Experiment set7IT033 for Herbaspirillum seropedicae SmR1

Compare to:

L-Malic acid carbon source with ammonium chloride; anaerobic; 8 days

200 most important genes:

  gene name fitness t score description  
HSERO_RS13295 -7.2 -5.0 membrane protein compare
HSERO_RS18425 -6.9 -4.8 prephenate dehydrogenase compare
HSERO_RS20330 -6.5 -8.6 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS08650 -6.4 -14.8 acetolactate synthase compare
HSERO_RS16505 -6.0 -7.5 3-isopropylmalate dehydratase small subunit compare
HSERO_RS10215 -5.8 -11.8 flagellar P-ring protein FlgI compare
HSERO_RS18990 -5.8 -7.9 pyrroline-5-carboxylate reductase compare
HSERO_RS19445 -5.7 -11.1 anthranilate phosphoribosyltransferase compare
HSERO_RS16040 -5.7 -4.8 cytochrome CBB3 compare
HSERO_RS16515 -5.7 -15.9 isopropylmalate isomerase compare
HSERO_RS20310 -5.7 -4.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS13240 -5.7 -5.5 cobalamin biosynthesis protein CobD compare
HSERO_RS01815 -5.6 -7.7 gamma-glutamyl kinase compare
HSERO_RS20345 -5.6 -9.2 histidinol dehydrogenase compare
HSERO_RS10205 -5.6 -14.2 flagellar basal body rod protein FlgG compare
HSERO_RS10200 -5.6 -15.1 flagellar basal body rod protein FlgF compare
HSERO_RS07160 -5.5 -8.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS10250 -5.5 -9.1 flagellar biosynthesis protein FliR compare
HSERO_RS10305 -5.5 -17.4 flagellar motor switch protein FliG compare
HSERO_RS13280 -5.5 -3.7 precorrin-4 C11-methyltransferase compare
HSERO_RS13890 -5.4 -8.8 LuxR family transcriptional regulator compare
HSERO_RS10150 -5.4 -11.1 flagellar biosynthesis regulator FlhF compare
HSERO_RS10180 -5.3 -2.8 flagellar biosynthesis protein FlgB compare
HSERO_RS01935 -5.3 -9.4 3-dehydroquinate dehydratase compare
HSERO_RS10125 -5.3 -7.1 chemotaxis protein compare
HSERO_RS10195 -5.2 -17.9 flagellar hook protein FlgE compare
HSERO_RS13255 -5.2 -5.8 cobyrinic acid a,c-diamide synthase compare
HSERO_RS10290 -5.2 -13.0 flagellar biosynthesis protein FliJ compare
HSERO_RS14970 -5.2 -14.8 flagellar motor protein MotB compare
HSERO_RS09050 -5.2 -6.1 2-aminoadipate aminotransferase compare
HSERO_RS13270 -5.2 -7.0 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS19450 -5.1 -7.0 indole-3-glycerol-phosphate synthase compare
HSERO_RS10175 -5.1 -19.7 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS14975 -5.1 -12.3 flagellar motor protein MotA compare
HSERO_RS14985 -5.1 -14.8 transcriptional regulator compare
HSERO_RS10275 -5.1 -15.5 flagellar motor switch protein FliM compare
HSERO_RS13885 -5.1 -13.4 histidine kinase compare
HSERO_RS15560 -5.1 -5.4 phosphoadenosine phosphosulfate reductase compare
HSERO_RS09770 -5.0 -5.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS17110 -5.0 -3.4 ribonuclease H compare
HSERO_RS10285 -5.0 -16.7 flagellar hook-length control protein compare
HSERO_RS10310 -5.0 -12.3 flagellar M-ring protein FliF compare
HSERO_RS10315 -4.9 -7.6 flagellar hook-basal body protein FliE compare
HSERO_RS10295 -4.9 -15.1 ATP synthase compare
HSERO_RS13265 -4.8 -4.7 G3E family GTPase compare
HSERO_RS02650 -4.8 -11.8 dihydroxy-acid dehydratase compare
HSERO_RS10260 -4.8 -10.6 flagellar biosynthesis protein FliP compare
HSERO_RS16500 -4.8 -9.8 3-isopropylmalate dehydrogenase compare
HSERO_RS13310 -4.8 -9.7 cobaltochelatase compare
HSERO_RS19435 -4.8 -10.4 anthranilate synthase subunit I compare
HSERO_RS10355 -4.8 -12.4 flagellin compare
HSERO_RS10185 -4.8 -18.6 flagellar basal body rod protein FlgC compare
HSERO_RS13260 -4.7 -6.0 cobinamide adenolsyltransferase compare
HSERO_RS20315 -4.7 -6.6 imidazole glycerol phosphate synthase compare
HSERO_RS10145 -4.6 -16.8 flagellar biosynthesis protein FlhA compare
HSERO_RS08660 -4.6 -9.3 ketol-acid reductoisomerase compare
HSERO_RS10225 -4.6 -17.9 flagellar hook protein FlgK compare
HSERO_RS00795 -4.6 -3.9 glycerol-3-phosphate dehydrogenase compare
HSERO_RS10230 -4.6 -10.9 flagellar hook-filament junction protein compare
HSERO_RS20350 -4.6 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS08655 -4.6 -2.9 acetolactate synthase compare
HSERO_RS10255 -4.6 -7.4 flagellar biosynthesis protein FliQ compare
HSERO_RS17185 -4.6 -10.3 2-isopropylmalate synthase compare
HSERO_RS16480 -4.6 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS16035 -4.5 -3.1 cytochrome C oxidase compare
HSERO_RS05860 -4.5 -9.7 biopolymer transporter ExbD compare
HSERO_RS13305 -4.5 -4.9 magnesium chelatase compare
HSERO_RS10140 -4.5 -7.4 flagellar biosynthesis protein FlhB compare
HSERO_RS02330 -4.5 -9.4 aspartate carbamoyltransferase compare
HSERO_RS19595 -4.5 -18.8 glutamate synthase compare
HSERO_RS20320 -4.5 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS02340 -4.5 -24.7 dihydroorotase compare
HSERO_RS16475 -4.5 -2.3 tryptophan synthase subunit alpha compare
HSERO_RS10190 -4.5 -4.6 flagellar basal body rod modification protein FlgD compare
HSERO_RS21425 -4.4 -9.3 5,10-methylenetetrahydrofolate reductase compare
HSERO_RS15570 -4.4 -8.9 sulfate adenylyltransferase compare
HSERO_RS13315 -4.4 -1.6 ferredoxin compare
HSERO_RS20920 -4.4 -7.6 3-dehydroquinate synthase compare
HSERO_RS07755 -4.4 -8.8 glutamate racemase compare
HSERO_RS10280 -4.3 -3.1 flagellar basal body protein FliL compare
HSERO_RS10115 -4.2 -7.1 chemotaxis protein CheR compare
HSERO_RS05855 -4.2 -10.5 flagellar motor protein MotA compare
HSERO_RS16055 -4.1 -8.7 cytochrome oxidase subunit I compare
HSERO_RS16065 -4.1 -5.7 cation transporter compare
HSERO_RS10265 -4.1 -4.5 flagellar biosynthesis protein FliO compare
HSERO_RS10160 -4.0 -9.7 flagellar biosynthesis sigma factor compare
HSERO_RS21740 -4.0 -15.0 methionine synthase compare
HSERO_RS19510 -4.0 -12.9 threonine dehydratase compare
HSERO_RS14950 -4.0 -3.3 purine-binding chemotaxis protein compare
HSERO_RS14955 -4.0 -8.8 chemotaxis protein compare
HSERO_RS10340 -4.0 -6.1 flagellar biosynthesis protein FliS compare
HSERO_RS15790 -3.9 -12.8 chemotaxis protein compare
HSERO_RS17900 -3.9 -3.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS16490 -3.9 -17.7 FimV compare
HSERO_RS18430 -3.9 -5.0 chorismate mutase compare
HSERO_RS00455 -3.9 -8.6 homoserine O-acetyltransferase compare
HSERO_RS20325 -3.9 -5.8 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS10165 -3.8 -5.6 flagellar biosynthesis protein compare
HSERO_RS16075 -3.8 -3.6 coproporphyrinogen III oxidase compare
HSERO_RS16440 -3.7 -4.7 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS15575 -3.7 -1.9 uroporphyrin-III C-methyltransferase compare
HSERO_RS13230 -3.7 -2.3 cobyric acid synthase compare
HSERO_RS21100 -3.6 -11.1 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS20240 -3.6 -2.2 cytochrome B compare
HSERO_RS09775 -3.6 -2.5 cobalamin synthase compare
HSERO_RS11405 -3.5 -11.4 transcriptional regulator compare
HSERO_RS16015 -3.5 -5.5 fatty acid desaturase compare
HSERO_RS04325 -3.5 -4.1 helicase I compare
HSERO_RS21640 -3.5 -5.1 recombinase RdgC compare
HSERO_RS07390 -3.4 -11.8 tartrate dehydrogenase compare
HSERO_RS16010 -3.4 -9.1 membrane protein compare
HSERO_RS13275 -3.3 -1.5 cobalamin biosynthesis protein CbiG compare
HSERO_RS13285 -3.3 -1.7 precorrin-2 C20-methyltransferase compare
HSERO_RS15535 -3.3 -5.6 chemotaxis protein CheA compare
HSERO_RS01985 -3.3 -6.2 energy transducer TonB compare
HSERO_RS21205 -3.3 -10.3 hypothetical protein compare
HSERO_RS16030 -3.2 -3.6 cytochrome oxidase assembly protein compare
HSERO_RS19550 -3.2 -3.0 hypothetical protein compare
HSERO_RS20235 -3.2 -1.6 cytochrome C compare
HSERO_RS00800 -3.1 -5.4 hypothetical protein compare
HSERO_RS16045 -3.1 -3.0 cytochrome oxidase compare
HSERO_RS10815 -3.1 -8.3 chromosome segregation protein SMC compare
HSERO_RS13235 -3.1 -8.5 threonine-phosphate decarboxylase compare
HSERO_RS15555 -3.0 -6.4 oxidoreductase compare
HSERO_RS19590 -3.0 -1.6 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS21220 -3.0 -19.1 hypothetical protein compare
HSERO_RS08515 -2.9 -3.7 diguanylate cyclase compare
HSERO_RS21195 -2.9 -14.3 hypothetical protein compare
HSERO_RS00765 -2.9 -6.2 cytochrome C compare
HSERO_RS01915 -2.9 -10.6 membrane protein compare
HSERO_RS21210 -2.9 -14.4 membrane protein compare
HSERO_RS16070 -2.9 -2.6 cytochrome biogenesis protein compare
HSERO_RS21200 -2.9 -15.8 glycosyl transferase family 1 compare
HSERO_RS15565 -2.8 -7.0 sulfate adenylyltransferase subunit 2 compare
HSERO_RS15550 -2.8 -5.4 sulfite reductase compare
HSERO_RS15530 -2.8 -3.1 chemotaxis protein CheZ compare
HSERO_RS21225 -2.8 -12.7 hypothetical protein compare
HSERO_RS09220 -2.7 -3.0 hypothetical protein compare
HSERO_RS02615 -2.7 -16.8 polymerase compare
HSERO_RS07600 -2.7 -5.9 threonine-phosphate decarboxylase compare
HSERO_RS09780 -2.7 -3.2 phosphoglycerate mutase compare
HSERO_RS10210 -2.6 -4.1 flagellar L-ring protein FlgH compare
HSERO_RS16470 -2.6 -1.8 tryptophan synthase subunit alpha compare
HSERO_RS08185 -2.6 -14.6 sulfate transporter subunit compare
HSERO_RS16050 -2.6 -1.8 peptidase S41 compare
HSERO_RS02325 -2.5 -7.1 uracil phosphoribosyltransferase compare
HSERO_RS10320 -2.5 -6.1 flagellar brake protein YcgR compare
HSERO_RS10460 -2.4 -2.3 homoserine dehydrogenase compare
HSERO_RS10155 -2.4 -5.5 antiactivator of flagellar biosynthesis FleN protein compare
HSERO_RS14855 -2.4 -12.5 helicase compare
HSERO_RS18995 -2.4 -3.6 hypothetical protein compare
HSERO_RS23945 -2.4 -4.2 cobyric acid synthase CobQ compare
HSERO_RS10850 -2.4 -4.4 ABC transporter compare
HSERO_RS04295 -2.3 -10.1 diguanylate cyclase compare
HSERO_RS07130 -2.3 -5.5 hypothetical protein compare
HSERO_RS20355 -2.3 -4.3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS15070 -2.2 -1.3 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS14960 -2.2 -5.8 Fis family transcriptional regulator compare
HSERO_RS01530 -2.2 -5.9 3',5'-cyclic-nucleotide phosphodiesterase compare
HSERO_RS16660 -2.2 -8.9 NAD-dependent dehydratase compare
HSERO_RS02260 -2.2 -3.3 DNA polymerase I compare
HSERO_RS21590 -2.2 -11.4 ATP-dependent DNA helicase Rep compare
HSERO_RS01965 -2.1 -7.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
HSERO_RS22045 -2.1 -2.8 UDP-glucose 4-epimerase compare
HSERO_RS07400 -2.1 -3.9 LysR family transcriptional regulator compare
HSERO_RS04330 -2.1 -6.9 ATP-dependent exonuclease compare
HSERO_RS15585 -2.1 -8.6 cobalamin biosynthesis protein CbiX compare
HSERO_RS03285 -2.1 -1.5 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS20365 -2.1 -2.9 metal-dependent hydrolase compare
HSERO_RS21340 -2.1 -3.9 septum formation inhibitor protein compare
HSERO_RS21090 -2.0 -3.9 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS01990 -2.0 -7.0 shikimate 5-dehydrogenase compare
HSERO_RS19185 -2.0 -4.1 phosphomethylpyrimidine kinase compare
HSERO_RS21760 -1.9 -6.2 DSBA oxidoreductase compare
HSERO_RS19525 -1.9 -3.3 PTS sugar transporter subunit IIA compare
HSERO_RS04230 -1.9 -3.9 LuxR family transcriptional regulator compare
HSERO_RS05910 -1.9 -1.8 phosphoribosylglycinamide formyltransferase compare
HSERO_RS23185 -1.9 -1.3 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS03265 -1.8 -7.9 transcription regulator protein compare
HSERO_RS07260 -1.8 -4.2 diguanylate cyclase compare
HSERO_RS21450 -1.8 -3.7 lipid A biosynthesis acyltransferase compare
HSERO_RS18600 -1.8 -1.9 transcriptional regulator compare
HSERO_RS01920 -1.8 -5.2 50S ribosomal protein L11 methyltransferase compare
HSERO_RS13675 -1.8 -3.3 histidine kinase compare
HSERO_RS12690 -1.8 -4.2 transcriptional regulator compare
HSERO_RS22025 -1.7 -5.0 aromatic amino acid aminotransferase compare
HSERO_RS13525 -1.7 -5.9 transmembrane transcriptional regulator (anti-sigma factor) compare
HSERO_RS02090 -1.7 -1.8 Holliday junction DNA helicase RuvA compare
HSERO_RS21345 -1.7 -5.3 cell division inhibitor MinD compare
HSERO_RS10805 -1.7 -2.5 succinyldiaminopimelate aminotransferase compare
HSERO_RS09855 -1.7 -2.5 GTP pyrophosphokinase compare
HSERO_RS17980 -1.7 -2.3 GTP-binding protein compare
HSERO_RS15630 -1.7 -0.8 exodeoxyribonuclease III compare
HSERO_RS04945 -1.6 -1.6 murein transglycosylase compare
HSERO_RS10360 -1.6 -9.4 hypothetical protein compare
HSERO_RS14170 -1.6 -1.0 thioredoxin compare
HSERO_RS10455 -1.5 -5.1 aminotransferase compare
HSERO_RS10615 -1.5 -6.7 transcription elongation factor GreB compare
HSERO_RS16560 -1.5 -10.4 2-hydroxyacid dehydrogenase compare
HSERO_RS13300 -1.5 -3.3 cobalt-precorrin-6Y C(5)-methyltransferase compare


Specific Phenotypes

For 43 genes in this experiment

For nitrogen fixation control L-Malic acid in Herbaspirillum seropedicae SmR1

For nitrogen fixation control L-Malic acid across organisms