Experiment set7IT027 for Methanococcus maripaludis S2

Compare to:

Iron limitation, formate media

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -3.6 -9.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06355 -3.5 -7.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03015 -3.4 -15.3 GTP 3' 8-cyclase MoaA compare
MMP_RS01500 -3.4 -5.5 CBS domain-containing protein compare
MMP_RS06685 -3.4 -17.5 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00300 -3.4 -1.5 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06700 -3.4 -18.8 hypothetical protein compare
MMP_RS06350 -3.3 -14.9 HesA/MoeB/ThiF family protein compare
MMP_RS06680 -3.3 -19.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05515 -3.2 -12.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06345 -3.1 -18.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03315 -2.9 -2.3 ferrous iron transport protein A compare
MMP_RS04900 -2.9 -23.4 hypothetical protein compare
MMP_RS08820 -2.9 -8.3 hypothetical protein compare
MMP_RS02010 -2.7 -14.2 PHP domain-containing protein compare
MMP_RS07635 -2.7 -9.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06285 -2.7 -4.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00040 -2.6 -5.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01005 -2.6 -3.4 riboflavin synthase compare
MMP_RS08635 -2.6 -3.5 UbiA family prenyltransferase compare
MMP_RS08720 -2.5 -4.3 4Fe-4S binding protein compare
MMP_RS02195 -2.5 -7.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03475 -2.5 -1.6 hypothetical protein compare
MMP_RS08745 -2.4 -7.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01545 -2.4 -2.3 CBS domain-containing protein compare
MMP_RS00895 -2.3 -5.5 hypothetical protein compare
MMP_RS01020 -2.3 -2.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06895 -2.3 -3.4 selenocysteine-specific translation elongation factor compare
MMP_RS07445 -2.3 -9.4 helix-turn-helix domain-containing protein compare
MMP_RS07525 -2.3 -10.1 4Fe-4S binding protein compare
MMP_RS04585 -2.3 -12.1 AIR synthase related protein compare
MMP_RS08460 -2.3 -4.2 proteasome-activating nucleotidase compare
MMP_RS00515 -2.2 -1.8 DUF655 domain-containing protein compare
MMP_RS06715 -2.2 -15.9 cache domain-containing protein compare
MMP_RS08210 -2.2 -4.6 phosphatidylglycerophosphatase A compare
MMP_RS01610 -2.2 -6.3 hypothetical protein compare
MMP_RS04710 -2.2 -3.6 hypothetical protein compare
MMP_RS00115 -2.1 -12.6 radical SAM protein compare
MMP_RS04775 -2.1 -5.1 adenosylhomocysteinase compare
MMP_RS06105 -2.1 -12.1 hydrogenase maturation peptidase HycI compare
MMP_RS06295 -2.1 -8.7 methanogenesis marker 14 protein compare
MMP_RS02240 -2.1 -5.5 methanogenesis marker 7 protein compare
MMP_RS06720 -2.1 -10.4 response regulator transcription factor compare
MMP_RS01265 -2.0 -2.8 hypothetical protein compare
MMP_RS06885 -2.0 -3.8 50S ribosome-binding GTPase compare
MMP_RS06730 -1.9 -3.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS04890 -1.9 -1.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS04685 -1.9 -4.5 DUF126 domain-containing protein compare
MMP_RS06705 -1.9 -7.8 formate/nitrite transporter family protein compare
MMP_RS08715 -1.9 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04780 -1.9 -4.6 ribonuclease P compare
MMP_RS01755 -1.9 -2.4 DUF2097 domain-containing protein compare
MMP_RS04605 -1.8 -4.6 cobalt ECF transporter T component CbiQ compare
MMP_RS03640 -1.8 -6.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03600 -1.8 -3.3 triose-phosphate isomerase compare
MMP_RS01985 -1.7 -5.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08435 -1.7 -4.6 Era-like GTP-binding protein compare
MMP_RS01380 -1.7 -6.3 PHP domain-containing protein compare
MMP_RS01220 -1.7 -9.7 hypothetical protein compare
MMP_RS05245 -1.7 -10.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS03025 -1.6 -7.1 molybdenum cofactor guanylyltransferase compare
MMP_RS01980 -1.6 -11.6 trimeric intracellular cation channel family protein compare
MMP_RS07755 -1.6 -2.4 DUF555 domain-containing protein compare
MMP_RS06625 -1.6 -3.4 DNA primase compare
MMP_RS02280 -1.6 -1.6 DUF211 domain-containing protein compare
MMP_RS02235 -1.6 -9.6 CBS domain-containing protein compare
MMP_RS02355 -1.6 -3.8 30S ribosomal protein S27ae compare
MMP_RS07630 -1.6 -2.6 ATP-binding cassette domain-containing protein compare
MMP_RS07365 -1.6 -10.5 2-phosphoglycerate kinase compare
MMP_RS00685 -1.6 -6.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07600 -1.5 -2.7 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02800 -1.5 -5.6 nucleotidyltransferase domain-containing protein compare
MMP_RS01365 -1.5 -3.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08300 -1.5 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS00305 -1.5 -2.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS01250 -1.5 -5.4 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS08645 -1.5 -8.3 UPF0179 family protein compare
MMP_RS05540 -1.5 -3.0 hypothetical protein compare
MMP_RS00620 -1.5 -8.0 4Fe-4S binding protein compare
MMP_RS04870 -1.4 -7.4 TIGR02253 family HAD-type hydrolase compare
MMP_RS07575 -1.4 -4.1 RNA ligase partner protein compare
MMP_RS03400 -1.4 -2.9 archease compare
MMP_RS01795 -1.4 -2.9 methanogenesis marker 6 protein compare
MMP_RS01385 -1.4 -1.1 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03205 -1.4 -2.2 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08790 -1.3 -3.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS05430 -1.3 -4.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS03580 -1.3 -3.6 signal recognition particle-docking protein FtsY compare
MMP_RS05510 -1.3 -6.7 Rrf2 family transcriptional regulator compare
MMP_RS07005 -1.3 -1.0 4Fe-4S binding protein compare
MMP_RS04500 -1.3 -9.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS07380 -1.3 -2.8 transcription elongation factor Spt5 compare
MMP_RS02145 -1.3 -7.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS06400 -1.2 -1.7 4Fe-4S binding protein compare
MMP_RS07765 -1.2 -7.6 sodium:alanine symporter family protein compare
MMP_RS08105 -1.2 -6.5 6-carboxyhexanoate--CoA ligase compare
MMP_RS07685 -1.2 -6.3 TIGR01212 family radical SAM protein compare
MMP_RS07200 -1.2 -4.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05845 -1.2 -2.4 tRNA-intron lyase compare
MMP_RS00110 -1.1 -4.3 hypothetical protein compare
MMP_RS02340 -1.1 -2.2 DNA-directed RNA polymerase subunit E'' compare
MMP_RS02190 -1.1 -3.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS06175 -1.1 -7.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS08650 -1.1 -3.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS02175 -1.1 -1.2 DUF1611 domain-containing protein compare
MMP_RS08100 -1.1 -7.6 8-amino-7-oxononanoate synthase compare
MMP_RS05765 -1.1 -5.7 M42 family metallopeptidase compare
MMP_RS02345 -1.1 -2.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS02165 -1.1 -4.7 tRNA-dihydrouridine synthase compare
MMP_RS03035 -1.1 -3.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07545 -1.1 -1.4 HTH domain-containing protein compare
MMP_RS01225 -1.1 -5.0 DUF5379 domain-containing protein compare
MMP_RS08095 -1.1 -5.3 dethiobiotin synthase compare
MMP_RS06270 -1.1 -3.8 TIGR00300 family protein compare
MMP_RS08200 -1.0 -8.7 archaeosine synthase subunit alpha compare
MMP_RS06475 -1.0 -3.0 FAD-dependent oxidoreductase compare
MMP_RS00915 -1.0 -4.4 DUF116 domain-containing protein compare
MMP_RS01890 -1.0 -4.7 nucleotide sugar dehydrogenase compare
MMP_RS03550 -1.0 -2.0 DUF2124 domain-containing protein compare
MMP_RS06840 -1.0 -1.3 DNA-directed RNA polymerase subunit N compare
MMP_RS01720 -1.0 -1.4 replication factor C large subunit compare
MMP_RS01725 -1.0 -3.7 class I SAM-dependent methyltransferase family protein compare
MMP_RS05920 -1.0 -0.5 50S ribosomal protein L37e compare
MMP_RS06975 -1.0 -2.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05875 -1.0 -5.2 hydroxyethylthiazole kinase compare
MMP_RS03080 -1.0 -2.8 universal stress protein compare
MMP_RS03590 -1.0 -6.1 METTL5 family protein compare
MMP_RS00060 -1.0 -2.4 3-dehydroquinate synthase II compare
MMP_RS03110 -1.0 -4.5 glycosyltransferase family 2 protein compare
MMP_RS09020 -1.0 -1.6 hypothetical protein compare
MMP_RS06370 -0.9 -4.3 biotin synthase BioB compare
MMP_RS03960 -0.9 -1.2 hypothetical protein compare
MMP_RS06230 -0.9 -2.5 helix-turn-helix domain-containing protein compare
MMP_RS00695 -0.9 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03095 -0.9 -5.1 diphthine synthase compare
MMP_RS07605 -0.9 -3.6 diadenylate cyclase compare
MMP_RS04620 -0.9 -4.6 cobalt transporter CbiM compare
MMP_RS06200 -0.9 -5.7 M24 family metallopeptidase compare
MMP_RS00130 -0.9 -1.5 nickel-responsive transcriptional regulator NikR compare
MMP_RS01800 -0.9 -2.9 TIGR00303 family protein compare
MMP_RS06120 -0.9 -2.3 UPF0147 family protein compare
MMP_RS07645 -0.9 -3.3 aldehyde dehydrogenase family protein compare
MMP_RS02135 -0.9 -3.1 DUF5612 domain-containing protein compare
MMP_RS00555 -0.9 -4.8 MFS transporter compare
MMP_RS01840 -0.8 -4.5 TIGR00289 family protein compare
MMP_RS03700 -0.8 -4.8 sodium:proton antiporter compare
MMP_RS07845 -0.8 -1.9 LL-diaminopimelate aminotransferase compare
MMP_RS06925 -0.8 -2.3 ribonuclease VapC4 compare
MMP_RS07390 -0.8 -2.1 cell division protein FtsZ compare
MMP_RS00810 -0.8 -4.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07710 -0.8 -4.4 cell division protein FtsZ compare
MMP_RS08320 -0.8 -5.3 molybdopterin molybdotransferase MoeA compare
MMP_RS03485 -0.8 -4.1 TIGR00267 family protein compare
MMP_RS05555 -0.8 -1.1 DUF4040 domain-containing protein compare
MMP_RS06020 -0.8 -3.4 archaeoflavoprotein AfpA compare
MMP_RS06930 -0.8 -5.3 MBL fold metallo-hydrolase compare
MMP_RS07735 -0.8 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07535 -0.8 -3.7 4Fe-4S binding protein compare
MMP_RS02245 -0.8 -3.2 hypothetical protein compare
MMP_RS07860 -0.8 -1.0 hypothetical protein compare
MMP_RS06855 -0.8 -4.7 hypothetical protein compare
MMP_RS06670 -0.8 -4.0 glucose-6-phosphate isomerase compare
MMP_RS07385 -0.7 -1.5 protein translocase SEC61 complex subunit gamma compare
MMP_RS00520 -0.7 -1.5 RNA polymerase Rpb4 family protein compare
MMP_RS04955 -0.7 -3.0 DNA topoisomerase I compare
MMP_RS03435 -0.7 -1.1 ketol-acid reductoisomerase compare
MMP_RS05815 -0.7 -1.5 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00985 -0.7 -3.2 CDC48 family AAA ATPase compare
MMP_RS00675 -0.7 -1.1 nitroreductase family protein compare
MMP_RS08690 -0.7 -5.2 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS03020 -0.7 -3.7 peptidylprolyl isomerase compare
MMP_RS08725 -0.7 -1.2 Ni/Fe hydrogenase subunit alpha compare
MMP_RS05285 -0.7 -3.5 MMPL family transporter compare
MMP_RS03440 -0.7 -1.2 MoaD/ThiS family protein compare
MMP_RS06940 -0.7 -2.3 polyprenyl diphosphate synthase compare
MMP_RS04695 -0.7 -5.0 selenide water dikinase SelD compare
MMP_RS01045 -0.7 -3.6 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS01780 -0.6 -3.8 TrmJ/YjtD family RNA methyltransferase compare
MMP_RS07090 -0.6 -3.7 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06915 -0.6 -2.8 metallophosphoesterase compare
MMP_RS05345 -0.6 -3.0 hypothetical protein compare
MMP_RS07435 -0.6 -1.5 GMP synthase subunit A compare
MMP_RS02900 -0.6 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08615 -0.6 -2.0 flagellar protein G compare
MMP_RS08165 -0.6 -1.1 phosphoglycerate dehydrogenase compare
MMP_RS05545 -0.6 -3.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00050 -0.6 -3.4 AarF/UbiB family protein compare
MMP_RS01575 -0.6 -3.5 aldolase compare
MMP_RS01900 -0.6 -4.9 hypothetical protein compare
MMP_RS05640 -0.6 -3.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS03685 -0.6 -3.8 Mrp/NBP35 family ATP-binding protein compare
MMP_RS07790 -0.6 -3.2 segregation/condensation protein A compare
MMP_RS01915 -0.6 -4.6 DUF354 domain-containing protein compare
MMP_RS05440 -0.6 -4.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS06315 -0.6 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08940 -0.6 -1.1 MetS family NSS transporter small subunit compare
MMP_RS01600 -0.6 -1.8 50S ribosomal protein L15e compare
MMP_RS06865 -0.6 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06980 -0.6 -3.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07775 -0.5 -3.5 alanine dehydrogenase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms