Experiment set7IT031 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium bromide 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4353 -7.1 -7.0 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2129 -5.9 -5.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5014 -5.4 -2.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4352 -3.6 -5.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3941 -2.8 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3461 -2.4 -2.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4416 -2.1 -4.1 Tyrosine recombinase XerC compare
Pf6N2E2_4162 -1.9 -4.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3349 -1.9 -3.9 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4369 -1.9 -3.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3198 -1.8 -2.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2984 -1.7 -4.0 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3351 -1.7 -5.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_447 -1.6 -5.1 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_5527 -1.6 -2.5 Cold shock protein CspC compare
Pf6N2E2_3134 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_5633 -1.5 -11.3 Aromatic amino acid transport protein AroP compare
Pf6N2E2_5258 -1.5 -6.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_4908 -1.5 -6.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2325 -1.4 -5.1 Recombination protein RecR compare
Pf6N2E2_4372 -1.4 -5.1 FIG00460773: hypothetical protein compare
Pf6N2E2_5536 -1.4 -2.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_1774 -1.4 -2.3 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2264 -1.4 -2.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4077 -1.4 -2.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_241 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_5723 -1.4 -7.9 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2127 -1.4 -4.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5764 -1.3 -7.8 C4-dicarboxylate transporter/malic acid transport protein compare
Pf6N2E2_2313 -1.3 -3.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3199 -1.3 -6.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5257 -1.3 -7.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2640 -1.2 -2.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3942 -1.2 -7.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5640 -1.2 -2.4 FIG00955597: hypothetical protein compare
Pf6N2E2_1673 -1.1 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_3786 -1.1 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_178 -1.1 -1.4 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4071 -1.1 -2.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3303 -1.1 -3.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_84 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_4072 -1.0 -3.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3460 -1.0 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4886 -1.0 -7.6 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3074 -1.0 -1.2 FIG00960973: hypothetical protein compare
Pf6N2E2_4159 -1.0 -3.1 Cytochrome c4 compare
Pf6N2E2_3505 -0.9 -1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2788 -0.9 -1.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_3665 -0.9 -0.9 serine/threonine protein kinase compare
Pf6N2E2_5316 -0.9 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2572 -0.9 -2.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_37 -0.9 -1.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_4360 -0.9 -5.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_5428 -0.9 -4.0 DNA recombination and repair protein RecO compare
Pf6N2E2_2025 -0.9 -5.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_1694 -0.9 -1.2 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5704 -0.9 -4.1 Transcriptional regulatory protein PhoP compare
Pf6N2E2_1606 -0.9 -3.9 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2318 -0.9 -5.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2320 -0.9 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2013 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_2317 -0.8 -2.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3770 -0.8 -1.9 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1656 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_6045 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_5338 -0.8 -4.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2940 -0.8 -2.9 OmpA family protein compare
Pf6N2E2_2128 -0.8 -2.7 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_1545 -0.8 -2.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4197 -0.8 -4.4 DNA recombination and repair protein RecF compare
Pf6N2E2_3221 -0.8 -1.8 FIG00352444: hypothetical protein compare
Pf6N2E2_2284 -0.8 -1.6 Cell division inhibitor-related protein compare
Pf6N2E2_1339 -0.8 -1.5 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5632 -0.8 -2.2 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2311 -0.8 -4.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5430 -0.8 -4.6 Transglycosylase, Slt family compare
Pf6N2E2_3204 -0.8 -1.9 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_4599 -0.8 -2.0 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_4743 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_4453 -0.7 -6.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1534 -0.7 -1.5 Probable transmembrane protein compare
Pf6N2E2_40 -0.7 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2126 -0.7 -3.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3617 -0.7 -2.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1665 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_2217 -0.7 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5320 -0.7 -4.0 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4684 -0.7 -2.6 hypothetical protein compare
Pf6N2E2_5319 -0.7 -3.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4467 -0.7 -2.6 hypothetical protein compare
Pf6N2E2_3122 -0.7 -1.6 Chemotaxis signal transduction protein compare
Pf6N2E2_3475 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_3607 -0.7 -3.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5317 -0.7 -5.6 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_2309 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_1199 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_3876 -0.7 -2.6 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2849 -0.7 -2.1 Chromosome initiation inhibitor compare
Pf6N2E2_687 -0.7 -1.2 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_4068 -0.7 -5.0 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_5068 -0.7 -5.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_420 -0.7 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3557 -0.7 -1.6 Chaperone-modulator protein CbpM compare
Pf6N2E2_1824 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_2477 -0.7 -1.5 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_1502 -0.7 -1.7 Two-component system regulatory protein compare
Pf6N2E2_4918 -0.7 -2.0 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2552 -0.7 -3.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5869 -0.7 -1.8 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_1091 -0.6 -1.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_649 -0.6 -1.3 General secretion pathway protein L compare
Pf6N2E2_5679 -0.6 -2.8 hypothetical protein compare
Pf6N2E2_3969 -0.6 -1.5 Membrane-fusion protein compare
Pf6N2E2_1043 -0.6 -2.4 Transcriptional regulator, IclR family compare
Pf6N2E2_4943 -0.6 -1.3 PspA/IM30 family protein compare
Pf6N2E2_1932 -0.6 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2012 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_1014 -0.6 -1.6 Nitrate/nitrite transporter compare
Pf6N2E2_405 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_3504 -0.6 -4.3 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2310 -0.6 -4.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1715 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_942 -0.6 -1.1 Mll6465 protein compare
Pf6N2E2_1917 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_5318 -0.6 -5.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3696 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_3785 -0.6 -3.1 Twin-arginine translocation protein TatB compare
Pf6N2E2_2138 -0.6 -1.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1404 -0.6 -1.9 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_2790 -0.6 -1.8 Helix-turn-helix motif compare
Pf6N2E2_4388 -0.6 -4.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_2702 -0.6 -3.0 FIG00962464: hypothetical protein compare
Pf6N2E2_619 -0.6 -2.4 Exonuclease SbcD compare
Pf6N2E2_42 -0.6 -2.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4399 -0.6 -2.6 GGDEF domain/EAL domain protein compare
Pf6N2E2_3563 -0.6 -1.4 FMN-dependent NADH-azoreductase compare
Pf6N2E2_4417 -0.6 -1.5 Protein of unknown function DUF484 compare
Pf6N2E2_5714 -0.6 -1.1 Flavoprotein WrbA compare
Pf6N2E2_2175 -0.6 -1.7 Transcriptional regulator, RpiR family compare
Pf6N2E2_622 -0.6 -2.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5545 -0.6 -1.4 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2069 -0.6 -1.8 FIG00953703: hypothetical protein compare
Pf6N2E2_5321 -0.6 -3.6 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_888 -0.6 -1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_629 -0.6 -2.1 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_1839 -0.6 -2.0 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2736 -0.6 -2.6 hypothetical protein compare
Pf6N2E2_1697 -0.6 -2.3 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_663 -0.6 -1.4 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_3039 -0.6 -3.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2527 -0.6 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3326 -0.5 -1.1 hypothetical protein compare
Pf6N2E2_1504 -0.5 -1.4 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_444 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_698 -0.5 -1.2 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_2899 -0.5 -2.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_1340 -0.5 -1.4 major pilin protein fimA compare
Pf6N2E2_5001 -0.5 -0.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2208 -0.5 -1.8 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_1081 -0.5 -1.1 probable membrane protein YPO3302 compare
Pf6N2E2_5188 -0.5 -2.0 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_34 -0.5 -2.3 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_1128 -0.5 -1.3 Two-component response regulator compare
Pf6N2E2_3806 -0.5 -1.4 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_3897 -0.5 -2.4 hypothetical protein compare
Pf6N2E2_142 -0.5 -2.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5133 -0.5 -1.4 FIG00953980: hypothetical protein compare
Pf6N2E2_3096 -0.5 -0.8 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_553 -0.5 -2.2 Uncharacterized protein ImpD compare
Pf6N2E2_2749 -0.5 -2.7 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
Pf6N2E2_361 -0.5 -1.3 Peptide ABC transporter, permease protein compare
Pf6N2E2_3470 -0.5 -2.8 hypothetical protein compare
Pf6N2E2_5668 -0.5 -2.0 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_2339 -0.5 -3.8 Guanine deaminase (EC 3.5.4.3) compare
Pf6N2E2_1298 -0.5 -2.3 Xanthine transporter,putative compare
Pf6N2E2_5015 -0.5 -2.4 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_384 -0.5 -0.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2178 -0.5 -2.8 FIG00960144: hypothetical protein compare
Pf6N2E2_3003 -0.5 -1.3 Bacteriophage protein GP46 compare
Pf6N2E2_613 -0.5 -0.8 lipoprotein, putative compare
Pf6N2E2_4710 -0.5 -0.6 hypothetical protein compare
Pf6N2E2_1477 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_155 -0.5 -1.7 Probable transmembrane protein compare
Pf6N2E2_1440 -0.5 -1.6 Putative tRNA-m1A22 methylase compare
Pf6N2E2_421 -0.5 -2.3 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5793 -0.5 -2.5 Aspartyl aminopeptidase compare
Pf6N2E2_579 -0.5 -0.7 FIG00962753: hypothetical protein compare
Pf6N2E2_5207 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_4928 -0.5 -1.0 Permeases of the major facilitator superfamily compare
Pf6N2E2_339 -0.5 -1.5 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2941 -0.5 -2.5 Esterase A compare
Pf6N2E2_5293 -0.5 -2.6 Protein sirB1 compare
Pf6N2E2_5816 -0.5 -0.8 Smr domain protein compare
Pf6N2E2_2351 -0.5 -2.3 Oxygen-regulated invasion protein OrgA compare
Pf6N2E2_2111 -0.5 -1.3 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_2367 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_4562 -0.5 -1.7 L-cystine uptake protein TcyP compare
Pf6N2E2_946 -0.5 -1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_4888 -0.5 -4.2 Excinuclease ABC subunit A compare
Pf6N2E2_2308 -0.5 -2.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare


Specific Phenotypes

For 3 genes in this experiment

For stress sodium bromide in Pseudomonas fluorescens FW300-N2E2

For stress sodium bromide across organisms