.7 3.6 diguanylate cyclase compare
HSERO_RS07175 +0.6 2.4 hypothetical protein compare
HSERO_RS23550 +0.6 2.9 ABC transporter ATP-binding protein compare
HSERO_RS05330 +0.6 3.0 glucose dehydrogenase compare
HSERO_RS09875 +0.6 1.7 hypothetical protein compare
HSERO_RS18875 +0.6 1.2 ATPase compare
HSERO_RS16305 +0.6 1.5 hypothetical protein compare
HSERO_RS20815 +0.6 3.1 tRNA methyltransferase compare
HSERO_RS21005 +0.6 4.2 asparagine synthase compare
HSERO_RS06015 +0.6 1.5 hisitidine kinase compare
HSERO_RS02425 +0.6 3.9 transcriptional activator compare
HSERO_RS11590 +0.6 1.7 hypothetical protein compare
HSERO_RS14015 +0.6 2.2 hisitidine kinase compare
HSERO_RS18775 +0.6 2.2 phage killer protein compare
HSERO_RS10600 +0.6 3.6 diguanylate phosphodiesterase compare
HSERO_RS23735 +0.6 4.1 phosphodiesterase compare
HSERO_RS22355 +0.6 2.1 urea carboxylase compare
HSERO_RS14260 +0.6 2.0 ferredoxin compare
HSERO_RS21035 +0.6 1.7 hypothetical protein compare
HSERO_RS03925 +0.6 1.5 hypothetical protein compare
HSERO_RS02450 +0.6 1.7 arsenate reductase compare
HSERO_RS09650 +0.6 1.4 elongation factor 4 compare
HSERO_RS09090 +0.6 1.5 hypothetical protein compare
HSERO_RS10135 +0.6 1.4 chemotaxis protein CheZ compare
HSERO_RS13800 +0.5 2.7 glycosyl transferase family 1 compare
HSERO_RS11490 +0.5 3.2 D-ribose ABC transporter, permease component RbsC (from data) compare
HSERO_RS22325 +0.5 2.1 hypothetical protein compare
HSERO_RS04135 +0.5 1.0 amidohydrolase compare
HSERO_RS08700 +0.5 1.1 hypothetical protein compare
HSERO_RS21000 +0.5 3.1 aminotransferase DegT compare
HSERO_RS19135 +0.5 1.1 exodeoxyribonuclease compare
HSERO_RS05980 +0.5 1.3 aldehyde dehydrogenase compare
HSERO_RS02050 +0.5 1.3 tRNA-dihydrouridine synthase B compare
HSERO_RS07410 +0.5 3.1 LysR family transcriptional regulator compare
HSERO_RS20790 +0.5 1.3 cytochrome B559 subunit alpha compare
HSERO_RS12800 +0.5 2.1 aspartate aminotransferase compare
HSERO_RS12015 +0.5 0.9 molecular chaperone DnaK compare
HSERO_RS16685 +0.5 1.8 lactate dehydrogenase compare
HSERO_RS09440 +0.5 3.3 exopolyphosphatase compare
HSERO_RS14325 +0.5 2.9 hypothetical protein compare
HSERO_RS02525 +0.5 2.0 glutamine amidotransferase compare
HSERO_RS09325 +0.5 3.9 hypothetical protein compare
HSERO_RS11585 +0.5 1.6 membrane protein compare
HSERO_RS14395 +0.5 1.0 oxygen-binding protein compare
HSERO_RS20985 +0.5 0.8 serine acetyltransferase compare
HSERO_RS04220 +0.5 2.8 epoxyqueuosine reductase compare
HSERO_RS02760 +0.5 0.9 hypothetical protein compare
HSERO_RS23720 +0.5 3.3 histidine kinase compare
HSERO_RS00810 +0.5 1.3 glutaredoxin compare
HSERO_RS14830 +0.5 3.0 RNA polymerase sigma factor RpoS compare
HSERO_RS02610 +0.5 1.4 hypothetical protein compare
HSERO_RS11855 +0.5 0.9 hypothetical protein compare
HSERO_RS13620 +0.5 2.2 diguanylate cyclase compare
HSERO_RS07625 +0.5 1.2 tryptophanyl-tRNA synthetase compare
HSERO_RS11825 +0.5 2.8 hypothetical protein compare
HSERO_RS03105 +0.5 2.5 anti-sigma factor antagonist compare
HSERO_RS05165 +0.5 2.9 galactose-1-epimerase compare
HSERO_RS16105 +0.5 1.6 histidine kinase compare
HSERO_RS00965 +0.5 0.8 trehalose-phosphatase compare
HSERO_RS11435 +0.5 2.0 IclR family transcriptional regulator compare
HSERO_RS09635 +0.5 2.0 transcriptional regulator compare
HSERO_RS11985 +0.5 2.5 permease compare
HSERO_RS21040 +0.5 2.5 3-oxoacyl-ACP synthase compare
HSERO_RS23765 +0.5 2.0 hypothetical protein compare
HSERO_RS22020 +0.5 1.5 membrane protein compare
HSERO_RS18510 +0.5 1.7 thioesterase compare
HSERO_RS14005 +0.5 2.7 carboxylesterase compare
HSERO_RS14045 +0.5 2.0 aldolase compare
HSERO_RS14425 +0.5 1.2 hypothetical protein compare
HSERO_RS14825 +0.4 2.8 23S rRNA methyltransferase compare
HSERO_RS02740 +0.4 1.7 hypothetical protein compare
HSERO_RS15095 +0.4 1.6 AraC family transcriptional regulator compare
HSERO_RS02430 +0.4 1.9 sulfurtransferase compare
HSERO_RS22000 +0.4 2.1 short-chain dehydrogenase compare
HSERO_RS09910 +0.4 1.0 integration host factor subunit alpha compare
HSERO_RS08645 +0.4 3.6 RNA polymerase sigma70 factor compare
HSERO_RS22175 +0.4 0.8 hypothetical protein compare
HSERO_RS11170 +0.4 0.8 ABC transporter ATP-binding protein compare
HSERO_RS16835 +0.4 2.4 phosphatidylglycerophosphatase compare
HSERO_RS13880 +0.4 0.8 hypothetical protein compare
HSERO_RS07710 +0.4 1.2 hypothetical protein compare
HSERO_RS16295 +0.4 1.4 LysR family transcriptional regulator compare
HSERO_RS18045 +0.4 0.6 hypothetical protein compare
HSERO_RS16695 +0.4 2.2 hypothetical protein compare
HSERO_RS10665 +0.4 2.7 coproporphyrinogen III oxidase compare
HSERO_RS09320 +0.4 3.5 ErfK/YbiS/YcfS/YnhG family protein compare
HSERO_RS21080 +0.4 2.3 glycosyl transferase compare
HSERO_RS06290 +0.4 3.5 methyl-accepting chemotaxis protein compare
HSERO_RS01425 +0.4 1.3 DNA-binding protein compare
HSERO_RS01535 +0.4 2.3 phosphohydrolase with GAF sensor compare
HSERO_RS15350 +0.4 1.6 membrane protein compare
HSERO_RS11625 +0.4 1.1 dioxygenase compare
HSERO_RS03480 +0.4 1.7 NAD(P) transhydrogenase subunit alpha compare
HSERO_RS19535 +0.4 1.1 nucleotide-binding protein compare
HSERO_RS07015 +0.4 1.8 isocitrate dehydrogenase compare
HSERO_RS07025 +0.4 1.7 ATP-dependent Clp protease ClpS compare
HSERO_RS07460 +0.4 1.0 hypothetical protein compare
HSERO_RS10490 +0.4 1.4 gluconate transporter compare
HSERO_RS12095 +0.4 1.7 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
HSERO_RS13065 +0.4 1.7 biopolymer transporter compare
HSERO_RS11240 +0.4 2.5 mannosyltransferase compare
HSERO_RS18685 +0.4 0.7 hypothetical protein compare
HSERO_RS08985 +0.4 1.7 hypothetical protein compare
HSERO_RS21635 +0.4 1.9 DNA-directed DNA polymerase compare
HSERO_RS16110 +0.4 1.7 hypothetical protein compare
HSERO_RS10620 +0.4 1.9 membrane protein compare
HSERO_RS16665 +0.4 3.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
HSERO_RS10530 +0.4 2.3 RND transporter compare
HSERO_RS08015 +0.4 1.4 MerR family transcriptional regulator compare
HSERO_RS21480 +0.4 0.5 transcriptional regulator compare
HSERO_RS09085 +0.4 1.1 LysR family transcriptional regulator compare
HSERO_RS19205 +0.4 2.5 hypothetical protein compare
HSERO_RS17905 +0.4 2.5 tRNA-dihydrouridine synthase A compare
HSERO_RS06630 +0.4 1.8 alpha/beta hydrolase compare
HSERO_RS08030 +0.4 2.1 von Willebrand factor A compare
HSERO_RS03715 +0.4 2.3 type VI secretion protein compare
HSERO_RS20705 +0.4 1.6 cobyrinic acid a,c-diamide synthase compare
HSERO_RS19730 +0.4 1.9 short-chain dehydrogenase compare
HSERO_RS12715 +0.4 1.4 hypothetical protein compare
HSERO_RS22155 +0.4 1.3 hypothetical protein compare
HSERO_RS23655 +0.4 1.0 phosphonate ABC transporter permease compare
HSERO_RS21265 +0.4 1.6 transcriptional regulator compare
HSERO_RS10785 +0.4 1.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS23500 +0.4 1.9 MFS transporter permease compare
HSERO_RS01030 +0.4 1.4 tail-like protein compare
HSERO_RS09185 +0.4 2.4 isoaspartyl peptidase compare
HSERO_RS05810 +0.4 1.0 sulfurtransferase compare
HSERO_RS03145 +0.4 2.5 poly(A) polymerase compare
HSERO_RS08690 +0.4 1.2 alpha/beta hydrolase compare
HSERO_RS13590 +0.4 1.5 D-galactose-1-dehydrogenase compare
HSERO_RS07395 +0.4 1.1 aldose 1-epimerase compare
HSERO_RS16150 +0.4 2.6 arginyl-tRNA-protein transferase compare
HSERO_RS02785 +0.4 1.1 hypothetical protein compare
HSERO_RS06720 +0.4 1.2 Rieske (2Fe-2S) protein compare
HSERO_RS10650 +0.4 1.6 hypothetical protein compare
HSERO_RS01105 +0.4 1.2 hypothetical protein compare
HSERO_RS03805 +0.4 1.9 hypothetical protein compare
HSERO_RS05150 +0.4 1.7 galactonate dehydratase compare
HSERO_RS15795 +0.4 2.3 galactaro-1,5-lactonase (from data) compare
HSERO_RS22600 +0.4 0.9 transcriptional regulator compare
HSERO_RS15635 +0.4 1.2 hypothetical protein compare
HSERO_RS08150 +0.4 1.1 phasin family protein compare
HSERO_RS16450 +0.4 1.6 colicin V production protein compare
HSERO_RS10595 +0.4 1.9 competence protein ComJ compare
HSERO_RS07800 +0.4 1.9 transcriptional regulator compare
HSERO_RS23345 +0.4 2.6 16S rRNA methyltransferase compare
HSERO_RS17330 +0.4 2.9 pseudouridine synthase compare
HSERO_RS07600 +0.4 1.7 threonine-phosphate decarboxylase compare
HSERO_RS12740 +0.4 1.3 histone acetyltransferase HPA2, GnaT family, acetyltransferase compare


Specific Phenotypes

For 29 genes in this experiment

For nitrogen fixation L-Malic acid in Herbaspirillum seropedicae SmR1

For nitrogen fixation L-Malic acid across organisms