Experiment set7IT034 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cesium chloride 0.00078125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.2 -5.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -5.2 -7.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4352 -3.9 -3.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2574 -3.6 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5014 -2.9 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3303 -2.8 -6.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_6140 -2.6 -1.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4162 -2.2 -3.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2217 -2.1 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5508 -2.1 -2.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4416 -2.0 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_3908 -2.0 -7.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5527 -2.0 -2.6 Cold shock protein CspC compare
Pf6N2E2_3351 -1.9 -5.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2646 -1.9 -1.6 FIG00953416: hypothetical protein compare
Pf6N2E2_4579 -1.7 -2.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4072 -1.7 -5.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3461 -1.7 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3134 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_5536 -1.6 -2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_238 -1.6 -2.0 hypothetical protein compare
Pf6N2E2_4418 -1.6 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5242 -1.6 -2.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1032 -1.6 -1.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3826 -1.5 -4.0 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5156 -1.5 -3.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_33 -1.5 -3.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2218 -1.4 -3.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4908 -1.4 -5.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2755 -1.4 -2.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5430 -1.4 -6.9 Transglycosylase, Slt family compare
Pf6N2E2_2126 -1.4 -5.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2311 -1.4 -6.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2127 -1.3 -3.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1821 -1.3 -2.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3661 -1.3 -3.9 hypothetical protein compare
Pf6N2E2_2310 -1.2 -7.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1920 -1.2 -3.2 Rubredoxin compare
Pf6N2E2_5155 -1.2 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4638 -1.2 -2.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2480 -1.2 -1.8 FIG00957636: hypothetical protein compare
Pf6N2E2_746 -1.1 -2.1 FIG00958097: hypothetical protein compare
Pf6N2E2_3607 -1.1 -5.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5338 -1.1 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2827 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_4204 -1.1 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4928 -1.1 -1.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_146 -1.0 -2.3 Transcriptional regulator, MarR family compare
Pf6N2E2_5339 -1.0 -4.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3825 -1.0 -3.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_6022 -1.0 -2.3 StbE replicon stabilization toxin compare
Pf6N2E2_4075 -1.0 -3.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2313 -1.0 -2.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5068 -1.0 -6.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2984 -1.0 -2.6 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3293 -1.0 -1.9 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_4454 -1.0 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_624 -1.0 -4.3 hypothetical protein PA3071 compare
Pf6N2E2_3534 -1.0 -2.5 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5739 -1.0 -1.1 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2285 -0.9 -1.3 FIG00954079: hypothetical protein compare
Pf6N2E2_5086 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_4369 -0.9 -1.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2181 -0.9 -1.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2317 -0.9 -2.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_156 -0.9 -1.6 Carbon storage regulator compare
Pf6N2E2_2320 -0.9 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4886 -0.9 -6.6 Catalase (EC 1.11.1.6) compare
Pf6N2E2_2438 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_5316 -0.9 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5727 -0.9 -3.2 FIG00955360: hypothetical protein compare
Pf6N2E2_4159 -0.9 -2.4 Cytochrome c4 compare
Pf6N2E2_3219 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_2318 -0.9 -4.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_629 -0.9 -2.9 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_3763 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_3460 -0.9 -0.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5261 -0.9 -1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_3841 -0.9 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_1246 -0.8 -1.5 FIG00961372: hypothetical protein compare
Pf6N2E2_663 -0.8 -3.0 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_5986 -0.8 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5111 -0.8 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_660 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_1935 -0.8 -1.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5869 -0.8 -1.9 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_4803 -0.8 -0.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3130 -0.8 -2.6 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_4074 -0.8 -6.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_441 -0.8 -1.9 FIG00958773: hypothetical protein compare
Pf6N2E2_1545 -0.8 -2.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2527 -0.8 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1288 -0.8 -1.8 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2477 -0.8 -0.9 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_3060 -0.8 -1.9 Outer membrane protein H precursor compare
Pf6N2E2_5150 -0.8 -3.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1972 -0.8 -1.8 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1715 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_2795 -0.8 -1.8 putative exported protein compare
Pf6N2E2_2293 -0.7 -3.2 COG0488: ATPase components of ABC transporters with duplicated ATPase domains compare
Pf6N2E2_3537 -0.7 -3.1 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_144 -0.7 -6.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5337 -0.7 -2.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1046 -0.7 -2.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4599 -0.7 -2.0 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_724 -0.7 -0.6 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_1293 -0.7 -2.0 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_3656 -0.7 -3.5 Probable transcription regulator Mig-14 compare
Pf6N2E2_3658 -0.7 -3.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1758 -0.7 -1.2 Transcriptional regulator, MarR family compare
Pf6N2E2_4372 -0.7 -2.9 FIG00460773: hypothetical protein compare
Pf6N2E2_2010 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_2012 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_178 -0.7 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1182 -0.7 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_3655 -0.7 -5.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2074 -0.7 -1.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2473 -0.7 -0.9 Major outer membrane lipoprotein I compare
Pf6N2E2_2919 -0.7 -1.7 FIG00955830: hypothetical protein compare
Pf6N2E2_4614 -0.7 -2.2 twitching motility protein PilH compare
Pf6N2E2_687 -0.7 -1.1 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_4773 -0.7 -0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_871 -0.7 -3.3 sensor histidine kinase compare
Pf6N2E2_145 -0.7 -4.5 putative exported protein compare
Pf6N2E2_3072 -0.7 -3.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_1696 -0.7 -2.2 Alkanesulfonates-binding protein compare
Pf6N2E2_1617 -0.7 -1.0 COG2199: FOG: GGDEF domain compare
Pf6N2E2_5999 -0.7 -2.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf6N2E2_1611 -0.6 -1.7 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_3876 -0.6 -2.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2459 -0.6 -1.1 Organic hydroperoxide resistance protein compare
Pf6N2E2_953 -0.6 -1.8 FIG00958851: hypothetical protein compare
Pf6N2E2_4918 -0.6 -1.7 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2880 -0.6 -1.8 FIG00959696: hypothetical protein compare
Pf6N2E2_5520 -0.6 -2.7 Sensory box histidine kinase compare
Pf6N2E2_2693 -0.6 -1.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4612 -0.6 -2.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5534 -0.6 -2.7 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3300 -0.6 -2.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4540 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_2112 -0.6 -2.1 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_384 -0.6 -1.0 Glycine cleavage system transcriptional activator compare
Pf6N2E2_3589 -0.6 -1.6 Lysine decarboxylase family compare
Pf6N2E2_4531 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_3282 -0.6 -1.0 FIG005080: Possible exported protein compare
Pf6N2E2_4381 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_122 -0.6 -0.8 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_1860 -0.6 -2.0 Ferredoxin, 2Fe-2S compare
Pf6N2E2_1917 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_1701 -0.6 -2.0 ABC transporter ATP-binding protein compare
Pf6N2E2_3095 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_2967 -0.6 -0.9 Cold shock protein CspA compare
Pf6N2E2_1153 -0.6 -1.9 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_1044 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_5761 -0.6 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_4092 -0.6 -1.7 FIG00954395: hypothetical protein compare
Pf6N2E2_3665 -0.6 -0.6 serine/threonine protein kinase compare
Pf6N2E2_4197 -0.6 -3.3 DNA recombination and repair protein RecF compare
Pf6N2E2_3179 -0.6 -1.3 FIG021952: putative membrane protein compare
Pf6N2E2_2018 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_712 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_6064 -0.6 -2.8 2-methylaconitate isomerase compare
Pf6N2E2_3199 -0.6 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_1450 -0.6 -0.9 FIG00960438: hypothetical protein compare
Pf6N2E2_4168 -0.6 -2.9 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_2213 -0.6 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2031 -0.6 -2.9 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_1916 -0.6 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_4494 -0.6 -2.3 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3088 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_621 -0.6 -3.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3539 -0.6 -1.1 FIG00955840: hypothetical protein compare
Pf6N2E2_6093 -0.5 -1.7 hypothetical protein compare
Pf6N2E2_895 -0.5 -2.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_4171 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_28 -0.5 -1.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_3847 -0.5 -1.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5633 -0.5 -4.2 Aromatic amino acid transport protein AroP compare
Pf6N2E2_5943 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_3283 -0.5 -2.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_3192 -0.5 -1.8 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_5411 -0.5 -2.2 FIG00955494: hypothetical protein compare
Pf6N2E2_3118 -0.5 -2.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2526 -0.5 -2.3 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_5312 -0.5 -1.4 FIG00964214: hypothetical protein compare
Pf6N2E2_728 -0.5 -1.7 Nitrate/nitrite transporter compare
Pf6N2E2_2411 -0.5 -2.4 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Pf6N2E2_1317 -0.5 -1.9 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_3786 -0.5 -1.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_2681 -0.5 -2.0 3-phosphoglycerate kinase compare
Pf6N2E2_5328 -0.5 -1.8 FIG00958649: hypothetical protein compare
Pf6N2E2_3457 -0.5 -2.6 Uncharacterized protein YfiR precursor compare
Pf6N2E2_4594 -0.5 -1.6 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_1691 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_4732 -0.5 -1.1 hypothetical protein compare
Pf6N2E2_3494 -0.5 -1.8 Acyl dehydratase compare
Pf6N2E2_3641 -0.5 -1.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2121 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_463 -0.5 -2.3 Transcriptional regulatory protein RstA compare
Pf6N2E2_4073 -0.5 -2.1 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Cesium chloride across organisms