Experiment set7IT030 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05561 +2.8 18.5 transcriptional regulator, TetR family compare
H281DRAFT_00717 +1.7 3.6 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_00255 +1.6 2.7 hypothetical protein compare
H281DRAFT_01108 +1.4 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04415 +1.4 2.1 phosphate uptake regulator, PhoU compare
H281DRAFT_04226 +1.3 2.1 hypothetical protein compare
H281DRAFT_05974 +1.3 2.2 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_01121 +1.2 3.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05962 +1.2 1.6 RraA famliy compare
H281DRAFT_06297 +1.2 2.6 L-arabinose-binding protein compare
H281DRAFT_05003 +1.2 2.6 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
H281DRAFT_06037 +1.2 2.0 molybdate transport system substrate-binding protein compare
H281DRAFT_05110 +1.1 2.4 transcriptional regulator, MarR family compare
H281DRAFT_02007 +1.1 9.8 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01518 +1.1 2.4 D-mannonate dehydratase (EC 4.2.1.8) compare
H281DRAFT_02008 +1.1 5.7 phosphocarrier protein compare
H281DRAFT_00753 +1.1 2.3 Protein of unknown function (DUF1488) compare
H281DRAFT_06356 +1.1 2.6 RraA famliy compare
H281DRAFT_01284 +1.1 3.2 transcriptional regulator, LysR family compare
H281DRAFT_06056 +1.1 8.4 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_01190 +1.1 1.8 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_00819 +1.1 1.4 competence protein ComEA compare
H281DRAFT_01632 +1.1 8.2 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_06576 +1.0 2.8 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_04932 +1.0 2.6 MbtH protein compare
H281DRAFT_02890 +1.0 2.4 peroxiredoxin (alkyl hydroperoxide reductase subunit C) compare
H281DRAFT_02574 +1.0 2.2 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_04858 +1.0 1.3 hypothetical protein compare
H281DRAFT_05768 +1.0 3.5 flagellar L-ring protein precursor FlgH compare
H281DRAFT_00406 +1.0 2.3 Signal transduction histidine kinase compare
H281DRAFT_01107 +1.0 1.4 hypothetical protein compare
H281DRAFT_01372 +1.0 2.4 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_04552 +0.9 2.9 acetolactate synthase, small subunit compare
H281DRAFT_00248 +0.9 1.7 hypothetical protein compare
H281DRAFT_00015 +0.9 2.5 hypothetical protein compare
H281DRAFT_01883 +0.9 1.2 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_02741 +0.9 2.0 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_04855 +0.9 1.5 hypothetical protein compare
H281DRAFT_02742 +0.9 2.5 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_06194 +0.9 2.3 Proteolipid membrane potential modulator compare
H281DRAFT_02230 +0.9 3.7 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_04894 +0.9 3.6 inner membrane transporter RhtA compare
H281DRAFT_01303 +0.9 2.3 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_01069 +0.9 1.4 Cytosine/adenosine deaminase compare
H281DRAFT_05476 +0.9 2.0 Short-chain dehydrogenase compare
H281DRAFT_00102 +0.9 2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_03815 +0.8 2.7 D-glucarate dehydratase compare
H281DRAFT_02548 +0.8 1.3 Uncharacterized membrane protein YoaK, UPF0700 family compare
H281DRAFT_04954 +0.8 3.0 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_05123 +0.8 2.1 hypothetical protein compare
H281DRAFT_04929 +0.8 2.1 hypothetical protein compare
H281DRAFT_01322 +0.8 1.1 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_01827 +0.8 1.2 hypothetical protein compare
H281DRAFT_05755 +0.8 2.3 flagellar biosynthesis protein FlhG compare
H281DRAFT_03083 +0.8 2.4 Redoxin compare
H281DRAFT_00075 +0.8 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06466 +0.8 2.5 luciferase family oxidoreductase, group 1 compare
H281DRAFT_00706 +0.8 0.9 outer membrane protein compare
H281DRAFT_02718 +0.8 2.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05949 +0.8 2.4 gluconolactonase compare
H281DRAFT_02931 +0.8 3.6 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_06422 +0.8 1.1 hypothetical protein compare
H281DRAFT_02474 +0.8 2.6 electron transfer flavoprotein beta subunit compare
H281DRAFT_01025 +0.8 1.2 transcriptional regulator, MarR family compare
H281DRAFT_00254 +0.8 4.4 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_05313 +0.8 4.1 Polygalacturonase compare
H281DRAFT_02441 +0.8 1.1 putative ABC transport system ATP-binding protein compare
H281DRAFT_01480 +0.8 1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_00419 +0.8 1.7 transcriptional regulator, LacI family compare
H281DRAFT_02246 +0.8 5.9 phosphoenolpyruvate carboxykinase (GTP) compare
H281DRAFT_01111 +0.8 1.1 transcriptional regulator, DeoR family compare
H281DRAFT_05097 +0.8 2.1 putative transposase compare
H281DRAFT_06308 +0.7 1.8 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
H281DRAFT_03387 +0.7 2.1 2-polyprenyl-6-methoxyphenol hydroxylase compare
H281DRAFT_00996 +0.7 1.3 ChrR Cupin-like domain-containing protein compare
H281DRAFT_04482 +0.7 1.4 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_02910 +0.7 1.5 conserved hypothetical protein compare
H281DRAFT_02720 +0.7 1.8 GAF domain-containing protein compare
H281DRAFT_06388 +0.7 1.6 Sugar phosphate permease compare
H281DRAFT_06266 +0.7 2.3 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_05955 +0.7 2.6 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_00050 +0.7 1.0 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_00240 +0.7 4.4 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_04889 +0.7 1.2 hypothetical protein compare
H281DRAFT_00648 +0.7 1.8 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_01401 +0.7 2.6 Polyisoprenoid-binding protein YceI compare
H281DRAFT_06363 +0.7 2.9 hypothetical protein compare
H281DRAFT_01188 +0.7 2.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05183 +0.7 0.7 putrescine transport system permease protein compare
H281DRAFT_04234 +0.7 1.9 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_02504 +0.7 3.4 Alkylhydroperoxidase family enzyme, contains CxxC motif compare
H281DRAFT_00106 +0.7 2.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00769 +0.7 1.5 hypothetical protein compare
H281DRAFT_01644 +0.7 1.4 muconolactone delta-isomerase compare
H281DRAFT_03646 +0.7 2.8 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit compare
H281DRAFT_01403 +0.7 0.9 hypothetical protein compare
H281DRAFT_06474 +0.7 1.8 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_06377 +0.7 2.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02941 +0.7 1.8 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_05856 +0.7 2.6 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC compare
H281DRAFT_06170 +0.7 2.1 hypothetical protein compare
H281DRAFT_00664 +0.7 1.5 assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1) compare
H281DRAFT_06081 +0.7 1.7 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_00940 +0.7 2.0 psiF repeat-containing protein compare
H281DRAFT_01519 +0.7 1.9 fructuronate reductase compare
H281DRAFT_02750 +0.7 1.7 hypothetical protein compare
H281DRAFT_01240 +0.7 3.3 hypothetical protein compare
H281DRAFT_05943 +0.7 1.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_00386 +0.7 1.8 hypothetical protein compare
H281DRAFT_02856 +0.7 1.1 Protein of unknown function (DUF1488) compare
H281DRAFT_02940 +0.7 1.2 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_02944 +0.7 1.6 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_02677 +0.6 1.9 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_05102 +0.6 2.5 ribosome maturation factor RimP compare
H281DRAFT_05070 +0.6 2.1 camphor resistance protein CrcB compare
H281DRAFT_01474 +0.6 0.6 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_05210 +0.6 1.0 Sugar phosphate isomerase/epimerase compare
H281DRAFT_01125 +0.6 1.1 protein of unknown function (DUF2760) compare
H281DRAFT_04427 +0.6 1.0 hypothetical protein compare
H281DRAFT_06376 +0.6 1.9 transcriptional regulator, LysR family compare
H281DRAFT_04930 +0.6 1.5 Cupin domain compare
H281DRAFT_01750 +0.6 2.2 PAS domain S-box-containing protein compare
H281DRAFT_06163 +0.6 0.8 hypothetical protein compare
H281DRAFT_03986 +0.6 1.4 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_03184 +0.6 0.8 cation diffusion facilitator family transporter compare
H281DRAFT_02614 +0.6 1.8 L-glutamine ABC transporter membrane protein compare
H281DRAFT_00782 +0.6 2.3 transcriptional regulator, LysR family compare
H281DRAFT_03835 +0.6 1.7 NitT/TauT family transport system permease protein compare
H281DRAFT_01513 +0.6 2.3 hippurate hydrolase compare
H281DRAFT_01377 +0.6 1.0 hypothetical protein compare
H281DRAFT_02610 +0.6 1.9 methyl-accepting chemotaxis sensory transducer with Cache sensor compare
H281DRAFT_05888 +0.6 1.8 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01207 +0.6 2.1 SPFH domain, Band 7 family protein compare
H281DRAFT_06074 +0.6 1.2 entericidin A compare
H281DRAFT_05744 +0.6 1.5 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_05090 +0.6 2.0 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_03320 +0.6 1.8 Uncharacterized conserved protein compare
H281DRAFT_00269 +0.6 2.0 phenazine biosynthesis protein PhzF family compare
H281DRAFT_00815 +0.6 2.4 hemoglobin compare
H281DRAFT_03299 +0.6 1.3 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_01039 +0.6 1.2 probable biosynthetic protein, Pnap_2097 family compare
H281DRAFT_00997 +0.6 2.2 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_05885 +0.6 1.5 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_00925 +0.6 3.2 Uncharacterized conserved protein, contains NRDE domain compare
H281DRAFT_00779 +0.6 1.3 sulfate transport system permease protein compare
H281DRAFT_02710 +0.6 2.3 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_02698 +0.6 1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05121 +0.6 1.2 hypothetical protein compare
H281DRAFT_03705 +0.6 2.1 transcriptional regulator, GntR family compare
H281DRAFT_06369 +0.6 1.9 tight adherence protein B compare
H281DRAFT_00733 +0.6 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05331 +0.6 1.9 hypothetical protein compare
H281DRAFT_05722 +0.6 2.1 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) (from data) compare
H281DRAFT_02052 +0.6 1.2 hypothetical protein compare
H281DRAFT_06462 +0.6 0.8 hypothetical protein compare
H281DRAFT_06484 +0.6 1.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04671 +0.6 2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
H281DRAFT_00405 +0.6 0.8 Predicted small secreted protein compare
H281DRAFT_01028 +0.6 0.8 peptide/nickel transport system permease protein compare
H281DRAFT_01205 +0.6 3.4 transcriptional regulator, AraC family compare
H281DRAFT_04533 +0.6 2.4 two-component system, OmpR family, KDP operon response regulator KdpE compare
H281DRAFT_05899 +0.6 1.7 hypothetical protein compare
H281DRAFT_01287 +0.6 0.8 mxaK protein compare
H281DRAFT_06078 +0.6 1.7 protein of unknown function (DUF4148) compare
H281DRAFT_06329 +0.6 2.1 transcriptional regulator, AraC family compare
H281DRAFT_02817 +0.6 2.2 hypothetical protein compare
H281DRAFT_00687 +0.6 1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_02609 +0.6 2.2 two-component system, OmpR family, sensor kinase compare
H281DRAFT_01194 +0.6 2.1 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) compare
H281DRAFT_01417 +0.6 1.2 anti-sigma-28 factor, FlgM family compare
H281DRAFT_03717 +0.6 1.0 Rhodanese-related sulfurtransferase compare
H281DRAFT_03684 +0.6 1.5 Protein N-acetyltransferase, RimJ/RimL family compare
H281DRAFT_06295 +0.6 1.3 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_05678 +0.6 1.3 hypothetical protein compare
H281DRAFT_01533 +0.6 0.8 transcriptional regulator, LysR family compare
H281DRAFT_05075 +0.6 1.2 hypothetical protein compare
H281DRAFT_03536 +0.6 3.5 acetyltransferase compare
H281DRAFT_03302 +0.6 1.3 Hemerythrin HHE cation binding domain-containing protein compare
H281DRAFT_04158 +0.6 1.9 sorbitol ABC transporter membrane protein /mannitol ABC transporter membrane protein compare
H281DRAFT_00235 +0.6 0.9 hypothetical protein compare
H281DRAFT_03064 +0.6 1.7 Uncharacterized conserved protein compare
H281DRAFT_00506 +0.6 0.7 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_02556 +0.6 0.7 Outer membrane protein (porin) compare
H281DRAFT_05218 +0.6 1.7 LTXXQ motif family protein compare
H281DRAFT_04745 +0.6 1.4 hypothetical protein compare
H281DRAFT_01792 +0.5 2.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05468 +0.5 1.4 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_03828 +0.5 2.4 MFS transporter, ACS family, hexuronate transporter compare
H281DRAFT_01094 +0.5 1.1 protein of unknown function (DUF3331) compare
H281DRAFT_03050 +0.5 1.6 Mannose-6-phosphate isomerase, cupin superfamily compare
H281DRAFT_00021 +0.5 1.1 hypothetical protein compare
H281DRAFT_00169 +0.5 0.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03599 +0.5 1.3 Putative zinc-finger compare
H281DRAFT_05953 +0.5 1.3 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_06069 +0.5 2.3 tRNA pseudouridine38-40 synthase compare
H281DRAFT_05203 +0.5 2.0 Protein of unknown function (DUF2795) compare
H281DRAFT_03748 +0.5 1.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03518 +0.5 1.7 hypothetical protein compare
H281DRAFT_05418 +0.5 1.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_01584 +0.5 0.8 enamidase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Sodium propionate across organisms