Experiment set7IT028 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sisomicin sulfate salt 0.0016 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5252 -6.2 -4.3 FIG00956396: hypothetical protein compare
Pf6N2E2_4187 -4.2 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3612 -3.9 -3.8 HflK protein compare
Pf6N2E2_3611 -3.7 -2.5 HflC protein compare
Pf6N2E2_3261 -3.5 -6.0 hypothetical protein compare
Pf6N2E2_4272 -3.3 -5.4 putative membrane protein compare
Pf6N2E2_5014 -3.2 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4077 -3.0 -3.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3656 -2.8 -8.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_5340 -2.7 -5.6 Stringent starvation protein A compare
Pf6N2E2_2277 -2.6 -3.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4369 -2.5 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_288 -2.4 -3.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5150 -2.4 -7.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3257 -2.3 -5.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5178 -2.3 -2.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3826 -2.1 -5.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3655 -2.1 -11.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4797 -2.0 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4599 -2.0 -3.3 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_4206 -1.9 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5430 -1.9 -9.6 Transglycosylase, Slt family compare
Pf6N2E2_3198 -1.8 -2.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3134 -1.8 -1.5 hypothetical protein compare
Pf6N2E2_4414 -1.8 -2.0 FIG00953808: hypothetical protein compare
Pf6N2E2_4352 -1.7 -3.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_445 -1.7 -6.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4072 -1.7 -4.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3264 -1.6 -1.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3792 -1.6 -4.9 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2218 -1.5 -4.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2605 -1.5 -4.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5190 -1.5 -8.5 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2706 -1.4 -3.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5520 -1.4 -5.8 Sensory box histidine kinase compare
Pf6N2E2_4120 -1.4 -8.6 Trk system potassium uptake protein TrkA compare
Pf6N2E2_4416 -1.4 -2.5 Tyrosine recombinase XerC compare
Pf6N2E2_621 -1.4 -6.2 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3791 -1.4 -8.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3825 -1.4 -3.3 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3908 -1.4 -5.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5714 -1.4 -2.8 Flavoprotein WrbA compare
Pf6N2E2_2425 -1.4 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3258 -1.3 -4.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3770 -1.3 -2.4 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_5733 -1.3 -4.9 NLP/P60 family protein compare
Pf6N2E2_1239 -1.3 -6.4 Putative TEGT family carrier/transport protein conserved
Pf6N2E2_5425 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_4273 -1.3 -5.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_623 -1.3 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_2707 -1.2 -3.1 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_620 -1.2 -5.6 BatD compare
Pf6N2E2_1617 -1.2 -1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_6065 -1.2 -1.9 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5494 -1.2 -4.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5739 -1.2 -1.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_4624 -1.1 -1.1 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4537 -1.1 -2.3 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_622 -1.1 -2.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4454 -1.1 -4.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_37 -1.1 -3.1 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_4733 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_4743 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_5758 -1.1 -2.5 FIG00957314: hypothetical protein compare
Pf6N2E2_3260 -1.1 -4.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_423 -1.1 -1.8 Putative phosphatase YfbT compare
Pf6N2E2_4618 -1.1 -3.2 Chemotaxis signal transduction protein compare
Pf6N2E2_2480 -1.0 -1.4 FIG00957636: hypothetical protein compare
Pf6N2E2_2708 -1.0 -3.2 Lactam utilization protein LamB compare
Pf6N2E2_4391 -1.0 -4.3 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_1128 -1.0 -1.8 Two-component response regulator compare
Pf6N2E2_2940 -1.0 -4.4 OmpA family protein compare
Pf6N2E2_3841 -1.0 -4.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_586 -1.0 -5.1 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_2496 -1.0 -1.6 FIG00956575: hypothetical protein compare
Pf6N2E2_4764 -1.0 -2.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5261 -1.0 -1.2 FIG00956983: hypothetical protein compare
Pf6N2E2_5728 -1.0 -2.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1917 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_5766 -1.0 -0.7 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_6035 -1.0 -2.5 alpha/beta hydrolase fold compare
Pf6N2E2_5508 -1.0 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5188 -1.0 -3.5 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_625 -1.0 -3.7 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3477 -0.9 -2.0 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2634 -0.9 -5.5 Potassium uptake protein TrkH compare
Pf6N2E2_4367 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_2264 -0.9 -3.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5757 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_302 -0.9 -3.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_6022 -0.9 -2.0 StbE replicon stabilization toxin compare
Pf6N2E2_4761 -0.9 -5.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3504 -0.9 -6.0 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_4585 -0.9 -6.4 Cell division protein FtsX compare
Pf6N2E2_2217 -0.9 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3199 -0.9 -3.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_1499 -0.9 -2.2 ABC transporter amino acid-binding protein compare
Pf6N2E2_4638 -0.9 -2.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4059 -0.9 -1.0 DNA-binding protein HU-alpha compare
Pf6N2E2_1987 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_4279 -0.8 -4.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4418 -0.8 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_6140 -0.8 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3282 -0.8 -1.9 FIG005080: Possible exported protein compare
Pf6N2E2_624 -0.8 -3.7 hypothetical protein PA3071 compare
Pf6N2E2_4617 -0.8 -6.7 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_3516 -0.8 -1.9 Probable transmembrane protein compare
Pf6N2E2_4162 -0.8 -2.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_1548 -0.8 -2.1 Lactoylglutathione lyase compare
Pf6N2E2_3617 -0.8 -3.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3373 -0.8 -2.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3277 -0.8 -1.9 FagA protein compare
Pf6N2E2_4766 -0.8 -6.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf6N2E2_5243 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_4759 -0.8 -5.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_285 -0.8 -2.7 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_2835 -0.8 -2.1 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_4612 -0.8 -2.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2261 -0.8 -3.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_338 -0.8 -1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_3586 -0.8 -4.1 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_4708 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_2073 -0.8 -4.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1676 -0.7 -1.4 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_2827 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_2688 -0.7 -1.8 YD repeat protein compare
Pf6N2E2_1248 -0.7 -1.7 MutT/nudix family protein compare
Pf6N2E2_2825 -0.7 -2.4 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_43 -0.7 -3.1 Histidine permease YuiF compare
Pf6N2E2_4353 -0.7 -3.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5956 -0.7 -3.1 FIG004453: protein YceG like compare
Pf6N2E2_3641 -0.7 -2.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_4763 -0.7 -4.7 Biotin synthesis protein BioC compare
Pf6N2E2_3062 -0.7 -2.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_90 -0.7 -2.9 Lipoprotein, putative compare
Pf6N2E2_3603 -0.7 -3.1 FIG003573: hypothetical protein compare
Pf6N2E2_3300 -0.7 -2.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3323 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_2599 -0.7 -3.8 Flagellar biosynthesis protein FliS compare
Pf6N2E2_3537 -0.7 -3.1 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_2366 -0.7 -2.8 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_4545 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_2479 -0.7 -2.2 Transcription elongation factor GreB compare
Pf6N2E2_1718 -0.7 -2.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_672 -0.7 -2.0 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_234 -0.7 -1.8 FIG00454312: hypothetical protein compare
Pf6N2E2_1027 -0.7 -1.3 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_88 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_5545 -0.7 -2.0 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_3072 -0.7 -4.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_2992 -0.7 -2.3 Regulatory protein RecX compare
Pf6N2E2_5064 -0.7 -3.8 Xanthine/uracil/thiamine/ascorbate permease family protein compare
Pf6N2E2_4548 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_5001 -0.7 -1.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_242 -0.7 -3.0 Glycine betaine ABC transport system permease protein compare
Pf6N2E2_1504 -0.7 -1.9 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_3762 -0.7 -3.1 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_734 -0.7 -1.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5394 -0.7 -2.3 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_1782 -0.6 -1.7 STAS domain protein compare
Pf6N2E2_2195 -0.6 -2.1 cI compare
Pf6N2E2_5544 -0.6 -3.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3493 -0.6 -2.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4889 -0.6 -2.8 Putative transport protein compare
Pf6N2E2_2580 -0.6 -2.2 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2274 -0.6 -3.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3270 -0.6 -1.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3432 -0.6 -1.6 Ais protein, putative compare
Pf6N2E2_3778 -0.6 -1.3 FIG00954300: hypothetical protein compare
Pf6N2E2_1596 -0.6 -1.0 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5877 -0.6 -1.6 Phosphohistidine phosphatase SixA compare
Pf6N2E2_5179 -0.6 -4.3 Putative sulfite oxidase subunit YedY compare
Pf6N2E2_660 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_719 -0.6 -1.5 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2106 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_4181 -0.6 -0.8 Organic hydroperoxide resistance protein compare
Pf6N2E2_1444 -0.6 -1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_2071 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_5175 -0.6 -4.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5755 -0.6 -2.4 FIG00956435: hypothetical protein compare
Pf6N2E2_5097 -0.6 -2.7 FIG00953595: hypothetical protein compare
Pf6N2E2_5435 -0.6 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3460 -0.6 -1.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_1584 -0.6 -1.7 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_4614 -0.6 -1.1 twitching motility protein PilH compare
Pf6N2E2_2533 -0.6 -4.1 Rhodanese domain protein UPF0176 compare
Pf6N2E2_2472 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_2148 -0.6 -2.1 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_3820 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_2325 -0.6 -2.5 Recombination protein RecR compare
Pf6N2E2_4278 -0.6 -3.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3725 -0.6 -1.6 FIG085779: Lipoprotein compare
Pf6N2E2_4584 -0.6 -1.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3100 -0.6 -1.8 FIG00953063: hypothetical protein compare
Pf6N2E2_2487 -0.6 -0.7 FIG00956090: hypothetical protein compare
Pf6N2E2_3885 -0.6 -1.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5742 -0.6 -2.4 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_5499 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_6075 -0.6 -1.7 Chromosome segregation ATPases compare
Pf6N2E2_601 -0.6 -1.5 GlpG protein (membrane protein of glp regulon) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sisomicin sulfate salt in Pseudomonas fluorescens FW300-N2E2

For stress Sisomicin sulfate salt across organisms