Experiment set7IT028 for Caulobacter crescentus NA1000

PYE 0.5x 25C survival rep3 28 days

Group: survival
Media: PYE (0.5x)
Culturing: Caulo_ML2, tube, Aerobic, at 25 (C), shaken=200 rpm
By: Sneha on 8-Aug-18
Media components: 1 g/L Bacto Peptone, 0.5 g/L Yeast Extract, 0.4 mM Magnesium sulfate, 0.25 mM Calcium chloride (final concentrations)

Specific Phenotypes

For 17 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Glycine and Serine Utilization	1
Molybdenum cofactor biosynthesis	1
Phosphate metabolism	1
Potassium homeostasis	1
Proline, 4-hydroxyproline uptake and utilization	1
Pyridoxin (Vitamin B6) Biosynthesis	1
Serine Biosynthesis	1
Transport of Molybdenum	1
Xylose utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fatty acid metabolism
• Oxidative phosphorylation
• Purine metabolism
• Glycine, serine and threonine metabolism
• Arginine and proline metabolism
• Glycerophospholipid metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-serine biosynthesis I	3	3	1
L-cysteine biosynthesis IX (Trichomonas vaginalis)	3	2	1
heptadecane biosynthesis	3	1	1
alkane biosynthesis I	3	1	1
superpathway of L-serine and glycine biosynthesis I	4	4	1
allantoin degradation to ureidoglycolate II (ammonia producing)	4	1	1
allantoin degradation to glyoxylate III	5	1	1
allantoin degradation to glyoxylate II	5	1	1
glyphosate degradation III	7	1	1
(aminomethyl)phosphonate degradation	8	1	1
superpathway of allantoin degradation in plants	8	1	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	9	1
allantoin degradation IV (anaerobic)	9	3	1
mycobactin biosynthesis	11	2	1