Experiment set7IT032 for Methanococcus maripaludis S2

Compare to:

control, 1x iron with casamino acids and vitamins, H2 media

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS00395 +1.3 2.8 MGMT family protein compare
MMP_RS08725 +1.2 1.0 Ni/Fe hydrogenase subunit alpha compare
MMP_RS02310 +1.1 2.4 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS07815 +1.1 1.7 DUF2120 domain-containing protein compare
MMP_RS08850 +1.0 7.1 hypothetical protein compare
MMP_RS00450 +1.0 1.9 4Fe-4S binding protein compare
MMP_RS08555 +0.9 2.0 hypothetical protein compare
MMP_RS01950 +0.8 3.5 hypothetical protein compare
MMP_RS04945 +0.8 2.8 hypothetical protein compare
MMP_RS01935 +0.8 3.3 DUF58 domain-containing protein compare
MMP_RS08845 +0.8 3.1 archaellum operon transcriptional activator EarA family protein compare
MMP_RS06860 +0.7 1.9 4Fe-4S binding protein compare
MMP_RS00655 +0.7 2.1 hypothetical protein compare
MMP_RS07885 +0.7 2.4 tripartite tricarboxylate transporter permease compare
MMP_RS01945 +0.7 2.5 DUF4350 domain-containing protein compare
MMP_RS02290 +0.7 2.8 MBL fold metallo-hydrolase compare
MMP_RS04145 +0.7 1.4 hypothetical protein compare
MMP_RS09025 +0.7 0.9 hypothetical protein compare
MMP_RS06870 +0.6 2.0 DedA family protein compare
MMP_RS01540 +0.6 2.2 DUF504 domain-containing protein compare
MMP_RS08670 +0.6 2.5 metallophosphoesterase compare
MMP_RS00155 +0.6 2.6 heavy metal-binding domain-containing protein compare
MMP_RS00185 +0.6 4.4 potassium channel protein compare
MMP_RS05720 +0.6 2.6 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS06300 +0.6 2.4 ABC transporter substrate-binding protein compare
MMP_RS08310 +0.6 1.5 TMEM165/GDT1 family protein compare
MMP_RS08775 +0.6 3.3 methanogenesis marker 9 domain-containing protein compare
MMP_RS06325 +0.6 1.1 hypothetical protein compare
MMP_RS00290 +0.6 3.1 hypothetical protein compare
MMP_RS07880 +0.5 2.9 AAA family ATPase compare
MMP_RS08640 +0.5 3.7 TIM barrel protein compare
MMP_RS00635 +0.5 2.1 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS03965 +0.5 1.5 hypothetical protein compare
MMP_RS08280 +0.5 1.9 proteasome assembly chaperone family protein compare
MMP_RS08285 +0.5 2.7 serine/threonine protein kinase compare
MMP_RS02110 +0.5 1.4 hypothetical protein compare
MMP_RS05970 +0.5 2.4 class II SORL domain-containing protein compare
MMP_RS05695 +0.5 3.3 phospholipase D-like domain-containing protein compare
MMP_RS08250 +0.5 3.3 pyruvate kinase compare
MMP_RS07970 +0.5 0.9 hypothetical protein compare
MMP_RS04205 +0.5 2.4 carboxymuconolactone decarboxylase family protein compare
MMP_RS00980 +0.5 2.7 hypothetical protein compare
MMP_RS08580 +0.5 0.8 flagellin compare
MMP_RS08930 +0.5 0.5 hypothetical protein compare
MMP_RS08455 +0.5 2.3 multiprotein bridging factor aMBF1 compare
MMP_RS03490 +0.5 1.0 DUF2115 domain-containing protein compare
MMP_RS00855 +0.5 2.1 DUF367 family protein compare
MMP_RS08480 +0.5 3.1 molybdate ABC transporter substrate-binding protein compare
MMP_RS07335 +0.5 1.7 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS01130 +0.5 3.1 flavoprotein compare
MMP_RS08390 +0.4 2.1 DUF5400 domain-containing protein compare
MMP_RS07550 +0.4 3.3 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS05715 +0.4 2.5 hypothetical protein compare
MMP_RS02695 +0.4 2.2 formylmethanofuran dehydrogenase subunit A compare
MMP_RS03840 +0.4 2.2 hypothetical protein compare
MMP_RS06990 +0.4 2.5 CatB-related O-acetyltransferase compare
MMP_RS01055 +0.4 1.1 hypothetical protein compare
MMP_RS07890 +0.4 1.3 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS01525 +0.4 1.0 nucleoside-diphosphate kinase compare
MMP_RS05365 +0.4 1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS00085 +0.4 2.7 DNA cytosine methyltransferase compare
MMP_RS08380 +0.4 2.2 phosphatase PAP2 family protein compare
MMP_RS02170 +0.4 2.1 CBS domain-containing protein compare
MMP_RS07915 +0.4 1.9 DUF4870 domain-containing protein compare
MMP_RS06910 +0.4 2.5 RlmF-related methyltransferase compare
MMP_RS01675 +0.4 0.9 hypothetical protein compare
MMP_RS00235 +0.4 2.4 HDIG domain-containing protein compare
MMP_RS08085 +0.4 2.9 hypothetical protein compare
MMP_RS01065 +0.4 2.9 alpha/beta hydrolase compare
MMP_RS00385 +0.4 1.6 P-II family nitrogen regulator compare
MMP_RS07805 +0.4 2.1 ABC transporter permease compare
MMP_RS00940 +0.4 2.4 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS04100 +0.4 1.5 hypothetical protein compare
MMP_RS00660 +0.4 2.5 alkaline phosphatase family protein compare
MMP_RS08585 +0.4 1.0 flagellin compare
MMP_RS01930 +0.4 2.5 hypothetical protein compare
MMP_RS02300 +0.4 2.0 NAD(P)H-dependent oxidoreductase compare
MMP_RS08265 +0.4 1.8 rubrerythrin compare
MMP_RS00825 +0.4 1.7 fumarylacetoacetate hydrolase family protein compare
MMP_RS06310 +0.4 1.1 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS00665 +0.4 1.5 hypothetical protein compare
MMP_RS07985 +0.4 2.6 nitroreductase family protein compare
MMP_RS06155 +0.4 1.4 DUF4186 domain-containing protein compare
MMP_RS00295 +0.4 0.9 gamma carbonic anhydrase family protein compare
MMP_RS03325 +0.4 2.8 hypothetical protein compare
MMP_RS09050 +0.4 0.9 CAP domain-containing protein compare
MMP_RS03785 +0.4 1.2 cupin domain-containing protein compare
MMP_RS06440 +0.4 1.7 CBS domain-containing protein compare
MMP_RS07715 +0.4 2.5 YfcE family phosphodiesterase compare
MMP_RS00540 +0.4 1.9 PLP-dependent aminotransferase family protein compare
MMP_RS09065 +0.3 2.8 hypothetical protein compare
MMP_RS01785 +0.3 1.5 hypothetical protein compare
MMP_RS07185 +0.3 2.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01420 +0.3 0.8 hypothetical protein compare
MMP_RS06965 +0.3 2.1 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS08235 +0.3 1.3 hypothetical protein compare
MMP_RS04520 +0.3 1.2 nucleoside deaminase compare
MMP_RS01125 +0.3 1.5 thioredoxin family protein compare
MMP_RS02985 +0.3 0.8 hypothetical protein compare
MMP_RS00990 +0.3 0.9 hypothetical protein compare
MMP_RS01460 +0.3 1.3 hypothetical protein compare
MMP_RS01115 +0.3 1.7 molybdopterin molybdotransferase MoeA compare
MMP_RS02770 +0.3 1.4 hypothetical protein compare
MMP_RS04055 +0.3 0.7 hypothetical protein compare
MMP_RS07840 +0.3 1.1 ribonuclease III compare
MMP_RS05155 +0.3 1.5 hypothetical protein compare
MMP_RS02475 +0.3 1.1 hypothetical protein compare
MMP_RS02905 +0.3 1.3 2-thiouracil desulfurase family protein compare
MMP_RS07620 +0.3 1.1 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS00390 +0.3 2.0 ammonium transporter compare
MMP_RS05675 +0.3 1.2 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS07775 +0.3 2.1 alanine dehydrogenase compare
MMP_RS08175 +0.3 1.6 7-cyano-7-deazaguanine synthase compare
MMP_RS09060 +0.3 2.1 hypothetical protein compare
MMP_RS08470 +0.3 1.7 ATP-binding cassette domain-containing protein compare
MMP_RS05360 +0.3 1.3 hypothetical protein compare
MMP_RS02970 +0.3 2.0 hypothetical protein compare
MMP_RS06575 +0.3 1.2 fluoride efflux transporter CrcB compare
MMP_RS01940 +0.3 0.7 MoxR family ATPase compare
MMP_RS00630 +0.3 1.9 ECF transporter S component compare
MMP_RS04165 +0.3 1.4 TetR/AcrR family transcriptional regulator compare
MMP_RS01430 +0.3 1.4 mechanosensitive ion channel family protein compare
MMP_RS05975 +0.3 0.6 hypothetical protein compare
MMP_RS06530 +0.3 1.2 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS06655 +0.3 2.1 glycoside hydrolase family 15 protein compare
MMP_RS07835 +0.3 1.1 TldD/PmbA family protein compare
MMP_RS08890 +0.3 1.9 glycosyltransferase family 4 protein compare
MMP_RS06050 +0.3 1.4 ZIP family metal transporter compare
MMP_RS06710 +0.3 1.3 selenium-binding protein compare
MMP_RS08130 +0.3 1.8 IGHMBP2 family helicase compare
MMP_RS02495 +0.3 1.0 hypothetical protein compare
MMP_RS07910 +0.3 1.7 NAD(P)H-hydrate dehydratase compare
MMP_RS01680 +0.3 1.8 phenylacetate--CoA ligase compare
MMP_RS06515 +0.3 0.9 UPF0489 family protein compare
MMP_RS00640 +0.3 1.5 ABC transporter substrate-binding protein compare
MMP_RS08405 +0.3 1.6 MFS transporter compare
MMP_RS04735 +0.3 1.0 tautomerase family protein compare
MMP_RS06065 +0.3 2.2 iron ABC transporter substrate-binding protein compare
MMP_RS04825 +0.3 1.4 protein-glutamate O-methyltransferase CheR compare
MMP_RS05235 +0.3 1.5 exodeoxyribonuclease III compare
MMP_RS02385 +0.3 1.4 ATP-binding protein compare
MMP_RS08325 +0.3 1.7 hypothetical protein compare
MMP_RS02910 +0.3 1.1 ABC transporter substrate-binding protein compare
MMP_RS02705 +0.3 1.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06540 +0.3 0.5 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS08160 +0.3 1.2 EamA family transporter compare
MMP_RS00950 +0.3 1.3 site-2 protease family protein compare
MMP_RS03895 +0.3 1.0 hypothetical protein compare
MMP_RS08625 +0.3 1.5 type II/IV secretion system ATPase subunit compare
MMP_RS00570 +0.3 0.6 protein-L-isoaspartate O-methyltransferase compare
MMP_RS07925 +0.3 0.9 haloacid dehalogenase compare
MMP_RS08700 +0.3 1.4 hypothetical protein compare
MMP_RS01110 +0.3 1.0 FmdE family protein compare
MMP_RS05665 +0.3 1.3 phosphate ABC transporter permease subunit PstC compare
MMP_RS04740 +0.3 0.8 DUF473 domain-containing protein compare
MMP_RS06720 +0.2 1.6 response regulator transcription factor compare
MMP_RS02680 +0.2 1.2 ABC transporter permease compare
MMP_RS07095 +0.2 0.8 PspC domain-containing protein compare
MMP_RS06560 +0.2 1.3 hypothetical protein compare
MMP_RS01910 +0.2 1.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS04020 +0.2 1.1 hypothetical protein compare
MMP_RS08070 +0.2 0.9 DUF2096 domain-containing protein compare
MMP_RS07100 +0.2 1.4 hypothetical protein compare
MMP_RS07855 +0.2 1.1 class I SAM-dependent methyltransferase compare
MMP_RS06225 +0.2 1.1 DNA double-strand break repair nuclease NurA compare
MMP_RS03740 +0.2 0.8 indolepyruvate oxidoreductase subunit beta compare
MMP_RS01470 +0.2 1.0 ATP-binding cassette domain-containing protein compare
MMP_RS03730 +0.2 1.7 ABC transporter substrate-binding protein compare
MMP_RS07590 +0.2 1.6 hypothetical protein compare
MMP_RS01570 +0.2 0.4 hypothetical protein compare
MMP_RS01620 +0.2 0.7 hypothetical protein compare
MMP_RS08275 +0.2 1.3 hypothetical protein compare
MMP_RS03450 +0.2 0.6 glycine synthesis protein GlyXS (from data) compare
MMP_RS05795 +0.2 1.0 redox-regulated ATPase YchF compare
MMP_RS07350 +0.2 0.5 preprotein translocase subunit Sec61beta compare
MMP_RS05905 +0.2 0.9 undecaprenyl-diphosphate phosphatase compare
MMP_RS08755 +0.2 1.7 sodium:solute symporter family protein compare
MMP_RS00800 +0.2 1.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS00795 +0.2 1.2 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02815 +0.2 0.7 hypothetical protein compare
MMP_RS07150 +0.2 0.9 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS01630 +0.2 0.9 N-glycosylase/DNA lyase compare
MMP_RS02265 +0.2 1.0 nitroreductase family protein compare
MMP_RS05895 +0.2 1.7 metallophosphoesterase compare
MMP_RS01060 +0.2 1.5 calcium/sodium antiporter compare
MMP_RS08490 +0.2 1.8 hypothetical protein compare
MMP_RS07125 +0.2 0.9 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS04580 +0.2 1.4 hypothetical protein compare
MMP_RS05490 +0.2 0.8 IMPACT family protein compare
MMP_RS06570 +0.2 0.6 DUF190 domain-containing protein compare
MMP_RS00945 +0.2 0.3 PadR family transcriptional regulator compare
MMP_RS06500 +0.2 1.0 ATP-binding protein compare
MMP_RS03465 +0.2 0.3 adenine phosphoribosyltransferase compare
MMP_RS02810 +0.2 1.3 hypothetical protein compare
MMP_RS04190 +0.2 1.2 hypothetical protein compare
MMP_RS06675 +0.2 1.1 ADP-specific phosphofructokinase compare
MMP_RS08410 +0.2 0.7 DUF169 domain-containing protein compare
MMP_RS09035 +0.2 0.8 hypothetical protein compare
MMP_RS06010 +0.2 1.4 heavy metal translocating P-type ATPase compare
MMP_RS08205 +0.2 1.3 stage II sporulation protein M compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms