Experiment set7IT032 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.4 -4.4 Tol-Pal system protein TolB compare
IAI47_09040 -4.6 -2.8 NAD-dependent epimerase compare
IAI47_17000 -4.5 -9.2 lipoprotein NlpI compare
IAI47_15635 -4.0 -3.9 RNA polymerase-binding protein DksA compare
IAI47_08085 -4.0 -2.7 helix-turn-helix domain-containing protein compare
IAI47_12275 -3.7 -15.2 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_17965 -3.6 -14.7 glucose-6-phosphate isomerase compare
IAI47_18480 -3.6 -15.4 lipid III flippase WzxE compare
IAI47_12280 -3.4 -10.9 glucan biosynthesis protein G compare
IAI47_10845 -3.4 -5.6 major outer membrane lipoprotein compare
IAI47_13415 -3.3 -13.3 L,D-transpeptidase family protein compare
IAI47_17215 -3.3 -1.6 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13700 -3.2 -5.8 Tol-Pal system protein TolQ compare
IAI47_14075 -3.1 -3.6 transcription antiterminator/RNA stability regulator CspE compare
IAI47_00300 -3.1 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_08705 -3.1 -5.9 carboxy terminal-processing peptidase compare
IAI47_13695 -3.1 -1.1 colicin uptake protein TolR compare
IAI47_08700 -3.1 -5.5 RNA chaperone ProQ compare
IAI47_09580 -3.1 -4.1 FNR family transcription factor compare
IAI47_00760 -3.0 -6.1 envelope stress response regulator transcription factor CpxR compare
IAI47_00655 -3.0 -7.0 glycosyltransferase family 4 protein compare
IAI47_18055 -3.0 -7.7 DNA-binding protein HU-alpha compare
IAI47_04705 -2.9 -1.7 hypothetical protein compare
IAI47_00780 -2.8 -3.7 6-phosphofructokinase compare
IAI47_18470 -2.8 -15.2 ECA oligosaccharide polymerase compare
IAI47_16085 -2.7 -2.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_05155 -2.6 -16.6 polyphosphate kinase 1 compare
IAI47_18830 -2.6 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_21655 -2.6 -1.3 LacI family DNA-binding transcriptional regulator compare
IAI47_12470 -2.5 -13.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_13690 -2.5 -0.9 cell envelope integrity protein TolA compare
IAI47_09055 -2.4 -11.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_15485 -2.4 -1.4 molecular chaperone Skp compare
IAI47_08445 -2.4 -1.4 Holliday junction branch migration protein RuvA compare
IAI47_07025 -2.4 -7.8 glycosyltransferase family 4 protein compare
IAI47_05070 -2.3 -0.8 outer membrane protein assembly factor BamB compare
IAI47_07475 -2.3 -1.1 hypothetical protein compare
IAI47_13625 -2.3 -8.5 CDF family zinc transporter ZitB compare
IAI47_00870 -2.3 -1.1 50S ribosomal protein L31 compare
IAI47_04335 -2.3 -3.0 tRNA-Arg compare
IAI47_03645 -2.2 -13.9 O-antigen ligase family protein compare
IAI47_12880 -2.2 -14.6 formate C-acetyltransferase compare
IAI47_12885 -2.2 -7.6 pyruvate formate lyase 1-activating protein compare
IAI47_07030 -2.2 -7.3 HAD family hydrolase compare
IAI47_08440 -2.2 -2.1 crossover junction endodeoxyribonuclease RuvC compare
IAI47_00670 -2.2 -13.7 sugar glycosyltransferase compare
IAI47_12925 -2.1 -4.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_04800 -2.1 -1.3 RnfH family protein compare
IAI47_03640 -2.1 -11.7 glycosyltransferase compare
IAI47_04110 -2.1 -16.4 two-component sensor histidine kinase BarA compare
IAI47_17155 -2.0 -8.0 calcium/sodium antiporter compare
IAI47_11515 -2.0 -1.8 hypothetical protein compare
IAI47_13885 -1.9 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_00940 -1.9 -8.8 HTH-type transcriptional repressor FabR compare
IAI47_11655 -1.9 -2.4 hypothetical protein compare
IAI47_00110 -1.8 -6.5 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_18520 -1.8 -11.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_03550 -1.8 -11.2 membrane-bound lytic murein transglycosylase MltC compare
IAI47_00465 -1.8 -2.7 ribosome-dependent GTPase TypA compare
IAI47_09235 -1.8 -1.6 type I DNA topoisomerase compare
IAI47_00675 -1.7 -11.0 glycosyltransferase family 9 protein compare
IAI47_12865 -1.7 -8.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_21600 -1.7 -2.9 EamA family transporter compare
IAI47_11450 -1.7 -4.0 ankyrin repeat domain-containing protein compare
IAI47_03725 -1.6 -6.8 phosphoglycerate dehydrogenase compare
IAI47_17005 -1.6 -5.3 polyribonucleotide nucleotidyltransferase compare
IAI47_03375 -1.6 -7.9 peptide chain release factor 3 compare
IAI47_13725 -1.6 -5.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_03820 -1.6 -3.1 site-specific tyrosine recombinase XerD compare
IAI47_00770 -1.6 -0.9 general stress protein compare
IAI47_01000 -1.6 -10.7 HTH-type transcriptional regulator HdfR compare
IAI47_07180 -1.6 -6.0 DUF496 family protein compare
IAI47_20595 -1.5 -3.3 GhoT/OrtT family toxin compare
IAI47_21595 -1.5 -8.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_18410 -1.5 -4.4 diaminopimelate epimerase compare
IAI47_11375 -1.4 -1.4 hypothetical protein compare
IAI47_17020 -1.4 -1.9 30S ribosome-binding factor RbfA compare
IAI47_01475 -1.4 -5.7 MurR/RpiR family transcriptional regulator compare
IAI47_05035 -1.4 -2.7 nucleoside-diphosphate kinase compare
IAI47_06245 -1.4 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_08845 -1.3 -1.3 cell division topological specificity factor MinE compare
IAI47_12305 -1.3 -6.1 hypothetical protein compare
IAI47_03680 -1.3 -7.5 transketolase compare
IAI47_16995 -1.3 -1.6 protein YrbN compare
IAI47_10545 -1.3 -2.5 hypothetical protein compare
IAI47_12565 -1.3 -8.5 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_08355 -1.3 -2.4 flagellar protein FlhE compare
IAI47_04300 -1.3 -5.2 recombinase RecA compare
IAI47_18400 -1.3 -2.0 tyrosine recombinase XerC compare
IAI47_05090 -1.3 -2.6 hypothetical protein compare
IAI47_16420 -1.2 -7.8 LacI family DNA-binding transcriptional regulator compare
IAI47_04120 -1.2 -7.9 GTP diphosphokinase compare
IAI47_21765 -1.2 -1.5 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_17165 -1.2 -6.9 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_14945 -1.2 -2.5 pyrroline-5-carboxylate reductase compare
IAI47_16520 -1.2 -6.6 hypothetical protein compare
IAI47_03615 -1.2 -6.1 glutathione synthase compare
IAI47_01940 -1.2 -3.6 DUF2559 family protein compare
IAI47_07000 -1.2 -6.4 UDP-glucose 4-epimerase GalE compare
IAI47_06235 -1.2 -5.1 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_10565 -1.2 -1.5 DUF4113 domain-containing protein compare
IAI47_14295 -1.1 -3.0 hypothetical protein compare
IAI47_21610 -1.1 -7.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_02260 -1.1 -3.8 Zn(2+)-responsive transcriptional regulator compare
IAI47_11540 -1.1 -2.4 type VI secretion system tip protein VgrG compare
IAI47_10520 -1.1 -1.8 pyridoxamine 5'-phosphate oxidase compare
IAI47_00500 -1.1 -6.6 ATP-dependent DNA helicase RecG compare
IAI47_06450 -1.1 -3.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_07015 -1.1 -4.1 ABC transporter ATP-binding protein compare
IAI47_17235 -1.1 -6.4 stringent starvation protein A compare
IAI47_06915 -1.1 -5.9 outer membrane assembly protein AsmA compare
IAI47_07930 -1.1 -0.9 DUF2158 domain-containing protein compare
IAI47_02345 -1.1 -1.1 5S ribosomal RNA compare
IAI47_01545 -1.1 -4.2 cell division ATP-binding protein FtsE compare
IAI47_08815 -1.1 -2.7 hypothetical protein compare
IAI47_16080 -1.1 -5.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_11880 -1.0 -1.5 hypothetical protein compare
IAI47_08450 -1.0 -2.0 Holliday junction branch migration DNA helicase RuvB compare
IAI47_11500 -1.0 -1.8 type VI secretion system tip protein VgrG compare
IAI47_19940 -1.0 -2.1 hypothetical protein compare
IAI47_12260 -1.0 -3.8 hypothetical protein compare
IAI47_09750 -1.0 -4.3 ROK family transcriptional regulator compare
IAI47_20000 -1.0 -2.3 PTS sugar transporter subunit IIB compare
IAI47_19935 -1.0 -3.2 hypothetical protein compare
IAI47_18495 -1.0 -4.9 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_13065 -1.0 -1.5 DUF1418 family protein compare
IAI47_00505 -1.0 -4.4 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_18770 -1.0 -2.2 type I addiction module toxin, SymE family compare
IAI47_11760 -1.0 -0.9 TonB-dependent siderophore receptor compare
IAI47_18490 -1.0 -2.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_07510 -1.0 -3.5 hypothetical protein compare
IAI47_10840 -1.0 -2.1 pyruvate kinase PykF compare
IAI47_19825 -1.0 -4.2 EAL domain-containing protein compare
IAI47_00460 -1.0 -1.6 glutamate--ammonia ligase compare
IAI47_14555 -1.0 -2.8 hemolysin expression modulator Hha compare
IAI47_08680 -1.0 -4.7 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_07005 -1.0 -2.1 glycosyltransferase family 4 protein compare
IAI47_07490 -1.0 -1.7 DNA-binding protein compare
IAI47_02090 -1.0 -2.6 elongation factor Tu compare
IAI47_13050 -1.0 -2.4 YbjN domain-containing protein compare
IAI47_16195 -0.9 -5.5 transaldolase compare
IAI47_18415 -0.9 -2.9 lipoprotein compare
IAI47_21235 -0.9 -1.8 hypothetical protein compare
IAI47_09305 -0.9 -2.2 cyclic di-GMP phosphodiesterase compare
IAI47_17035 -0.9 -1.7 ribosome maturation factor RimP compare
IAI47_02255 -0.9 -5.6 DUF1992 domain-containing protein compare
IAI47_06565 -0.9 -1.2 YejL family protein compare
IAI47_20005 -0.9 -1.7 PTS sugar transporter subunit IIA compare
IAI47_18475 -0.9 -5.8 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_00445 -0.9 -5.5 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_13720 -0.9 -3.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_04775 -0.9 -1.8 SIR2 family protein compare
IAI47_11445 -0.9 -2.6 ankyrin repeat domain-containing protein compare
IAI47_00375 -0.9 -6.0 ribose operon transcriptional repressor RbsR compare
IAI47_11995 -0.9 -3.5 beta-N-acetylhexosaminidase compare
IAI47_03865 -0.9 -1.3 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_09680 -0.9 -3.6 hypothetical protein compare
IAI47_07360 -0.9 -1.5 hypothetical protein compare
IAI47_06135 -0.9 -2.3 phosphohistidine phosphatase SixA compare
IAI47_16350 -0.9 -4.1 phosphoserine phosphatase compare
IAI47_06595 -0.9 -1.9 hypothetical protein compare
IAI47_04690 -0.9 -4.1 hypothetical protein compare
IAI47_12655 -0.9 -5.3 Lon protease family protein compare
IAI47_17560 -0.9 -0.8 ROK family transcriptional regulator compare
IAI47_00430 -0.9 -6.5 DNA polymerase I compare
IAI47_01355 -0.9 -4.2 universal stress protein UspA compare
IAI47_18775 -0.9 -4.4 hypothetical protein compare
IAI47_05660 -0.8 -3.8 serine protease compare
IAI47_15115 -0.8 -4.9 glutamate-5-semialdehyde dehydrogenase compare
IAI47_04865 -0.8 -0.9 SoxR-reducing system protein RseC compare
IAI47_08635 -0.8 -2.7 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_14205 -0.8 -3.7 hypothetical protein compare
IAI47_11420 -0.8 -1.1 hypothetical protein compare
IAI47_10160 -0.8 -2.7 AAA family ATPase compare
IAI47_03610 -0.8 -2.4 YqgE/AlgH family protein compare
IAI47_00875 -0.8 -1.1 met regulon transcriptional regulator MetJ compare
IAI47_18015 -0.8 -5.6 homoserine O-succinyltransferase compare
IAI47_21450 -0.8 -0.9 general stress protein compare
IAI47_11360 -0.8 -1.2 hypothetical protein compare
IAI47_04805 -0.8 -2.3 outer membrane protein assembly factor BamE compare
IAI47_15540 -0.8 -4.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_10835 -0.8 -0.5 tRNA-Val compare
IAI47_01650 -0.8 -4.4 gluconate operon transcriptional repressor GntR compare
IAI47_12930 -0.8 -1.5 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_01005 -0.8 -4.4 DUF413 domain-containing protein compare
IAI47_00850 -0.8 -4.0 ATP-dependent protease subunit HslV compare
IAI47_01345 -0.8 -5.4 oligopeptidase A compare
IAI47_14590 -0.8 -6.0 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_21080 -0.7 -2.2 transposase compare
IAI47_03590 -0.7 -3.6 YggT family protein compare
IAI47_17385 -0.7 -2.4 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_18250 -0.7 -2.3 transcription/translation regulatory transformer protein RfaH compare
IAI47_09435 -0.7 -3.6 GtrA family protein compare
IAI47_18705 -0.7 -4.0 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_12265 -0.7 -2.6 secY/secA suppressor protein compare
IAI47_10930 -0.7 -3.0 C40 family peptidase compare
IAI47_14200 -0.7 -1.7 hypothetical protein compare
IAI47_08625 -0.7 -2.2 hypothetical protein compare
IAI47_04350 -0.7 -5.6 glutamate--cysteine ligase compare
IAI47_16810 -0.7 -4.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms