Experiment set7IT029 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium acetate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_00506 +1.7 2.6 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_06190 +1.4 1.7 DNA-binding protein H-NS compare
H281DRAFT_01042 +1.4 3.6 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_01190 +1.2 2.3 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_03820 +1.2 2.2 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_05768 +1.2 3.3 flagellar L-ring protein precursor FlgH compare
H281DRAFT_01071 +1.1 1.7 muconolactone delta-isomerase (EC 5.3.3.4) compare
H281DRAFT_00757 +1.1 1.4 hypothetical protein compare
H281DRAFT_01493 +1.1 2.5 aspartate carbamoyltransferase compare
H281DRAFT_00419 +1.1 2.9 transcriptional regulator, LacI family compare
H281DRAFT_03717 +1.0 2.2 Rhodanese-related sulfurtransferase compare
H281DRAFT_01107 +1.0 1.5 hypothetical protein compare
H281DRAFT_05744 +1.0 2.4 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_00996 +1.0 1.9 ChrR Cupin-like domain-containing protein compare
H281DRAFT_05221 +1.0 2.5 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_05887 +1.0 1.6 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05314 +1.0 1.8 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_05123 +1.0 1.7 hypothetical protein compare
H281DRAFT_05899 +1.0 2.2 hypothetical protein compare
H281DRAFT_00949 +0.9 2.4 Glycosyltransferase, GT2 family compare
H281DRAFT_03297 +0.9 1.5 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_01412 +0.9 1.9 Superinfection immunity protein compare
H281DRAFT_06056 +0.9 7.5 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_04947 +0.9 2.2 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06422 +0.9 1.1 hypothetical protein compare
H281DRAFT_00375 +0.9 1.2 benzoyl-CoA oxygenase, component A compare
H281DRAFT_02052 +0.9 1.2 hypothetical protein compare
H281DRAFT_05943 +0.9 1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_00106 +0.9 1.5 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04039 +0.9 1.8 hypothetical protein compare
H281DRAFT_01512 +0.9 1.7 transcriptional regulator, IclR family compare
H281DRAFT_03611 +0.9 1.5 hopanoid-associated phosphorylase compare
H281DRAFT_04933 +0.9 1.5 Nitroreductase compare
H281DRAFT_01756 +0.9 2.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_06285 +0.8 2.3 3-dehydroquinate dehydratase compare
H281DRAFT_00240 +0.8 5.7 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_02903 +0.8 2.3 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_03017 +0.8 1.8 ketopantoate reductase compare
H281DRAFT_03725 +0.8 2.6 hypothetical protein compare
H281DRAFT_03810 +0.8 1.4 citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family compare
H281DRAFT_01827 +0.8 1.3 hypothetical protein compare
H281DRAFT_03599 +0.8 2.8 Putative zinc-finger compare
H281DRAFT_01632 +0.8 5.1 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01001 +0.8 2.6 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_02698 +0.8 2.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02183 +0.8 1.4 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_06484 +0.8 2.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04788 +0.8 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05000 +0.8 1.6 ATP synthase in type III secretion protein N compare
H281DRAFT_04858 +0.8 1.0 hypothetical protein compare
H281DRAFT_06046 +0.8 1.1 serine/threonine protein phosphatase 1 compare
H281DRAFT_02706 +0.8 2.3 L-fuculose-phosphate aldolase compare
H281DRAFT_03981 +0.8 1.9 Uncharacterized membrane protein compare
H281DRAFT_03118 +0.8 1.4 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_06367 +0.8 1.4 pilus assembly protein CpaE compare
H281DRAFT_01452 +0.7 3.1 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_02007 +0.7 6.3 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01098 +0.7 2.4 hypothetical protein compare
H281DRAFT_00248 +0.7 1.6 hypothetical protein compare
H281DRAFT_01701 +0.7 1.4 hypothetical protein compare
H281DRAFT_05121 +0.7 1.6 hypothetical protein compare
H281DRAFT_05888 +0.7 2.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03094 +0.7 1.0 transcriptional regulator, MarR family compare
H281DRAFT_01837 +0.7 1.4 hypothetical protein compare
H281DRAFT_05468 +0.7 1.6 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_02791 +0.7 1.2 apolipoprotein D and lipocalin family protein compare
H281DRAFT_02692 +0.7 1.9 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_03713 +0.7 2.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03367 +0.7 1.0 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_05545 +0.7 1.2 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_04937 +0.7 1.6 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_00717 +0.7 1.3 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_01326 +0.7 1.9 formylmethanofuran-tetrahydromethanopterin formyltransferase /formyltransferase/hydrolase complex subunit D compare
H281DRAFT_03320 +0.7 2.1 Uncharacterized conserved protein compare
H281DRAFT_06090 +0.7 2.8 N-ethylmaleimide reductase compare
H281DRAFT_05537 +0.7 1.0 transcriptional regulator, IclR family compare
H281DRAFT_05483 +0.7 2.2 protein of unknown function (DUF1840) compare
H281DRAFT_06175 +0.7 2.0 DNA repair exonuclease compare
H281DRAFT_01742 +0.7 1.8 putative oxidoreductase compare
H281DRAFT_03859 +0.7 2.9 hypothetical protein compare
H281DRAFT_03890 +0.7 1.6 Broad specificity phosphatase PhoE compare
H281DRAFT_02985 +0.7 1.5 copper chaperone compare
H281DRAFT_00753 +0.7 1.3 Protein of unknown function (DUF1488) compare
H281DRAFT_05281 +0.7 1.0 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_05755 +0.7 1.8 flagellar biosynthesis protein FlhG compare
H281DRAFT_03801 +0.7 2.2 two component transcriptional regulator, winged helix family compare
H281DRAFT_05159 +0.7 1.5 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_06135 +0.7 1.2 hypothetical protein compare
H281DRAFT_01289 +0.7 1.0 mxaA protein compare
H281DRAFT_01687 +0.7 1.7 carbonic anhydrase compare
H281DRAFT_04008 +0.7 1.5 RNAse PH compare
H281DRAFT_03303 +0.7 2.0 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_04878 +0.7 1.6 transcriptional regulator, ArsR family compare
H281DRAFT_00426 +0.7 2.1 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_02955 +0.7 1.4 NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family compare
H281DRAFT_00679 +0.7 2.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01390 +0.7 1.1 hypothetical protein compare
H281DRAFT_04773 +0.7 1.5 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_01477 +0.7 1.8 protein CcmA, bactofilin family compare
H281DRAFT_00958 +0.7 1.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
H281DRAFT_04869 +0.7 1.2 imidazolonepropionase compare
H281DRAFT_02574 +0.6 1.6 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_00021 +0.6 2.3 hypothetical protein compare
H281DRAFT_00072 +0.6 1.6 hypothetical protein compare
H281DRAFT_06388 +0.6 1.3 Sugar phosphate permease compare
H281DRAFT_04415 +0.6 0.8 phosphate uptake regulator, PhoU compare
H281DRAFT_00050 +0.6 0.8 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_00806 +0.6 1.9 Membrane transporters of cations and cationic drugs compare
H281DRAFT_00920 +0.6 1.8 transcriptional regulator, GntR family compare
H281DRAFT_03184 +0.6 0.8 cation diffusion facilitator family transporter compare
H281DRAFT_00773 +0.6 1.9 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_01050 +0.6 2.0 maleylacetate reductase compare
H281DRAFT_02755 +0.6 2.5 Uncharacterized membrane protein compare
H281DRAFT_05999 +0.6 2.7 hypothetical protein compare
H281DRAFT_00469 +0.6 2.8 phasin family protein compare
H281DRAFT_00255 +0.6 1.5 hypothetical protein compare
H281DRAFT_00769 +0.6 1.4 hypothetical protein compare
H281DRAFT_06532 +0.6 3.1 protein of unknown function (DUF4136) compare
H281DRAFT_02560 +0.6 1.6 LPS-assembly protein compare
H281DRAFT_00298 +0.6 1.3 hypothetical protein compare
H281DRAFT_03345 +0.6 1.8 NHL repeat-containing protein compare
H281DRAFT_03815 +0.6 1.6 D-glucarate dehydratase compare
H281DRAFT_05252 +0.6 2.5 amino acid adenylation domain-containing protein compare
H281DRAFT_03748 +0.6 1.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02785 +0.6 2.1 DNA polymerase compare
H281DRAFT_03278 +0.6 0.9 Threonine dehydrogenase compare
H281DRAFT_06490 +0.6 1.2 hypothetical protein compare
H281DRAFT_00993 +0.6 2.9 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
H281DRAFT_05743 +0.6 1.5 CheW protein compare
H281DRAFT_04044 +0.6 2.9 D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55 compare
H281DRAFT_03790 +0.6 1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_02747 +0.6 1.6 hypothetical protein compare
H281DRAFT_06163 +0.6 0.8 hypothetical protein compare
H281DRAFT_02509 +0.6 2.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03620 +0.6 2.1 acylphosphatase compare
H281DRAFT_06297 +0.6 1.1 L-arabinose-binding protein compare
H281DRAFT_00704 +0.6 2.8 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_01767 +0.6 0.9 hypothetical protein compare
H281DRAFT_00687 +0.6 1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_01502 +0.6 2.3 Protein of unknown function (DUF2917) compare
H281DRAFT_03415 +0.6 2.6 polyphosphate kinase 2, PA0141 family compare
H281DRAFT_05778 +0.6 1.1 flagellar motor switch protein FliN/FliY compare
H281DRAFT_02643 +0.6 0.9 hypothetical protein compare
H281DRAFT_01032 +0.6 2.6 peptide/nickel transport system ATP-binding protein compare
H281DRAFT_05485 +0.6 1.9 Group II intron, maturase-specific domain compare
H281DRAFT_01105 +0.6 1.4 transcriptional regulator, AraC family compare
H281DRAFT_01709 +0.6 2.1 hypothetical protein compare
H281DRAFT_01136 +0.6 1.7 5-(hydroxymethyl)furfural/furfural oxidase compare
H281DRAFT_05793 +0.6 2.4 putative acyl-CoA dehydrogenase compare
H281DRAFT_02058 +0.6 0.8 cholesterol transport system auxiliary component compare
H281DRAFT_06355 +0.6 1.7 4-oxalomesaconate hydratase compare
H281DRAFT_06453 +0.6 3.0 Protein required for attachment to host cells compare
H281DRAFT_05861 +0.6 2.6 16S rRNA. Bacterial SSU compare
H281DRAFT_00254 +0.6 3.3 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00091 +0.6 1.5 urea transport system ATP-binding protein compare
H281DRAFT_02484 +0.6 2.0 transcriptional regulator, GntR family compare
H281DRAFT_05811 +0.6 1.5 UPF0271 protein compare
H281DRAFT_00601 +0.6 1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_05045 +0.6 2.4 amidase compare
H281DRAFT_04889 +0.6 1.1 hypothetical protein compare
H281DRAFT_06393 +0.6 1.6 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_00073 +0.6 1.2 hypothetical protein compare
H281DRAFT_02619 +0.5 2.0 N-acyl-D-amino-acid deacylase compare
H281DRAFT_05804 +0.5 2.3 dipeptide transport system permease protein compare
H281DRAFT_03234 +0.5 1.0 chemotaxis protein MotA compare
H281DRAFT_02459 +0.5 1.1 sarcosine oxidase subunit gamma compare
H281DRAFT_04150 +0.5 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_02702 +0.5 0.8 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_06356 +0.5 0.7 RraA famliy compare
H281DRAFT_04609 +0.5 1.6 hypothetical protein compare
H281DRAFT_03854 +0.5 2.3 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_00196 +0.5 2.0 Ubiquinone/menaquinone biosynthesis C-methylase UbiE compare
H281DRAFT_00406 +0.5 1.4 Signal transduction histidine kinase compare
H281DRAFT_02193 +0.5 0.6 hypothetical protein compare
H281DRAFT_00657 +0.5 1.4 crotonobetaine/carnitine-CoA ligase compare
H281DRAFT_06556 +0.5 1.0 hypothetical protein compare
H281DRAFT_03844 +0.5 1.4 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_04863 +0.5 1.7 hypothetical protein compare
H281DRAFT_05883 +0.5 2.4 ornithine cyclodeaminase (EC 4.3.1.12) compare
H281DRAFT_00782 +0.5 1.4 transcriptional regulator, LysR family compare
H281DRAFT_02467 +0.5 1.1 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_01094 +0.5 1.2 protein of unknown function (DUF3331) compare
H281DRAFT_03429 +0.5 0.9 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_06581 +0.5 1.5 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04158 +0.5 2.0 sorbitol ABC transporter membrane protein /mannitol ABC transporter membrane protein compare
H281DRAFT_00997 +0.5 2.1 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_03477 +0.5 2.1 hypothetical protein compare
H281DRAFT_03702 +0.5 1.4 transcriptional regulator, MarR family compare
H281DRAFT_03644 +0.5 0.8 betaine-aldehyde dehydrogenase compare
H281DRAFT_01188 +0.5 2.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_04958 +0.5 1.4 glutamate racemase compare
H281DRAFT_02561 +0.5 0.6 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04175 +0.5 1.8 Carbon monoxide dehydrogenase subunit G compare
H281DRAFT_05893 +0.5 0.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03488 +0.5 1.5 Predicted amidohydrolase compare
H281DRAFT_04676 +0.5 0.7 hypothetical protein compare
H281DRAFT_05279 +0.5 0.8 malonate decarboxylase beta subunit compare
H281DRAFT_02931 +0.5 3.1 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_05267 +0.5 1.3 3-hydroxypropanoate dehydrogenase compare
H281DRAFT_02479 +0.5 1.6 transcriptional regulator, LysR family compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Sodium acetate across organisms