Experiment set7IT033 for Herbaspirillum seropedicae SmR1

Compare to:

L-Malic acid carbon source with ammonium chloride; anaerobic; 8 days

Genes with specific phenotypes:

  gene name fitness t score description  
HSERO_RS15790 -3.9 -12.8 chemotaxis protein compare
HSERO_RS11405 -3.5 -11.4 transcriptional regulator compare
HSERO_RS21220 -3.0 -19.1 hypothetical protein compare
HSERO_RS21195 -2.9 -14.3 hypothetical protein compare
HSERO_RS21210 -2.9 -14.4 membrane protein compare
HSERO_RS21225 -2.8 -12.7 hypothetical protein compare
HSERO_RS02615 -2.7 -16.8 polymerase compare
HSERO_RS08185 -2.6 -14.6 sulfate transporter subunit compare
HSERO_RS10155 -2.4 -5.5 antiactivator of flagellar biosynthesis FleN protein compare
HSERO_RS04295 -2.3 -10.1 diguanylate cyclase compare
HSERO_RS07130 -2.3 -5.5 hypothetical protein compare
HSERO_RS01920 -1.8 -5.2 50S ribosomal protein L11 methyltransferase compare
HSERO_RS10615 -1.5 -6.7 transcription elongation factor GreB compare
HSERO_RS16560 -1.5 -10.4 2-hydroxyacid dehydrogenase compare
HSERO_RS21395 -1.4 -6.3 histone acetyltransferase compare
HSERO_RS20340 -1.3 -6.0 DNA methylase N-4 compare
HSERO_RS01300 -1.3 -7.9 phosphate acetyltransferase compare
HSERO_RS10545 -1.3 -7.6 protein disaggregation chaperone compare
HSERO_RS10655 -1.2 -7.2 ribonuclease PH compare
HSERO_RS18605 -1.2 -6.4 histidine kinase compare
HSERO_RS23180 -1.1 -5.5 membrane protein compare
HSERO_RS09430 -1.1 -7.3 peptidase S49 compare
HSERO_RS08175 -1.0 -5.6 D-alanyl-D-alanine carboxypeptidase compare
HSERO_RS11225 +1.0 5.6 branched-chain amino acid ABC transporter permease compare
HSERO_RS11235 +1.1 5.6 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS01525 +1.1 5.7 hypothetical protein compare
HSERO_RS01520 +1.1 9.8 hemagglutinin compare
HSERO_RS01515 +1.2 9.4 hemin-binding protein compare
HSERO_RS20865 +1.3 6.8 ABC transporter permease compare
HSERO_RS01535 +1.4 10.5 phosphohydrolase with GAF sensor compare
HSERO_RS01490 +1.4 11.4 guanylate cyclase compare
HSERO_RS04950 +1.5 8.3 deacetylase compare
HSERO_RS14680 +1.5 9.1 histidine kinase compare
HSERO_RS21125 +1.5 8.2 malate:quinone oxidoreductase compare
HSERO_RS04290 +2.0 5.9 DNA-binding protein compare
HSERO_RS12860 +2.2 15.4 histidine kinase compare
HSERO_RS12850 +2.2 11.2 LuxR family transcriptional regulator compare
HSERO_RS13620 +2.3 14.0 diguanylate cyclase compare
HSERO_RS23505 +2.4 15.3 transcriptional regulator compare
HSERO_RS20810 +2.7 16.9 amidophosphoribosyltransferase compare
HSERO_RS12395 +3.6 8.9 TetR family transcriptional regulator compare
HSERO_RS13935 +4.2 10.5 DNAase compare
HSERO_RS13930 +4.3 34.2 competence protein ComEC compare


Specific phenotypes for nitrogen fixation control L-Malic acid across organisms