Experiment set7IT027 for Caulobacter crescentus NA1000
PYE 0.5x 25C survival rep2 28 days
Group: survivalMedia: PYE (0.5x)
Culturing: Caulo_ML2, tube, Aerobic, at 25 (C), shaken=200 rpm
By: Sneha on 8-Aug-18
Media components: 1 g/L Bacto Peptone, 0.5 g/L Yeast Extract, 0.4 mM Magnesium sulfate, 0.25 mM Calcium chloride (final concentrations)
Specific Phenotypes
For 15 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Lipopolysaccharide biosynthesis
- Fructose and mannose metabolism
- Fatty acid metabolism
- Oxidative phosphorylation
- Glycine, serine and threonine metabolism
- Arginine and proline metabolism
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- High-mannose type N-glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Keratan sulfate biosynthesis
- Peptidoglycan biosynthesis
- Glycerolipid metabolism
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- Glycerophospholipid metabolism
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Carotenoid biosynthesis - General
- Zeatin biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Flavone and flavonol biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-serine biosynthesis I | 3 | 3 | 1 |
| L-cysteine biosynthesis IX (Trichomonas vaginalis) | 3 | 2 | 1 |
| alkane biosynthesis I | 3 | 1 | 1 |
| heptadecane biosynthesis | 3 | 1 | 1 |
| superpathway of L-serine and glycine biosynthesis I | 4 | 4 | 1 |
| glyphosate degradation III | 7 | 1 | 1 |
| (aminomethyl)phosphonate degradation | 8 | 1 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| mycobactin biosynthesis | 11 | 2 | 1 |