Experiment set7IT027 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sisomicin sulfate salt 0.0008 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -5.0 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3611 -3.6 -2.4 HflC protein compare
Pf6N2E2_288 -3.5 -4.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3612 -3.5 -4.1 HflK protein compare
Pf6N2E2_3261 -3.3 -5.8 hypothetical protein compare
Pf6N2E2_4072 -3.1 -5.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5340 -3.0 -5.3 Stringent starvation protein A compare
Pf6N2E2_4187 -3.0 -5.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2277 -2.7 -4.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3656 -2.6 -6.7 Probable transcription regulator Mig-14 compare
Pf6N2E2_4599 -2.4 -4.5 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5178 -2.3 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4743 -2.2 -1.8 hypothetical protein compare
Pf6N2E2_3655 -2.1 -12.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3826 -2.1 -6.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3264 -2.1 -2.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4352 -2.0 -4.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4369 -2.0 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4272 -1.9 -4.6 putative membrane protein compare
Pf6N2E2_3300 -1.7 -3.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2518 -1.7 -3.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4416 -1.7 -3.3 Tyrosine recombinase XerC compare
Pf6N2E2_5728 -1.7 -4.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2264 -1.6 -4.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3134 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_4797 -1.6 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_469 -1.6 -2.9 lipoprotein, putative compare
Pf6N2E2_987 -1.6 -2.7 hypothetical protein compare
Pf6N2E2_3908 -1.5 -6.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4638 -1.5 -3.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5430 -1.5 -8.0 Transglycosylase, Slt family compare
Pf6N2E2_5605 -1.5 -3.2 FxsA protein compare
Pf6N2E2_5520 -1.4 -5.5 Sensory box histidine kinase compare
Pf6N2E2_2605 -1.4 -5.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2706 -1.4 -3.5 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5150 -1.4 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5252 -1.4 -2.5 FIG00956396: hypothetical protein compare
Pf6N2E2_4418 -1.4 -1.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1834 -1.3 -2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1673 -1.3 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_75 -1.2 -3.4 Colicin V production protein compare
Pf6N2E2_4059 -1.2 -1.3 DNA-binding protein HU-alpha compare
Pf6N2E2_4454 -1.2 -4.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5242 -1.2 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2218 -1.2 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3763 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_3282 -1.2 -2.3 FIG005080: Possible exported protein compare
Pf6N2E2_2646 -1.2 -1.8 FIG00953416: hypothetical protein compare
Pf6N2E2_3199 -1.2 -4.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_2217 -1.2 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2106 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_2074 -1.1 -1.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5536 -1.1 -1.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4273 -1.1 -4.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5766 -1.1 -1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3460 -1.1 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5733 -1.1 -4.2 NLP/P60 family protein compare
Pf6N2E2_3461 -1.1 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5555 -1.1 -0.9 Cold shock protein CspA compare
Pf6N2E2_6140 -1.1 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5494 -1.1 -3.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5190 -1.1 -5.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4773 -1.1 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1617 -1.1 -1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_1396 -1.1 -1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_2940 -1.0 -4.5 OmpA family protein compare
Pf6N2E2_2912 -1.0 -1.3 FIG00954094: hypothetical protein compare
Pf6N2E2_5646 -1.0 -1.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1239 -1.0 -5.4 Putative TEGT family carrier/transport protein conserved
Pf6N2E2_3260 -1.0 -3.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3792 -1.0 -4.0 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5001 -1.0 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_624 -1.0 -3.4 hypothetical protein PA3071 compare
Pf6N2E2_586 -1.0 -5.2 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_1504 -1.0 -2.1 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_4353 -1.0 -3.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3258 -1.0 -3.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5794 -0.9 -1.1 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2578 -0.9 -2.7 Flagellar biosynthesis protein FliR compare
Pf6N2E2_4614 -0.9 -2.5 twitching motility protein PilH compare
Pf6N2E2_2967 -0.9 -1.6 Cold shock protein CspA compare
Pf6N2E2_620 -0.9 -4.3 BatD compare
Pf6N2E2_5006 -0.9 -3.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3062 -0.9 -3.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2825 -0.9 -3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4762 -0.9 -2.4 Biotin synthesis protein BioH compare
Pf6N2E2_4537 -0.9 -1.6 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_1056 -0.9 -3.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_417 -0.9 -2.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2284 -0.9 -1.9 Cell division inhibitor-related protein compare
Pf6N2E2_2707 -0.9 -2.3 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2708 -0.9 -3.5 Lactam utilization protein LamB compare
Pf6N2E2_445 -0.9 -3.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_625 -0.9 -3.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2371 -0.9 -2.3 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_601 -0.9 -2.7 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_5841 -0.9 -1.2 GlcG protein compare
Pf6N2E2_4300 -0.8 -2.9 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_2753 -0.8 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_3406 -0.8 -3.1 putative ABC transporter ATP-binding protein compare
Pf6N2E2_178 -0.8 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2261 -0.8 -3.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_553 -0.8 -2.9 Uncharacterized protein ImpD compare
Pf6N2E2_2274 -0.8 -3.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2246 -0.8 -3.4 Arabinose efflux permease compare
Pf6N2E2_90 -0.8 -3.5 Lipoprotein, putative compare
Pf6N2E2_3702 -0.8 -2.3 FIG00953907: hypothetical protein compare
Pf6N2E2_3841 -0.8 -3.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_600 -0.8 -2.2 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_1082 -0.8 -2.0 CopG protein compare
Pf6N2E2_2606 -0.8 -3.7 hypothetical protein compare
Pf6N2E2_5392 -0.8 -2.8 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_5522 -0.8 -2.8 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_1027 -0.8 -1.9 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_344 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_3825 -0.8 -2.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3607 -0.8 -3.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5757 -0.8 -2.5 hypothetical protein compare
Pf6N2E2_5740 -0.8 -3.5 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_4279 -0.8 -5.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2132 -0.8 -3.1 FIG00956937: hypothetical protein compare
Pf6N2E2_1797 -0.8 -1.5 Transcriptional regulator compare
Pf6N2E2_5705 -0.8 -1.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1625 -0.8 -2.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_1315 -0.8 -1.4 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_3791 -0.7 -4.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3603 -0.7 -3.7 FIG003573: hypothetical protein compare
Pf6N2E2_2992 -0.7 -2.9 Regulatory protein RecX compare
Pf6N2E2_1074 -0.7 -1.3 FIG00953356: hypothetical protein compare
Pf6N2E2_4120 -0.7 -5.1 Trk system potassium uptake protein TrkA compare
Pf6N2E2_156 -0.7 -1.1 Carbon storage regulator compare
Pf6N2E2_2064 -0.7 -1.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_2503 -0.7 -1.4 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2693 -0.7 -1.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4617 -0.7 -5.6 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_5816 -0.7 -1.5 Smr domain protein compare
Pf6N2E2_1694 -0.7 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2835 -0.7 -1.9 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_3004 -0.7 -2.0 Prophage baseplate assembly protein V compare
Pf6N2E2_828 -0.7 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2823 -0.7 -2.2 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_1441 -0.7 -1.1 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5714 -0.7 -1.8 Flavoprotein WrbA compare
Pf6N2E2_622 -0.7 -1.7 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2285 -0.7 -1.2 FIG00954079: hypothetical protein compare
Pf6N2E2_5546 -0.7 -3.0 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_4918 -0.7 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_302 -0.7 -2.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4414 -0.7 -1.0 FIG00953808: hypothetical protein compare
Pf6N2E2_4155 -0.7 -4.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_405 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_4278 -0.7 -4.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5024 -0.6 -2.0 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_1043 -0.6 -1.4 Transcriptional regulator, IclR family compare
Pf6N2E2_2059 -0.6 -1.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3586 -0.6 -2.8 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_4381 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_2351 -0.6 -2.8 Oxygen-regulated invasion protein OrgA compare
Pf6N2E2_3015 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_4305 -0.6 -0.9 FIG00959590: hypothetical protein compare
Pf6N2E2_621 -0.6 -3.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4889 -0.6 -2.6 Putative transport protein compare
Pf6N2E2_4579 -0.6 -1.5 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2962 -0.6 -2.1 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4759 -0.6 -4.3 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5243 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_4372 -0.6 -2.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3725 -0.6 -1.5 FIG085779: Lipoprotein compare
Pf6N2E2_6090 -0.6 -1.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_4277 -0.6 -4.5 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4551 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_4077 -0.6 -1.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3257 -0.6 -1.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1735 -0.6 -0.9 PhnB protein compare
Pf6N2E2_3515 -0.6 -3.4 Probable transmembrane protein compare
Pf6N2E2_1747 -0.6 -1.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2905 -0.6 -2.1 CoA transferase, CAIB/BAIF family compare
Pf6N2E2_5175 -0.6 -4.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2634 -0.6 -3.4 Potassium uptake protein TrkH compare
Pf6N2E2_5991 -0.6 -1.8 proteinase inhibitor compare
Pf6N2E2_1598 -0.6 -1.7 Nitrate reductase cytochrome c550-type subunit compare
Pf6N2E2_870 -0.6 -2.1 DNA-binding response regulator compare
Pf6N2E2_3270 -0.6 -2.2 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3546 -0.6 -2.0 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_5593 -0.6 -2.0 Leucyl-tRNA synthetase compare
Pf6N2E2_48 -0.6 -1.9 FIG00955661: hypothetical protein compare
Pf6N2E2_1886 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_1545 -0.6 -2.3 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1156 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_1460 -0.6 -2.0 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_5500 -0.6 -1.8 MoxR-like ATPases compare
Pf6N2E2_4585 -0.6 -4.1 Cell division protein FtsX compare
Pf6N2E2_4763 -0.6 -3.1 Biotin synthesis protein BioC compare
Pf6N2E2_2228 -0.6 -3.0 Transcriptional regulator, LysR family compare
Pf6N2E2_4587 -0.6 -2.9 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
Pf6N2E2_763 -0.6 -2.3 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_2196 -0.6 -2.4 FIG00953347: hypothetical protein compare
Pf6N2E2_1860 -0.6 -1.8 Ferredoxin, 2Fe-2S compare
Pf6N2E2_3947 -0.6 -0.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_6063 -0.6 -2.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sisomicin sulfate salt across organisms