Experiment set7IT027 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Pepper

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.9 -3.4 anthranilate synthase, component II compare
Psyr_1350 -4.7 -3.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4580 -4.5 -5.3 anthranilate phosphoribosyltransferase compare
Psyr_4609 -4.5 -15.6 anthranilate synthase, component I compare
Psyr_1983 -4.3 -6.9 3-isopropylmalate dehydratase, large subunit compare
Psyr_1269 -4.3 -3.0 phosphoribosylformylglycinamidine synthase compare
Psyr_4270 -4.1 -9.9 serine hydroxymethyltransferase compare
Psyr_2980 -4.1 -4.8 UDP-glucose pyrophosphorylase compare
Psyr_1984 -4.1 -4.1 3-isopropylmalate dehydratase, small subunit compare
Psyr_1613 -4.0 -6.6 septum site-determining protein MinC compare
Psyr_0846 -4.0 -13.6 acetolactate synthase, large subunit compare
Psyr_4407 -3.9 -2.7 phosphoribosylamine--glycine ligase compare
Psyr_1217 -3.8 -5.1 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_1212 -3.7 -3.7 type III secretion protein HrpO compare
Psyr_1668 -3.7 -6.5 amidophosphoribosyltransferase compare
Psyr_1190 -3.6 -5.4 type III transcriptional regulator HrpR compare
Psyr_1985 -3.6 -10.3 3-isopropylmalate dehydrogenase compare
Psyr_0034 -3.6 -2.5 tryptophan synthase, beta chain compare
Psyr_0847 -3.6 -8.8 acetolactate synthase, small subunit compare
Psyr_3958 -3.5 -12.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_4133 -3.5 -15.8 histidinol dehydrogenase compare
Psyr_4897 -3.5 -5.0 imidazoleglycerol-phosphate dehydratase compare
Psyr_3008 -3.3 -7.6 Undecaprenyl-diphosphatase compare
Psyr_0033 -3.3 -4.5 tryptophan synthase, alpha chain compare
Psyr_1669 -3.3 -11.2 O-succinylhomoserine sulfhydrylase compare
Psyr_4132 -3.2 -12.3 histidinol phosphate aminotransferase apoenzyme compare
Psyr_1663 -3.2 -4.7 phosphoribosylanthranilate isomerase compare
Psyr_0529 -3.2 -6.9 Glycosyl transferase, group 1 compare
Psyr_0469 -3.1 -12.3 dihydroxyacid dehydratase compare
Psyr_4896 -3.0 -7.9 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0474 -3.0 -9.8 homoserine O-acetyltransferase compare
Psyr_1410 -2.9 -6.1 Holliday junction DNA helicase RuvB compare
Psyr_4134 -2.9 -10.1 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0917 -2.9 -9.7 ABC-2 compare
Psyr_1197 -2.8 -6.7 type III secretion protein HrpE compare
Psyr_1198 -2.7 -3.4 type III secretion protein HrpF compare
Psyr_1208 -2.7 -15.1 type III secretion protein HrcR compare
Psyr_2613 -2.6 -9.0 Cyclic peptide transporter compare
Psyr_1748 -2.6 -7.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0385 -2.6 -4.7 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0219 -2.5 -11.6 phosphomannomutase compare
Psyr_0704 -2.5 -7.8 glutamate 5-kinase compare
Psyr_1210 -2.5 -4.8 type III secretion protein HrcQa compare
Psyr_0918 -2.5 -12.7 ABC transporter compare
Psyr_4566 -2.5 -10.5 Peptidase M23B compare
Psyr_4894 -2.5 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0531 -2.5 -2.7 LmbE-like protein compare
Psyr_1191 -2.4 -9.9 type III transcriptional regulator HrpS compare
Psyr_1195 -2.4 -9.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
Psyr_3179 -2.4 -4.1 DNA translocase FtsK compare
Psyr_5135 -2.4 -2.4 Protein of unknown function DUF37 compare
Psyr_1200 -2.4 -11.7 outer-membrane type III secretion protein HrcC compare
Psyr_1216 -2.4 -8.6 type III secretion outer membrane protein PopN compare
Psyr_1213 -2.4 -9.8 type III secretion cytoplasmic ATPase HrcN compare
Psyr_4852 -2.3 -6.7 D-3-phosphoglycerate dehydrogenase compare
Psyr_0848 -2.3 -7.2 ketol-acid reductoisomerase compare
Psyr_4893 -2.3 -2.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1373 -2.3 -3.3 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4687 -2.3 -9.0 biotin synthase compare
Psyr_2617 -2.2 -2.8 Secretion protein HlyD compare
Psyr_1215 -2.2 -8.9 Type III secretion protein HrcV compare
Psyr_4460 -2.2 -3.0 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_4130 -2.2 -9.9 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_0473 -2.1 -6.3 Methionine biosynthesis MetW compare
Psyr_1408 -2.1 -3.3 Holliday junction endonuclease RuvC compare
Psyr_1596 -2.0 -3.0 Helix-turn-helix motif protein compare
Psyr_1205 -2.0 -7.8 type III secretion protein HrcU compare
Psyr_0557 -2.0 -5.3 phosphoserine phosphatase compare
Psyr_1196 -2.0 -3.1 type III secretion protein HrpD compare
Psyr_0386 -2.0 -2.7 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0576 -2.0 -2.3 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1544 -2.0 -4.1 SirA-like protein compare
Psyr_4341 -1.9 -6.9 thiamine-phosphate diphosphorylase compare
Psyr_3193 -1.9 -3.8 Transcription factor jumonji, jmjC compare
Psyr_0915 -1.8 -8.6 NAD-dependent epimerase/dehydratase compare
Psyr_0454 -1.8 -5.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1056 -1.8 -4.4 Poly(beta-D-mannuronate) lyase compare
Psyr_1257 -1.8 -6.3 2-isopropylmalate synthase compare
Psyr_2312 -1.8 -1.4 Protein of unknown function DUF24 compare
Psyr_3013 -1.7 -2.6 magnesium chelatase subunit ChlD compare
Psyr_0920 -1.7 -13.1 Glycosyl transferase, group 1 compare
Psyr_4091 -1.7 -4.5 8-oxo-dGTPase compare
Psyr_5072 -1.7 -1.2 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4087 -1.7 -1.4 Protein of unknown function DUF520 compare
Psyr_3202 -1.7 -2.5 NADH dehydrogenase subunit G compare
Psyr_0532 -1.7 -5.3 conserved hypothetical protein compare
Psyr_4844 -1.7 -7.4 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_1670 -1.7 -2.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_4740 -1.7 -4.8 thiazole-phosphate synthase compare
Psyr_4136 -1.6 -1.7 BolA-like protein compare
Psyr_3554 -1.6 -1.4 Carbon storage regulator compare
Psyr_4582 -1.6 -1.2 hypothetical protein compare
Psyr_0951 -1.6 -3.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4369 -1.5 -5.3 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4991 -1.5 -2.3 hypothetical protein compare
Psyr_1211 -1.5 -3.9 type III secretion protein HrpP compare
Psyr_4155 -1.5 -1.4 Protein of unknown function DUF615 compare
Psyr_3906 -1.5 -2.1 regulatory protein, DeoR compare
Psyr_0167 -1.5 -2.7 hypothetical protein compare
Psyr_1206 -1.5 -3.9 type III secretion protein HrcT compare
Psyr_4684 -1.5 -3.0 biotin synthesis protein BioC compare
Psyr_2275 -1.4 -3.9 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_5065 -1.4 -6.2 ATP-dependent DNA helicase UvrD compare
Psyr_1218 -1.4 -7.2 type III helper protein HrpK1 compare
Psyr_3637 -1.4 -9.1 Glycosyl transferase, family 4 compare
Psyr_4340 -1.4 -5.6 phosphomethylpyrimidine kinase, putative compare
Psyr_5102 -1.4 -2.6 ABC transporter compare
Psyr_2820 -1.4 -2.5 RecT protein compare
Psyr_3552 -1.4 -2.4 Divalent cation transporter compare
Psyr_0377 -1.3 -4.6 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4634 -1.3 -1.2 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3701 -1.3 -2.1 thioredoxin, putative compare
Psyr_RNA28 -1.3 -1.6 tRNA-Val compare
Psyr_3841 -1.3 -2.0 conserved hypothetical protein compare
Psyr_0574 -1.3 -4.2 protease FtsH subunit HflK compare
Psyr_0914 -1.3 -6.5 Glycosyl transferase, group 1 compare
Psyr_3882 -1.3 -1.7 conserved hypothetical protein compare
Psyr_4995 -1.3 -2.7 RHS protein compare
Psyr_0014 -1.3 -3.2 lipid A biosynthesis acyltransferase compare
Psyr_4512 -1.3 -5.2 putative phage-related protein compare
Psyr_0199 -1.3 -2.6 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_1717 -1.3 -1.2 TPR repeat:von Willebrand factor, type A compare
Psyr_1418 -1.3 -2.7 Radical SAM compare
Psyr_3459 -1.3 -2.4 Helix-turn-helix, Fis-type compare
Psyr_3934 -1.3 -1.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_0137 -1.3 -1.1 outer membrane transport energization protein ExbD compare
Psyr_2251 -1.3 -2.3 Phosphonate metabolism PhnG compare
Psyr_2612 -1.2 -2.6 syrP protein, putative compare
Psyr_2807 -1.2 -1.6 NinB compare
Psyr_0393 -1.2 -3.3 Protein of unknown function DUF971 compare
Psyr_1140 -1.2 -3.3 Disulfide bond formation protein DsbB compare
Psyr_4408 -1.2 -5.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4151 -1.2 -1.2 Phosphocarrier HPr protein compare
Psyr_4404 -1.2 -1.5 tRNA-U20-dihydrouridine synthase compare
Psyr_0919 -1.2 -7.0 Chromosome segregation ATPase-like protein compare
Psyr_0550 -1.2 -3.9 Protein of unknown function UPF0227 compare
Psyr_3638 -1.2 -3.5 UDP-glucose 4-epimerase, putative compare
Psyr_4830 -1.2 -1.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3698 -1.1 -3.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_0769 -1.1 -2.6 conserved hypothetical membrane-anchored protein compare
Psyr_0936 -1.1 -6.5 Glycosyl transferase, group 1 compare
Psyr_1747 -1.1 -3.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2227 -1.1 -1.9 conserved hypothetical protein compare
Psyr_3018 -1.1 -3.1 membrane protein, putative compare
Psyr_4224 -1.1 -1.4 conserved hypothetical protein compare
Psyr_3947 -1.1 -1.5 Methyltransferase, putative compare
Psyr_4686 -1.1 -3.7 8-amino-7-oxononanoate synthase compare
Psyr_1907 -1.1 -2.0 GTP cyclohydrolase I compare
Psyr_0378 -1.1 -4.9 Glycosyl transferase, family 2 compare
Psyr_0025 -1.0 -2.1 shikimate dehydrogenase compare
Psyr_4463 -1.0 -2.5 Protein of unknown function DUF193 compare
Psyr_2781 -1.0 -3.3 hypothetical protein compare
Psyr_3886 -1.0 -1.1 methionyl-tRNA synthetase compare
Psyr_3484 -1.0 -3.0 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_5132 -1.0 -2.0 Glucose-inhibited division protein A subfamily compare
Psyr_4140 -1.0 -2.3 Protein of unknown function DUF140 compare
Psyr_4887 -1.0 -5.4 Peptidase S41A, C-terminal protease compare
Psyr_0444 -1.0 -0.9 Malonate decarboxylase delta subunit compare
Psyr_4361 -1.0 -2.8 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3850 -1.0 -2.2 lipoprotein, putative compare
Psyr_3287 -1.0 -1.6 DNA topoisomerase I compare
Psyr_4262 -1.0 -1.2 lipoprotein, putative compare
Psyr_1588 -1.0 -2.4 Putative exonuclease, RdgC compare
Psyr_1250 -1.0 -2.7 conserved hypothetical protein compare
Psyr_3636 -1.0 -6.3 Polysaccharide biosynthesis protein CapD compare
Psyr_1667 -1.0 -2.6 Colicin V production protein compare
Psyr_2115 -1.0 -2.0 Response regulator receiver compare
Psyr_3933 -1.0 -1.9 conserved hypothetical protein compare
Psyr_4727 -1.0 -2.3 glutathione S-transferase, putative compare
Psyr_4100 -1.0 -3.5 D-alanine--D-alanine ligase compare
Psyr_0447 -1.0 -2.5 malonate decarboxylase subunit, putative compare
Psyr_0046 -1.0 -2.5 conserved hypothetical protein compare
Psyr_1884 -0.9 -4.8 CDS compare
Psyr_0822 -0.9 -1.3 1-phosphofructokinase compare
Psyr_5036 -0.9 -2.2 Response regulator receiver compare
Psyr_4940 -0.9 -1.4 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_2196 -0.9 -2.3 Urease accessory protein UreG compare
Psyr_2347 -0.9 -2.9 hypothetical protein compare
Psyr_1268 -0.9 -3.4 extracellular solute-binding protein, family 3:SLT compare
Psyr_1372 -0.9 -2.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3299 -0.9 -2.3 two component transcriptional regulator, LuxR family compare
Psyr_3677 -0.9 -2.0 Aminotransferase, class I and II compare
Psyr_2270 -0.9 -1.6 transferase hexapeptide repeat protein compare
Psyr_3004 -0.9 -2.2 transcriptional regulator, LysR family compare
Psyr_3020 -0.9 -1.1 precorrin-4 C11-methyltransferase compare
Psyr_0534 -0.9 -6.5 membrane protein, putative compare
Psyr_0044 -0.9 -1.2 transferase hexapeptide repeat protein compare
Psyr_2557 -0.9 -1.8 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_4203 -0.9 -1.5 SsrA-binding protein compare
Psyr_4018 -0.9 -3.9 Formyltetrahydrofolate deformylase compare
Psyr_3808 -0.9 -0.8 hypothetical protein compare
Psyr_2619 -0.9 -2.0 diaminobutyrate aminotransferase apoenzyme compare
Psyr_0528 -0.9 -1.8 Carbamoyltransferase compare
Psyr_2897 -0.9 -3.6 regulatory protein, LuxR:Response regulator receiver compare
Psyr_1615 -0.9 -3.0 Patatin compare
Psyr_4362 -0.9 -1.8 Rare lipoprotein A compare
Psyr_4688 -0.9 -2.1 Phosphoribosyltransferase compare
Psyr_2242 -0.9 -2.1 conserved hypothetical protein compare
Psyr_1694 -0.9 -1.9 Rhomboid-like protein compare
Psyr_3429 -0.9 -1.8 CheW-like protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments