Experiment set7IT030 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.6 -4.5 Tol-Pal system protein TolB compare
IAI47_09040 -4.8 -3.0 NAD-dependent epimerase compare
IAI47_00760 -4.5 -6.2 envelope stress response regulator transcription factor CpxR compare
IAI47_07350 -3.8 -1.4 hypothetical protein compare
IAI47_08085 -3.8 -4.5 helix-turn-helix domain-containing protein compare
IAI47_13700 -3.6 -6.4 Tol-Pal system protein TolQ compare
IAI47_18830 -3.5 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_08705 -3.4 -5.2 carboxy terminal-processing peptidase compare
IAI47_09580 -2.9 -4.3 FNR family transcription factor compare
IAI47_05195 -2.8 -3.3 DnaA inactivator Hda compare
IAI47_00780 -2.8 -4.2 6-phosphofructokinase compare
IAI47_20595 -2.7 -5.3 GhoT/OrtT family toxin compare
IAI47_08700 -2.7 -6.4 RNA chaperone ProQ compare
IAI47_15485 -2.6 -1.6 molecular chaperone Skp compare
IAI47_13690 -2.6 -0.9 cell envelope integrity protein TolA compare
IAI47_00460 -2.6 -3.0 glutamate--ammonia ligase compare
IAI47_17000 -2.6 -13.0 lipoprotein NlpI compare
IAI47_01365 -2.5 -1.7 inorganic phosphate transporter PitA compare
IAI47_05155 -2.5 -16.7 polyphosphate kinase 1 compare
IAI47_05070 -2.4 -0.9 outer membrane protein assembly factor BamB compare
IAI47_11375 -2.4 -2.0 hypothetical protein compare
IAI47_08440 -2.3 -2.2 crossover junction endodeoxyribonuclease RuvC compare
IAI47_10320 -2.3 -1.2 Rrf2 family transcriptional regulator compare
IAI47_07025 -2.2 -7.3 glycosyltransferase family 4 protein compare
IAI47_10835 -2.1 -1.1 tRNA-Val compare
IAI47_06395 -2.1 -2.0 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_00655 -2.1 -4.5 glycosyltransferase family 4 protein compare
IAI47_15635 -2.0 -3.1 RNA polymerase-binding protein DksA compare
IAI47_07020 -2.0 -1.7 hypothetical protein compare
IAI47_09235 -2.0 -1.8 type I DNA topoisomerase compare
IAI47_11515 -1.9 -2.0 hypothetical protein compare
IAI47_05090 -1.9 -4.0 hypothetical protein compare
IAI47_00465 -1.9 -2.9 ribosome-dependent GTPase TypA compare
IAI47_11415 -1.9 -1.8 hypothetical protein compare
IAI47_08450 -1.9 -2.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_09360 -1.9 -1.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_07030 -1.8 -5.3 HAD family hydrolase compare
IAI47_17965 -1.8 -11.7 glucose-6-phosphate isomerase compare
IAI47_11655 -1.7 -2.8 hypothetical protein compare
IAI47_12375 -1.7 -1.9 acyl carrier protein compare
IAI47_18480 -1.7 -9.2 lipid III flippase WzxE compare
IAI47_07165 -1.6 -1.6 exodeoxyribonuclease I compare
IAI47_04705 -1.6 -1.4 hypothetical protein compare
IAI47_21765 -1.6 -2.1 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_11360 -1.6 -1.8 hypothetical protein compare
IAI47_12645 -1.6 -3.7 porin OmpA compare
IAI47_03550 -1.6 -11.7 membrane-bound lytic murein transglycosylase MltC compare
IAI47_21595 -1.5 -10.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_13695 -1.5 -0.7 colicin uptake protein TolR compare
IAI47_12275 -1.5 -10.2 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_07005 -1.5 -3.9 glycosyltransferase family 4 protein compare
IAI47_17120 -1.5 -3.4 BolA family iron metabolism protein IbaG compare
IAI47_09635 -1.5 -3.9 hypothetical protein compare
IAI47_11450 -1.5 -4.0 ankyrin repeat domain-containing protein compare
IAI47_12885 -1.4 -6.4 pyruvate formate lyase 1-activating protein compare
IAI47_04300 -1.4 -5.9 recombinase RecA compare
IAI47_12880 -1.4 -10.3 formate C-acetyltransferase compare
IAI47_05035 -1.4 -2.8 nucleoside-diphosphate kinase compare
IAI47_21355 -1.4 -3.1 DUF3606 domain-containing protein compare
IAI47_13050 -1.4 -3.9 YbjN domain-containing protein compare
IAI47_08680 -1.4 -6.0 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_04800 -1.4 -1.1 RnfH family protein compare
IAI47_12280 -1.3 -7.9 glucan biosynthesis protein G compare
IAI47_16085 -1.3 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_12930 -1.3 -3.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_07515 -1.3 -3.3 hypothetical protein compare
IAI47_08165 -1.3 -5.2 flagella biosynthesis regulatory protein FliZ compare
IAI47_01475 -1.3 -5.9 MurR/RpiR family transcriptional regulator compare
IAI47_11475 -1.3 -1.1 hypothetical protein compare
IAI47_01530 -1.3 -6.1 DUF1145 family protein compare
IAI47_16995 -1.3 -2.1 protein YrbN compare
IAI47_07475 -1.3 -0.8 hypothetical protein compare
IAI47_19945 -1.3 -0.8 hypothetical protein compare
IAI47_03680 -1.3 -8.0 transketolase compare
IAI47_11500 -1.3 -2.2 type VI secretion system tip protein VgrG compare
IAI47_21600 -1.3 -2.5 EamA family transporter compare
IAI47_10725 -1.2 -1.4 DUF1656 domain-containing protein compare
IAI47_13155 -1.2 -1.3 H-NS histone family protein compare
IAI47_13415 -1.2 -8.2 L,D-transpeptidase family protein compare
IAI47_00675 -1.2 -8.6 glycosyltransferase family 9 protein compare
IAI47_21655 -1.2 -0.9 LacI family DNA-binding transcriptional regulator compare
IAI47_06325 -1.2 -4.6 acetate kinase compare
IAI47_00500 -1.2 -8.9 ATP-dependent DNA helicase RecG compare
IAI47_07490 -1.2 -2.3 DNA-binding protein compare
IAI47_07455 -1.2 -3.0 hypothetical protein compare
IAI47_02260 -1.1 -5.9 Zn(2+)-responsive transcriptional regulator compare
IAI47_06135 -1.1 -2.1 phosphohistidine phosphatase SixA compare
IAI47_12470 -1.1 -7.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_15970 -1.1 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_00735 -1.1 -1.6 protein-export chaperone SecB compare
IAI47_17005 -1.1 -4.4 polyribonucleotide nucleotidyltransferase compare
IAI47_19935 -1.1 -3.4 hypothetical protein compare
IAI47_05425 -1.1 -3.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_18470 -1.1 -7.6 ECA oligosaccharide polymerase compare
IAI47_18400 -1.1 -1.7 tyrosine recombinase XerC compare
IAI47_18215 -1.1 -1.7 Trk system potassium transporter TrkH compare
IAI47_17020 -1.1 -2.3 30S ribosome-binding factor RbfA compare
IAI47_07180 -1.0 -4.2 DUF496 family protein compare
IAI47_06245 -1.0 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_00835 -1.0 -2.2 cell division protein ZapB compare
IAI47_09055 -1.0 -6.2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_13195 -1.0 -4.8 DNA starvation/stationary phase protection protein Dps compare
IAI47_12770 -1.0 -4.4 MBL fold metallo-hydrolase compare
IAI47_00505 -1.0 -5.0 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_01345 -1.0 -7.2 oligopeptidase A compare
IAI47_12925 -1.0 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_13480 -1.0 -2.2 molybdopterin synthase sulfur carrier subunit compare
IAI47_20680 -1.0 -3.1 hypothetical protein compare
IAI47_06595 -1.0 -2.6 hypothetical protein compare
IAI47_06040 -1.0 -2.8 DNA polymerase V compare
IAI47_17645 -1.0 -3.1 hypothetical protein compare
IAI47_13840 -0.9 -2.4 replication initiation negative regulator SeqA compare
IAI47_18250 -0.9 -4.6 transcription/translation regulatory transformer protein RfaH compare
IAI47_03820 -0.9 -2.2 site-specific tyrosine recombinase XerD compare
IAI47_17255 -0.9 -2.0 DUF1043 family protein compare
IAI47_20480 -0.9 -3.4 YfiR family protein compare
IAI47_03375 -0.9 -5.4 peptide chain release factor 3 compare
IAI47_14295 -0.9 -1.7 hypothetical protein compare
IAI47_20440 -0.9 -2.4 SDR family oxidoreductase compare
IAI47_08445 -0.9 -0.8 Holliday junction branch migration protein RuvA compare
IAI47_07355 -0.9 -4.0 winged helix-turn-helix domain-containing protein compare
IAI47_00940 -0.9 -4.3 HTH-type transcriptional repressor FabR compare
IAI47_00300 -0.9 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00430 -0.9 -6.8 DNA polymerase I compare
IAI47_04335 -0.9 -2.6 tRNA-Arg compare
IAI47_07450 -0.9 -1.9 winged helix-turn-helix domain-containing protein compare
IAI47_19295 -0.9 -1.3 hypothetical protein compare
IAI47_19890 -0.9 -1.1 hypothetical protein compare
IAI47_20600 -0.9 -1.0 hypothetical protein compare
IAI47_07360 -0.9 -1.7 hypothetical protein compare
IAI47_13065 -0.9 -1.3 DUF1418 family protein compare
IAI47_03440 -0.9 -2.8 general stress protein compare
IAI47_01000 -0.8 -6.5 HTH-type transcriptional regulator HdfR compare
IAI47_13355 -0.8 -5.8 DMT family transporter compare
IAI47_03725 -0.8 -5.0 phosphoglycerate dehydrogenase compare
IAI47_21675 -0.8 -3.0 helix-turn-helix domain-containing protein compare
IAI47_07000 -0.8 -4.2 UDP-glucose 4-epimerase GalE compare
IAI47_02990 -0.8 -4.6 hypothetical protein compare
IAI47_16520 -0.8 -5.1 hypothetical protein compare
IAI47_10545 -0.8 -1.6 hypothetical protein compare
IAI47_08200 -0.8 -2.1 hypothetical protein compare
IAI47_13625 -0.8 -3.9 CDF family zinc transporter ZitB compare
IAI47_02255 -0.8 -5.0 DUF1992 domain-containing protein compare
IAI47_06965 -0.8 -1.2 glycosyltransferase family 2 protein compare
IAI47_17165 -0.8 -5.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_17235 -0.8 -4.5 stringent starvation protein A compare
IAI47_05660 -0.8 -3.6 serine protease compare
IAI47_05120 -0.8 -1.5 DUF2158 domain-containing protein compare
IAI47_00670 -0.8 -6.0 sugar glycosyltransferase compare
IAI47_05690 -0.8 -2.6 hypothetical protein compare
IAI47_07905 -0.8 -0.5 Arc family DNA-binding protein compare
IAI47_10745 -0.8 -2.2 superoxide dismutase family protein compare
IAI47_16195 -0.7 -4.4 transaldolase compare
IAI47_03590 -0.7 -3.3 YggT family protein compare
IAI47_05665 -0.7 -2.4 hypothetical protein compare
IAI47_05795 -0.7 -2.7 hypothetical protein compare
IAI47_07525 -0.7 -1.3 conjugal transfer protein TraD compare
IAI47_19825 -0.7 -3.7 EAL domain-containing protein compare
IAI47_21790 -0.7 -2.7 helix-turn-helix domain-containing protein compare
IAI47_15540 -0.7 -4.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_08335 -0.7 -2.9 chemotaxis response regulator CheY compare
IAI47_21665 -0.7 -1.3 DUF333 domain-containing protein compare
IAI47_10755 -0.7 -0.9 DUF1289 domain-containing protein compare
IAI47_18015 -0.7 -5.3 homoserine O-succinyltransferase compare
IAI47_11550 -0.7 -1.3 hypothetical protein compare
IAI47_14205 -0.7 -3.5 hypothetical protein compare
IAI47_11425 -0.7 -2.1 hypothetical protein compare
IAI47_08940 -0.7 -3.0 D-hexose-6-phosphate mutarotase compare
IAI47_14555 -0.7 -1.7 hemolysin expression modulator Hha compare
IAI47_10340 -0.7 -3.1 mannose-6-phosphate isomerase compare
IAI47_09380 -0.7 -3.1 peptide ABC transporter substrate-binding protein SapA compare
IAI47_12260 -0.7 -2.2 hypothetical protein compare
IAI47_20175 -0.7 -3.2 ABC transporter ATP-binding protein compare
IAI47_04695 -0.7 -2.3 hypothetical protein compare
IAI47_08065 -0.7 -2.8 acyltransferase compare
IAI47_10840 -0.7 -1.7 pyruvate kinase PykF compare
IAI47_18520 -0.7 -5.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_01610 -0.7 -2.8 glycerophosphodiester phosphodiesterase compare
IAI47_13720 -0.7 -2.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_16810 -0.7 -5.2 hypothetical protein compare
IAI47_02750 -0.7 -5.7 class 1 fructose-bisphosphatase compare
IAI47_12650 -0.7 -2.5 macrodomain Ter protein MatP compare
IAI47_14940 -0.7 -1.1 YaiI/YqxD family protein compare
IAI47_07015 -0.7 -3.0 ABC transporter ATP-binding protein compare
IAI47_17200 -0.7 -4.3 RNase adapter RapZ compare
IAI47_19950 -0.7 -3.0 SDR family oxidoreductase compare
IAI47_02090 -0.7 -2.0 elongation factor Tu compare
IAI47_17790 -0.7 -3.2 transposase compare
IAI47_14750 -0.6 -2.9 phosphatidylglycerophosphatase A compare
IAI47_16545 -0.6 -4.1 restriction endonuclease subunit S compare
IAI47_21235 -0.6 -1.3 hypothetical protein compare
IAI47_10430 -0.6 -1.1 hypothetical protein compare
IAI47_07055 -0.6 -2.3 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_06330 -0.6 -3.8 DUF412 domain-containing protein compare
IAI47_00720 -0.6 -4.8 murein hydrolase activator EnvC compare
IAI47_15430 -0.6 -3.8 cytochrome c compare
IAI47_18775 -0.6 -2.7 hypothetical protein compare
IAI47_02585 -0.6 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_18705 -0.6 -3.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_11670 -0.6 -2.7 type VI secretion system protein TssA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms