Experiment set7IT033 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.3 -4.3 Tol-Pal system protein TolB compare
IAI47_13700 -5.0 -3.5 Tol-Pal system protein TolQ compare
IAI47_09040 -4.5 -2.7 NAD-dependent epimerase compare
IAI47_17000 -4.4 -10.3 lipoprotein NlpI compare
IAI47_17965 -4.4 -18.7 glucose-6-phosphate isomerase compare
IAI47_00655 -4.1 -6.7 glycosyltransferase family 4 protein compare
IAI47_08085 -3.8 -3.7 helix-turn-helix domain-containing protein compare
IAI47_10845 -3.8 -5.2 major outer membrane lipoprotein compare
IAI47_13415 -3.5 -16.4 L,D-transpeptidase family protein compare
IAI47_12275 -3.5 -16.2 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_08700 -3.4 -4.1 RNA chaperone ProQ compare
IAI47_18480 -3.4 -12.2 lipid III flippase WzxE compare
IAI47_07025 -3.4 -9.4 glycosyltransferase family 4 protein compare
IAI47_12280 -3.3 -10.8 glucan biosynthesis protein G compare
IAI47_13885 -3.2 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_08705 -3.2 -4.4 carboxy terminal-processing peptidase compare
IAI47_16085 -3.2 -2.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_00760 -3.1 -6.3 envelope stress response regulator transcription factor CpxR compare
IAI47_13695 -3.0 -1.0 colicin uptake protein TolR compare
IAI47_15635 -2.9 -3.1 RNA polymerase-binding protein DksA compare
IAI47_05155 -2.8 -17.8 polyphosphate kinase 1 compare
IAI47_09055 -2.8 -11.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_00780 -2.8 -3.8 6-phosphofructokinase compare
IAI47_12470 -2.7 -13.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_20595 -2.7 -5.0 GhoT/OrtT family toxin compare
IAI47_04865 -2.6 -2.7 SoxR-reducing system protein RseC compare
IAI47_18470 -2.6 -13.5 ECA oligosaccharide polymerase compare
IAI47_12880 -2.6 -17.1 formate C-acetyltransferase compare
IAI47_13690 -2.5 -0.8 cell envelope integrity protein TolA compare
IAI47_15485 -2.5 -1.4 molecular chaperone Skp compare
IAI47_18055 -2.5 -6.4 DNA-binding protein HU-alpha compare
IAI47_17155 -2.4 -9.9 calcium/sodium antiporter compare
IAI47_05070 -2.4 -0.8 outer membrane protein assembly factor BamB compare
IAI47_12885 -2.3 -9.0 pyruvate formate lyase 1-activating protein compare
IAI47_09580 -2.3 -3.8 FNR family transcription factor compare
IAI47_00870 -2.3 -1.1 50S ribosomal protein L31 compare
IAI47_18400 -2.3 -2.2 tyrosine recombinase XerC compare
IAI47_13065 -2.1 -2.2 DUF1418 family protein compare
IAI47_17215 -2.1 -1.2 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13625 -2.1 -8.1 CDF family zinc transporter ZitB compare
IAI47_18530 -2.1 -3.6 thioredoxin TrxA compare
IAI47_03550 -2.0 -12.5 membrane-bound lytic murein transglycosylase MltC compare
IAI47_12645 -2.0 -4.4 porin OmpA compare
IAI47_17020 -2.0 -3.0 30S ribosome-binding factor RbfA compare
IAI47_07450 -1.9 -2.9 winged helix-turn-helix domain-containing protein compare
IAI47_07030 -1.9 -5.8 HAD family hydrolase compare
IAI47_12925 -1.9 -3.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_04300 -1.9 -6.6 recombinase RecA compare
IAI47_08450 -1.9 -2.6 Holliday junction branch migration DNA helicase RuvB compare
IAI47_04110 -1.9 -15.0 two-component sensor histidine kinase BarA compare
IAI47_00300 -1.9 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_17005 -1.8 -5.2 polyribonucleotide nucleotidyltransferase compare
IAI47_00670 -1.8 -12.6 sugar glycosyltransferase compare
IAI47_05035 -1.8 -3.0 nucleoside-diphosphate kinase compare
IAI47_03375 -1.8 -8.5 peptide chain release factor 3 compare
IAI47_03640 -1.8 -11.6 glycosyltransferase compare
IAI47_17120 -1.8 -3.6 BolA family iron metabolism protein IbaG compare
IAI47_00465 -1.8 -2.9 ribosome-dependent GTPase TypA compare
IAI47_05425 -1.8 -4.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_03645 -1.7 -11.5 O-antigen ligase family protein compare
IAI47_14075 -1.7 -1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_21600 -1.7 -4.8 EamA family transporter compare
IAI47_11625 -1.7 -2.0 DUF1311 domain-containing protein compare
IAI47_10520 -1.7 -2.0 pyridoxamine 5'-phosphate oxidase compare
