Experiment set7IT030 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium bromide 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4353 -5.6 -7.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5014 -5.3 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2129 -5.3 -6.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4352 -4.1 -3.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4162 -3.6 -4.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3505 -3.4 -2.1 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4416 -2.8 -4.2 Tyrosine recombinase XerC compare
Pf6N2E2_4369 -2.7 -3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3351 -2.0 -5.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3199 -1.8 -6.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5536 -1.7 -2.5 Holliday junction DNA helicase RuvA compare
Pf6N2E2_447 -1.7 -4.7 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2984 -1.6 -2.0 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2827 -1.6 -2.0 hypothetical protein compare
Pf6N2E2_5723 -1.5 -8.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4417 -1.5 -2.1 Protein of unknown function DUF484 compare
Pf6N2E2_2127 -1.5 -5.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5633 -1.5 -11.0 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2325 -1.4 -5.7 Recombination protein RecR compare
Pf6N2E2_1691 -1.4 -3.3 hypothetical protein compare
Pf6N2E2_5428 -1.4 -5.5 DNA recombination and repair protein RecO compare
Pf6N2E2_2320 -1.4 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2074 -1.4 -2.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4372 -1.3 -3.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3349 -1.3 -2.3 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5257 -1.3 -6.3 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5764 -1.3 -6.2 C4-dicarboxylate transporter/malic acid transport protein compare
Pf6N2E2_3617 -1.3 -4.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1040 -1.2 -1.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5704 -1.2 -5.1 Transcriptional regulatory protein PhoP compare
Pf6N2E2_4773 -1.2 -1.4 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5430 -1.2 -6.5 Transglycosylase, Slt family compare
Pf6N2E2_4987 -1.2 -1.4 MaoC-like domain protein compare
Pf6N2E2_4205 -1.2 -3.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5527 -1.2 -2.0 Cold shock protein CspC compare
Pf6N2E2_2934 -1.2 -3.5 lipoprotein, putative compare
Pf6N2E2_2264 -1.2 -3.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5258 -1.1 -5.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3303 -1.1 -3.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2912 -1.1 -1.7 FIG00954094: hypothetical protein compare
Pf6N2E2_2128 -1.1 -4.4 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4181 -1.1 -1.3 Organic hydroperoxide resistance protein compare
Pf6N2E2_3461 -1.1 -0.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1834 -1.1 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5226 -1.1 -1.3 FIG00955589: hypothetical protein compare
Pf6N2E2_5312 -1.1 -2.5 FIG00964214: hypothetical protein compare
Pf6N2E2_1211 -1.1 -2.1 Lactoylglutathione lyase compare
Pf6N2E2_4159 -1.1 -2.6 Cytochrome c4 compare
Pf6N2E2_1281 -1.1 -2.6 ATPase involved in DNA repair compare
Pf6N2E2_3942 -1.1 -6.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5406 -1.0 -2.4 FIG00958224: hypothetical protein compare
Pf6N2E2_1545 -1.0 -3.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3460 -1.0 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2025 -1.0 -5.3 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_1966 -1.0 -1.7 SAM-dependent methyltransferases compare
Pf6N2E2_1606 -1.0 -4.4 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_4197 -1.0 -5.8 DNA recombination and repair protein RecF compare
Pf6N2E2_1656 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_4908 -1.0 -4.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2536 -0.9 -1.5 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_4360 -0.9 -6.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_2018 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_98 -0.9 -2.1 putative transmembrane protein compare
Pf6N2E2_178 -0.9 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2313 -0.9 -2.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_659 -0.9 -2.0 Transcriptional regulatory protein ompR compare
Pf6N2E2_919 -0.9 -1.8 FIG00954373: hypothetical protein compare
Pf6N2E2_2126 -0.9 -3.4 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2527 -0.9 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_639 -0.9 -2.9 FIG01285020: hypothetical protein compare
Pf6N2E2_5703 -0.9 -1.9 outer membrane protein H1 compare
Pf6N2E2_4071 -0.9 -2.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1932 -0.8 -3.1 Transcriptional regulator, IclR family compare
Pf6N2E2_37 -0.8 -1.5 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2121 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_754 -0.8 -1.5 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_4453 -0.8 -7.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2311 -0.8 -4.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2940 -0.8 -3.9 OmpA family protein compare
Pf6N2E2_1441 -0.8 -1.4 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_441 -0.8 -2.1 FIG00958773: hypothetical protein compare
Pf6N2E2_1696 -0.8 -2.5 Alkanesulfonates-binding protein compare
Pf6N2E2_1140 -0.8 -2.5 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_2371 -0.8 -2.1 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_3534 -0.8 -1.5 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5668 -0.8 -2.8 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_1885 -0.8 -2.3 Transcriptional regulator, AraC family compare
Pf6N2E2_443 -0.8 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_362 -0.8 -2.6 Dipeptide transport system permease protein dppC compare
Pf6N2E2_1412 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_1758 -0.8 -1.3 Transcriptional regulator, MarR family compare
Pf6N2E2_946 -0.8 -1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_449 -0.8 -1.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_2428 -0.8 -2.1 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_204 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_3875 -0.7 -1.1 FIG00953324: hypothetical protein compare
Pf6N2E2_5759 -0.7 -3.6 DNA recombination protein RmuC compare
Pf6N2E2_2318 -0.7 -3.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1095 -0.7 -1.5 Opine oxidase subunit C compare
Pf6N2E2_3300 -0.7 -1.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5319 -0.7 -4.6 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2309 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_5339 -0.7 -3.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1471 -0.7 -2.8 Dienelactone hydrolase and related enzymes compare
Pf6N2E2_40 -0.7 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_623 -0.7 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_193 -0.7 -2.5 hypothetical protein compare
Pf6N2E2_5816 -0.7 -1.4 Smr domain protein compare
Pf6N2E2_5015 -0.7 -2.8 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_812 -0.7 -2.7 Glycosyltransferase compare
Pf6N2E2_5632 -0.7 -1.5 Aromatic amino acid transport protein AroP compare
Pf6N2E2_922 -0.7 -1.8 FIG00794167: hypothetical protein compare
Pf6N2E2_3095 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_1776 -0.7 -1.6 Chemotaxis protein CheD compare
Pf6N2E2_2310 -0.7 -4.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_715 -0.7 -2.6 putative membrane protein compare
Pf6N2E2_5318 -0.7 -5.9 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2674 -0.7 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_2552 -0.7 -3.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2201 -0.7 -2.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_2693 -0.7 -0.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3504 -0.7 -4.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_4886 -0.7 -4.6 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4273 -0.7 -3.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3282 -0.7 -1.2 FIG005080: Possible exported protein compare
Pf6N2E2_923 -0.7 -1.1 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_367 -0.7 -1.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5069 -0.7 -2.6 putative Cytochrome bd2, subunit II compare
Pf6N2E2_1876 -0.7 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_238 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_3588 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_4640 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_2440 -0.6 -1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_968 -0.6 -1.6 FIG00962395: hypothetical protein compare
Pf6N2E2_1136 -0.6 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1635 -0.6 -2.8 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_4706 -0.6 -1.7 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3612 -0.6 -1.4 HflK protein compare
Pf6N2E2_2424 -0.6 -2.2 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_4658 -0.6 -2.6 FIG00955006: hypothetical protein compare
Pf6N2E2_3198 -0.6 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4072 -0.6 -2.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1463 -0.6 -1.4 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_2534 -0.6 -2.3 Cell division protein BolA compare
Pf6N2E2_1805 -0.6 -2.4 Multidrug resistance protein B compare
Pf6N2E2_1699 -0.6 -1.3 FIG00955832: hypothetical protein compare
Pf6N2E2_5714 -0.6 -1.4 Flavoprotein WrbA compare
Pf6N2E2_5679 -0.6 -2.8 hypothetical protein compare
Pf6N2E2_5338 -0.6 -3.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4057 -0.6 -0.7 lipoprotein, putative compare
Pf6N2E2_5321 -0.6 -3.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_4540 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_2414 -0.6 -2.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf6N2E2_3725 -0.6 -1.1 FIG085779: Lipoprotein compare
Pf6N2E2_6082 -0.6 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5317 -0.6 -4.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_4562 -0.6 -1.6 L-cystine uptake protein TcyP compare
Pf6N2E2_3872 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_3702 -0.6 -1.5 FIG00953907: hypothetical protein compare
Pf6N2E2_1182 -0.6 -1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_2106 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_3569 -0.6 -0.7 hypothetical protein compare
Pf6N2E2_3641 -0.6 -1.8 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_4388 -0.6 -4.0 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_698 -0.6 -0.9 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_2992 -0.6 -2.1 Regulatory protein RecX compare
Pf6N2E2_5599 -0.5 -1.5 Electron transport complex protein RnfA compare
Pf6N2E2_1905 -0.5 -2.3 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_304 -0.5 -1.9 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_3062 -0.5 -2.0 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3122 -0.5 -1.4 Chemotaxis signal transduction protein compare
Pf6N2E2_1670 -0.5 -2.0 conserved membrane protein compare
Pf6N2E2_43 -0.5 -2.2 Histidine permease YuiF compare
Pf6N2E2_3039 -0.5 -3.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2081 -0.5 -1.5 putative exported protein compare
Pf6N2E2_1462 -0.5 -2.3 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_3531 -0.5 -2.4 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_2840 -0.5 -2.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_6045 -0.5 -0.8 hypothetical protein compare
Pf6N2E2_3607 -0.5 -2.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2232 -0.5 -2.4 Virulence factor mviM compare
Pf6N2E2_3806 -0.5 -1.7 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_728 -0.5 -1.2 Nitrate/nitrite transporter compare
Pf6N2E2_4068 -0.5 -3.9 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_344 -0.5 -1.7 hypothetical protein compare
Pf6N2E2_1652 -0.5 -0.7 Transcriptional regulator, TetR family compare
Pf6N2E2_1502 -0.5 -1.2 Two-component system regulatory protein compare
Pf6N2E2_2645 -0.5 -3.0 ATP-dependent DNA helicase RecQ compare
Pf6N2E2_5468 -0.5 -1.1 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_1046 -0.5 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1424 -0.5 -0.9 transcriptional regulator, TetR family compare
Pf6N2E2_5337 -0.5 -2.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_84 -0.5 -1.1 hypothetical protein compare
Pf6N2E2_16 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_2795 -0.5 -1.0 putative exported protein compare
Pf6N2E2_4427 -0.5 -1.0 FIG00954215: hypothetical protein compare
Pf6N2E2_1695 -0.5 -2.1 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf6N2E2_2586 -0.5 -0.7 Hpt domain protein compare
Pf6N2E2_1131 -0.5 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_505 -0.5 -2.0 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress sodium bromide in Pseudomonas fluorescens FW300-N2E2

For stress sodium bromide across organisms