Experiment set7IT033 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Hexanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_04172 -6.2 -3.4 transcriptional regulator, TetR family compare
H281DRAFT_06322 -6.0 -3.8 LPS-assembly lipoprotein compare
H281DRAFT_03274 -5.2 -1.5 hypothetical protein compare
H281DRAFT_04337 -5.2 -2.9 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_05714 -4.8 -2.2 anthranilate synthase, component II compare
H281DRAFT_04087 -4.7 -1.3 hypothetical protein compare
H281DRAFT_00194 -4.5 -2.4 argininosuccinate lyase compare
H281DRAFT_06462 -4.4 -2.1 hypothetical protein compare
H281DRAFT_06163 -4.4 -1.2 hypothetical protein compare
H281DRAFT_00315 -4.3 -4.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04848 -4.2 -2.4 hypothetical protein compare
H281DRAFT_03890 -4.2 -1.6 Broad specificity phosphatase PhoE compare
H281DRAFT_01894 -4.0 -2.5 transcriptional regulator, MarR family compare
H281DRAFT_06075 -3.9 -5.7 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_04826 -3.9 -2.6 rhamnosyltransferase compare
H281DRAFT_02670 -3.9 -2.1 transcriptional regulator, GntR family compare
H281DRAFT_02065 -3.7 -2.5 rfaE bifunctional protein, domain II compare
H281DRAFT_00860 -3.6 -1.2 phosphoserine phosphatase compare
H281DRAFT_06315 -3.5 -1.2 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_00317 -3.4 -2.6 O-antigen ligase compare
H281DRAFT_00074 -3.4 -2.3 UDP-galactose 4-epimerase compare
H281DRAFT_01436 -3.3 -2.3 NTE family protein compare
H281DRAFT_00199 -3.2 -2.7 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_03728 -3.2 -1.8 Uncharacterized conserved protein, DUF1697 family compare
H281DRAFT_00523 -3.2 -1.2 protease FtsH subunit HflK compare
H281DRAFT_04302 -3.1 -2.0 molybdopterin adenylyltransferase compare
H281DRAFT_06375 -3.1 -2.2 hypothetical protein compare
H281DRAFT_05801 -3.0 -3.6 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_04719 -2.7 -4.5 TolB protein compare
H281DRAFT_03615 -2.6 -5.6 hopanoid biosynthesis associated radical SAM protein HpnH compare
H281DRAFT_06480 -2.6 -2.2 arginine succinyltransferase compare
H281DRAFT_04120 -2.5 -4.8 argininosuccinate synthase compare
H281DRAFT_02651 -2.5 -1.2 transcriptional regulator, MerR family compare
H281DRAFT_06273 -2.5 -1.7 AmpD protein compare
H281DRAFT_05712 -2.5 -4.3 indole-3-glycerol phosphate synthase compare
H281DRAFT_05476 -2.5 -1.6 Short-chain dehydrogenase compare
H281DRAFT_05881 -2.5 -1.7 D-amino-acid dehydrogenase compare
H281DRAFT_00848 -2.4 -1.6 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_04553 -2.4 -3.0 ketol-acid reductoisomerase compare
H281DRAFT_01011 -2.4 -2.0 Uncharacterized membrane protein YkgB compare
H281DRAFT_00115 -2.4 -2.0 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_02004 -2.4 -3.4 phosphoglycerate mutase compare
H281DRAFT_03853 -2.3 -1.7 UTP:GlnB (protein PII) uridylyltransferase compare
H281DRAFT_01986 -2.3 -3.6 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_04851 -2.3 -3.5 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_01821 -2.3 -1.4 Predicted lipid-binding transport protein, Tim44 family compare
H281DRAFT_00531 -2.2 -3.5 hypothetical protein compare
H281DRAFT_06068 -2.2 -2.6 phosphoribosylanthranilate isomerase compare
H281DRAFT_02235 -2.2 -3.4 multi-sensor signal transduction histidine kinase compare
H281DRAFT_06065 -2.2 -5.3 tryptophan synthase, alpha chain compare
H281DRAFT_00316 -2.2 -5.2 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_04082 -2.1 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_04679 -2.1 -2.8 pyrroline-5-carboxylate reductase compare
H281DRAFT_00856 -2.1 -1.7 2-keto-3-deoxygluconate kinase compare
H281DRAFT_01095 -2.1 -2.4 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_03917 -2.1 -1.3 Uncharacterized integral membrane protein compare
H281DRAFT_02036 -2.0 -3.4 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_06008 -2.0 -3.9 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_00909 -2.0 -2.5 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_00819 -2.0 -1.0 competence protein ComEA compare
H281DRAFT_06067 -2.0 -6.9 tryptophan synthase, beta chain compare
H281DRAFT_03610 -2.0 -2.8 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_05903 -2.0 -1.3 osmotically inducible protein OsmC compare
H281DRAFT_00843 -1.9 -1.9 lipoprotein NlpD compare
H281DRAFT_05937 -1.9 -2.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
H281DRAFT_04552 -1.9 -1.9 acetolactate synthase, small subunit compare
H281DRAFT_00855 -1.9 -1.9 SSU ribosomal protein S12P methylthiotransferase compare
H281DRAFT_06436 -1.9 -1.9 putative membrane protein compare
H281DRAFT_02008 -1.9 -5.5 phosphocarrier protein compare
H281DRAFT_04610 -1.9 -9.0 Fe-S oxidoreductase compare
H281DRAFT_04974 -1.9 -3.9 aromatic-amino-acid transaminase compare
H281DRAFT_04297 -1.8 -6.7 adenosylcobinamide-phosphate synthase compare
H281DRAFT_02214 -1.8 -7.5 homoserine O-acetyltransferase compare
H281DRAFT_00465 -1.8 -2.7 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_03371 -1.8 -2.7 outer membrane protein, multidrug efflux system compare
H281DRAFT_02576 -1.8 -1.6 transcriptional regulator, IclR family compare
H281DRAFT_04388 -1.8 -0.7 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_02398 -1.8 -9.4 fatty-acyl-CoA synthase compare
H281DRAFT_01837 -1.8 -1.3 hypothetical protein compare
H281DRAFT_05086 -1.8 -1.4 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_04676 -1.8 -2.0 hypothetical protein compare
H281DRAFT_05087 -1.8 -1.1 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_02683 -1.8 -1.4 xanthine dehydrogenase accessory factor compare
H281DRAFT_04286 -1.7 -6.4 hypothetical protein conserved
H281DRAFT_01798 -1.7 -1.2 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_06276 -1.7 -3.1 hypothetical protein compare
H281DRAFT_01993 -1.7 -5.7 cytochrome c oxidase subunit 1 compare
H281DRAFT_02732 -1.7 -1.2 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_03072 -1.7 -3.4 Signal transduction histidine kinase compare
H281DRAFT_02216 -1.7 -5.1 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG compare
H281DRAFT_04850 -1.7 -1.6 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_05715 -1.7 -6.7 anthranilate synthase, component I compare
H281DRAFT_02559 -1.6 -1.8 hypothetical protein compare
H281DRAFT_03163 -1.6 -1.8 Protein of unknown function (DUF3348) compare
H281DRAFT_04661 -1.6 -1.7 paraquat-inducible protein A compare
H281DRAFT_00896 -1.6 -2.7 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_06048 -1.6 -4.4 starch synthase (maltosyl-transferring) compare
H281DRAFT_04805 -1.6 -1.3 methyltransferase, FkbM family compare
H281DRAFT_04119 -1.6 -2.6 ornithine carbamoyltransferase compare
H281DRAFT_06073 -1.6 -3.6 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_03909 -1.6 -3.3 Acetoin utilization deacetylase AcuC compare
H281DRAFT_01990 -1.6 -3.5 cytochrome c oxidase subunit 3 compare
H281DRAFT_06127 -1.6 -3.8 hypothetical protein compare
H281DRAFT_06060 -1.5 -3.1 amidophosphoribosyltransferase compare
H281DRAFT_00339 -1.5 -1.8 Uncharacterized membrane protein compare
H281DRAFT_00877 -1.5 -1.7 large conductance mechanosensitive channel compare
H281DRAFT_03453 -1.5 -2.0 transcriptional regulator, TetR family compare
H281DRAFT_00559 -1.5 -1.1 hypothetical protein compare
H281DRAFT_04544 -1.5 -1.9 diacylglycerol kinase (ATP) compare
H281DRAFT_05609 -1.5 -1.0 penicillin-binding protein 1A compare
H281DRAFT_03023 -1.5 -1.0 Protein of unknown function (DUF2866) compare
H281DRAFT_00291 -1.5 -1.9 Cytochrome c553 compare
H281DRAFT_00471 -1.5 -3.2 transcriptional regulator, IclR family compare
H281DRAFT_01679 -1.5 -1.3 shikimate dehydrogenase (EC 1.1.1.25) compare
H281DRAFT_01989 -1.5 -2.5 Protein of unknown function (DUF2909) compare
H281DRAFT_04899 -1.5 -1.4 microcin C transport system ATP-binding protein compare
H281DRAFT_00854 -1.5 -2.8 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_05294 -1.5 -1.7 histidine ammonia-lyase compare
H281DRAFT_00114 -1.5 -2.6 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_05621 -1.4 -1.3 glutamate synthase (NADH) small subunit compare
H281DRAFT_01985 -1.4 -4.2 protoheme IX farnesyltransferase compare
H281DRAFT_00540 -1.4 -1.2 tRNA/rRNA methyltransferase compare
H281DRAFT_03207 -1.4 -2.4 MFS transporter, DHA2 family, methylenomycin A resistance protein compare
H281DRAFT_05819 -1.4 -2.2 tRNA nucleotidyltransferase (CCA-adding enzyme) compare
H281DRAFT_00603 -1.4 -1.9 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_01053 -1.4 -1.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_04844 -1.4 -4.1 Glycosyltransferase, GT2 family compare
H281DRAFT_03147 -1.4 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_06445 -1.4 -0.9 Molybdopterin synthase catalytic subunit compare
H281DRAFT_03640 -1.4 -2.4 transcriptional regulator, IclR family compare
H281DRAFT_05502 -1.4 -1.3 transketolase subunit B compare
H281DRAFT_05646 -1.4 -1.5 hypothetical protein compare
H281DRAFT_03749 -1.4 -0.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_00469 -1.4 -2.3 phasin family protein compare
H281DRAFT_04984 -1.4 -1.9 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_03655 -1.4 -6.1 hypothetical protein compare
H281DRAFT_00886 -1.4 -2.6 two component transcriptional regulator, winged helix family compare
H281DRAFT_05060 -1.4 -1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06022 -1.4 -3.2 DNA polymerase I compare
H281DRAFT_03926 -1.3 -4.2 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_02983 -1.3 -1.6 hypothetical protein compare
H281DRAFT_00290 -1.3 -1.2 Cytochrome c553 compare
H281DRAFT_03128 -1.3 -3.5 oligopeptide transport system permease protein compare
H281DRAFT_00120 -1.3 -1.9 sirohydrochlorin cobaltochelatase compare
H281DRAFT_01346 -1.3 -2.4 isovaleryl-CoA dehydrogenase compare
H281DRAFT_05713 -1.3 -3.5 anthranilate phosphoribosyltransferase compare
H281DRAFT_01531 -1.3 -1.5 protein of unknown function (DUF4148) compare
H281DRAFT_05351 -1.3 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03885 -1.3 -1.7 Protein of unknown function (DUF1656) compare
H281DRAFT_01081 -1.3 -2.8 L-glutamine synthetase compare
H281DRAFT_02215 -1.3 -3.9 methionine biosynthesis protein MetW compare
H281DRAFT_05667 -1.3 -4.9 serine protease DegQ compare
H281DRAFT_02600 -1.3 -1.1 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_04937 -1.3 -1.2 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_03623 -1.3 -2.7 Uncharacterized membrane protein YGL010W compare
H281DRAFT_01257 -1.3 -1.3 Catechol 2,3-dioxygenase compare
H281DRAFT_02366 -1.3 -3.9 hypothetical protein compare
H281DRAFT_05017 -1.3 -2.3 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_02399 -1.3 -3.0 hypothetical protein compare
H281DRAFT_00050 -1.3 -0.8 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_06419 -1.3 -1.0 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_04162 -1.3 -1.7 zinc/manganese transport system substrate-binding protein compare
H281DRAFT_01087 -1.2 -3.3 Sugar phosphate permease compare
H281DRAFT_05494 -1.2 -0.8 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_04694 -1.2 -2.3 heat-inducible transcription repressor HrcA compare
H281DRAFT_05012 -1.2 -1.4 hypothetical protein compare
H281DRAFT_02486 -1.2 -1.5 oxalate/formate antiporter compare
H281DRAFT_05641 -1.2 -1.6 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_01514 -1.2 -1.7 ribose 1,5-bisphosphokinase compare
H281DRAFT_01354 -1.2 -1.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05330 -1.2 -1.0 urea transporter compare
H281DRAFT_03925 -1.2 -3.5 chorismate mutase compare
H281DRAFT_04787 -1.2 -1.0 polysaccharide transporter, PST family compare
H281DRAFT_02759 -1.2 -1.9 phospholipid-binding protein, PBP family compare
H281DRAFT_03450 -1.2 -3.3 ABC-2 type transport system permease protein compare
H281DRAFT_03314 -1.2 -0.9 hypothetical protein compare
H281DRAFT_03047 -1.2 -1.3 protein of unknown function (DUF4148) compare
H281DRAFT_04717 -1.2 -1.3 tol-pal system protein YbgF compare
H281DRAFT_03028 -1.2 -2.5 2-aminoethylphosphonate-pyruvate transaminase compare
H281DRAFT_04707 -1.2 -2.2 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_02910 -1.2 -0.9 conserved hypothetical protein compare
H281DRAFT_03005 -1.2 -1.2 hypothetical protein compare
H281DRAFT_02245 -1.2 -4.6 transcriptional regulator, LysR family compare
H281DRAFT_03233 -1.2 -2.2 cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases compare
H281DRAFT_05645 -1.2 -2.8 phospholipid transport system substrate-binding protein compare
H281DRAFT_01483 -1.2 -1.3 hypothetical protein compare
H281DRAFT_03798 -1.1 -1.1 NitT/TauT family transport system permease protein compare
H281DRAFT_04083 -1.1 -3.4 ATP-dependent Clp protease adaptor protein ClpS compare
H281DRAFT_00323 -1.1 -2.3 GAF domain-containing protein compare
H281DRAFT_03027 -1.1 -2.3 phosphonopyruvate decarboxylase compare
H281DRAFT_02441 -1.1 -0.8 putative ABC transport system ATP-binding protein compare
H281DRAFT_06059 -1.1 -3.9 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_00219 -1.1 -2.4 nitrogen regulatory protein P-II family compare
H281DRAFT_01394 -1.1 -1.4 RND family efflux transporter, MFP subunit compare
H281DRAFT_06288 -1.1 -3.0 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
H281DRAFT_04846 -1.1 -1.6 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_02436 -1.1 -2.7 flagellar hook-associated protein 2 compare
H281DRAFT_00851 -1.1 -4.0 polyhydroxyalkanoate synthase compare
H281DRAFT_05956 -1.1 -1.6 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_03902 -1.1 -2.0 RNA polymerase, sigma 70 subunit, RpoD compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Hexanoic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Hexanoic acid across organisms