IAI47_06565 -1.7 -1.7 YejL family protein compare
IAI47_21595 -1.7 -9.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_09360 -1.6 -1.1 peptide ABC transporter ATP-binding protein SapF compare
IAI47_07490 -1.6 -2.4 DNA-binding protein compare
IAI47_06245 -1.6 -3.2 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_08680 -1.6 -6.4 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_18520 -1.5 -9.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_00675 -1.5 -9.9 glycosyltransferase family 9 protein compare
IAI47_00940 -1.5 -8.7 HTH-type transcriptional repressor FabR compare
IAI47_00110 -1.5 -4.6 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_16420 -1.5 -9.5 LacI family DNA-binding transcriptional regulator compare
IAI47_18410 -1.5 -3.8 diaminopimelate epimerase compare
IAI47_01000 -1.4 -10.4 HTH-type transcriptional regulator HdfR compare
IAI47_01475 -1.4 -5.5 MurR/RpiR family transcriptional regulator compare
IAI47_18415 -1.4 -3.5 lipoprotein compare
IAI47_11450 -1.4 -3.8 ankyrin repeat domain-containing protein compare
IAI47_04335 -1.4 -2.9 tRNA-Arg compare
IAI47_04120 -1.4 -9.7 GTP diphosphokinase compare
IAI47_11995 -1.4 -4.5 beta-N-acetylhexosaminidase compare
IAI47_07480 -1.4 -2.0 hypothetical protein compare
IAI47_07905 -1.4 -0.7 Arc family DNA-binding protein compare
IAI47_04775 -1.4 -2.1 SIR2 family protein compare
IAI47_18830 -1.4 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13950 -1.3 -1.3 PhoH family protein compare
IAI47_09305 -1.3 -2.6 cyclic di-GMP phosphodiesterase compare
IAI47_03820 -1.3 -2.6 site-specific tyrosine recombinase XerD compare
IAI47_12435 -1.3 -2.7 hypothetical protein compare
IAI47_02260 -1.3 -5.0 Zn(2+)-responsive transcriptional regulator compare
IAI47_08445 -1.3 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_11415 -1.3 -1.1 hypothetical protein compare
IAI47_00375 -1.3 -9.4 ribose operon transcriptional repressor RbsR compare
IAI47_07525 -1.3 -2.4 conjugal transfer protein TraD compare
IAI47_04695 -1.2 -4.7 hypothetical protein compare
IAI47_11375 -1.2 -1.1 hypothetical protein compare
IAI47_07350 -1.2 -0.7 hypothetical protein compare
IAI47_07485 -1.2 -2.6 DUF4756 family protein compare
IAI47_07180 -1.2 -4.2 DUF496 family protein compare
IAI47_12930 -1.2 -2.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_07355 -1.2 -4.3 winged helix-turn-helix domain-containing protein compare
IAI47_17165 -1.2 -6.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_09750 -1.2 -5.2 ROK family transcriptional regulator compare
IAI47_06915 -1.1 -6.3 outer membrane assembly protein AsmA compare
IAI47_00500 -1.1 -7.7 ATP-dependent DNA helicase RecG compare
IAI47_20995 -1.1 -2.3 hypothetical protein compare
IAI47_12305 -1.1 -3.6 hypothetical protein compare
IAI47_17235 -1.1 -6.6 stringent starvation protein A compare
IAI47_12565 -1.1 -6.8 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_08625 -1.1 -2.8 hypothetical protein compare
IAI47_19825 -1.1 -4.7 EAL domain-containing protein compare
IAI47_04830 -1.1 -3.8 autonomous glycyl radical cofactor GrcA compare
IAI47_10840 -1.1 -2.1 pyruvate kinase PykF compare
IAI47_13725 -1.1 -3.7 cytochrome ubiquinol oxidase subunit I compare
IAI47_04895 -1.1 -2.9 pyridoxine 5'-phosphate synthase compare
IAI47_03615 -1.1 -5.2 glutathione synthase compare
IAI47_06455 -1.0 -3.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_11420 -1.0 -1.5 hypothetical protein compare
IAI47_10725 -1.0 -1.5 DUF1656 domain-containing protein compare
IAI47_01545 -1.0 -4.8 cell division ATP-binding protein FtsE compare
IAI47_01650 -1.0 -6.4 gluconate operon transcriptional repressor GntR compare
IAI47_16560 -1.0 -5.1 hypothetical protein compare
IAI47_12865 -1.0 -5.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_16195 -1.0 -5.7 transaldolase compare
IAI47_03680 -1.0 -4.9 transketolase compare
IAI47_05090 -1.0 -2.3 hypothetical protein compare
IAI47_06120 -1.0 -2.4 YfcZ/YiiS family protein compare
IAI47_12920 -1.0 -2.3 thioredoxin-disulfide reductase compare
IAI47_07005 -1.0 -2.8 glycosyltransferase family 4 protein compare
IAI47_04800 -1.0 -0.8 RnfH family protein compare
IAI47_07455 -0.9 -2.7 hypothetical protein compare
IAI47_10690 -0.9 -2.7 hypothetical protein compare
IAI47_02255 -0.9 -6.0 DUF1992 domain-containing protein compare
IAI47_21765 -0.9 -1.2 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_19940 -0.9 -1.5 hypothetical protein compare
IAI47_12655 -0.9 -5.5 Lon protease family protein compare
IAI47_18495 -0.9 -4.6 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_02475 -0.9 -4.7 AaeX family protein compare
IAI47_06235 -0.9 -3.9 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_11655 -0.9 -1.2 hypothetical protein compare
IAI47_03590 -0.9 -4.3 YggT family protein compare
IAI47_16520 -0.9 -4.7 hypothetical protein compare
IAI47_15105 -0.9 -1.7 hypothetical protein compare
IAI47_18490 -0.9 -2.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_16080 -0.8 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_08440 -0.8 -1.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_07165 -0.8 -1.1 exodeoxyribonuclease I compare
IAI47_00445 -0.8 -5.5 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_03195 -0.8 -2.2 cell division protein FtsP compare
IAI47_10555 -0.8 -2.2 hypothetical protein compare
IAI47_08670 -0.8 -1.6 DUF1272 domain-containing protein compare
IAI47_01005 -0.8 -5.2 DUF413 domain-containing protein compare
IAI47_13050 -0.8 -1.6 YbjN domain-containing protein compare
IAI47_12105 -0.8 -3.7 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_18715 -0.8 -1.5 YibL family ribosome-associated protein compare
IAI47_18015 -0.8 -5.8 homoserine O-succinyltransferase compare
IAI47_14325 -0.8 -1.4 ribosome-associated protein YbcJ compare
IAI47_15430 -0.8 -4.7 cytochrome c compare
IAI47_16355 -0.8 -5.1 YtjB family periplasmic protein compare
IAI47_15005 -0.8 -1.4 hypothetical protein compare
IAI47_14190 -0.8 -1.8 DUF2171 domain-containing protein compare
IAI47_06135 -0.8 -1.8 phosphohistidine phosphatase SixA compare
IAI47_21880 -0.8 -0.5 ParA family protein compare
IAI47_13355 -0.8 -5.4 DMT family transporter compare
IAI47_02265 -0.8 -3.4 alternative ribosome-rescue factor A compare
IAI47_21610 -0.8 -5.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_08050 -0.8 -3.8 hypothetical protein compare
IAI47_08065 -0.8 -3.0 acyltransferase compare
IAI47_00430 -0.8 -6.2 DNA polymerase I compare
IAI47_06030 -0.8 -2.7 hypothetical protein compare
IAI47_14295 -0.8 -1.6 hypothetical protein compare
IAI47_01355 -0.8 -2.8 universal stress protein UspA compare
IAI47_19785 -0.8 -2.4 DUF1232 domain-containing protein compare
IAI47_05420 -0.8 -0.7 PTS glucose transporter subunit IIA compare
IAI47_08225 -0.8 -4.0 phosphate starvation-inducible protein PhoH compare
IAI47_09635 -0.8 -2.4 hypothetical protein compare
IAI47_15110 -0.8 -2.1 chromophore lyase compare
IAI47_19225 -0.8 -3.0 PTS sugar transporter subunit IIB compare
IAI47_03725 -0.8 -3.6 phosphoglycerate dehydrogenase compare
IAI47_11360 -0.8 -1.4 hypothetical protein compare
IAI47_06450 -0.8 -2.0 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_06595 -0.8 -2.4 hypothetical protein compare
IAI47_05830 -0.8 -2.2 hypothetical protein compare
IAI47_14555 -0.8 -2.2 hemolysin expression modulator Hha compare
IAI47_15115 -0.8 -4.4 glutamate-5-semialdehyde dehydrogenase compare
IAI47_17645 -0.7 -2.6 hypothetical protein compare
IAI47_11510 -0.7 -2.6 hypothetical protein compare
IAI47_04350 -0.7 -5.8 glutamate--cysteine ligase compare
IAI47_01325 -0.7 -6.0 glutathione-disulfide reductase compare
IAI47_13155 -0.7 -1.0 H-NS histone family protein compare
IAI47_10835 -0.7 -0.5 tRNA-Val compare
IAI47_13475 -0.7 -1.1 molybdopterin synthase catalytic subunit MoaE compare
IAI47_20835 -0.7 -3.5 Dabb family protein compare
IAI47_02695 -0.7 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_06170 -0.7 -1.7 YfcL family protein compare
IAI47_11930 -0.7 -2.9 two-component system response regulator PhoP compare
IAI47_08485 -0.7 -4.1 pyruvate kinase compare
IAI47_20690 -0.7 -2.4 ASCH domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms