Experiment set7IT026 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Pepper

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.8 -3.2 anthranilate synthase, component II compare
Psyr_1983 -4.3 -6.4 3-isopropylmalate dehydratase, large subunit compare
Psyr_4609 -4.2 -15.9 anthranilate synthase, component I compare
Psyr_4270 -4.1 -9.5 serine hydroxymethyltransferase compare
Psyr_1984 -4.1 -4.7 3-isopropylmalate dehydratase, small subunit compare
Psyr_1212 -4.0 -3.6 type III secretion protein HrpO compare
Psyr_1269 -4.0 -3.8 phosphoribosylformylglycinamidine synthase compare
Psyr_0033 -4.0 -2.7 tryptophan synthase, alpha chain compare
Psyr_4897 -3.9 -5.3 imidazoleglycerol-phosphate dehydratase compare
Psyr_1350 -3.9 -5.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1198 -3.8 -4.0 type III secretion protein HrpF compare
Psyr_4133 -3.8 -14.7 histidinol dehydrogenase compare
Psyr_1663 -3.8 -6.2 phosphoribosylanthranilate isomerase compare
Psyr_1985 -3.8 -9.6 3-isopropylmalate dehydrogenase compare
Psyr_0529 -3.8 -5.1 Glycosyl transferase, group 1 compare
Psyr_3008 -3.7 -9.3 Undecaprenyl-diphosphatase compare
Psyr_3958 -3.6 -12.6 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_0846 -3.6 -14.2 acetolactate synthase, large subunit compare
Psyr_1748 -3.6 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0847 -3.6 -8.2 acetolactate synthase, small subunit compare
Psyr_1668 -3.5 -7.1 amidophosphoribosyltransferase compare
Psyr_0034 -3.5 -2.4 tryptophan synthase, beta chain compare
Psyr_2980 -3.5 -5.2 UDP-glucose pyrophosphorylase compare
Psyr_4580 -3.3 -5.5 anthranilate phosphoribosyltransferase compare
Psyr_1210 -3.3 -7.3 type III secretion protein HrcQa compare
Psyr_1669 -3.3 -11.4 O-succinylhomoserine sulfhydrylase compare
Psyr_4896 -3.3 -8.2 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0917 -3.2 -8.0 ABC-2 compare
Psyr_4132 -3.1 -9.7 histidinol phosphate aminotransferase apoenzyme compare
Psyr_1217 -3.1 -5.4 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_4134 -2.9 -10.8 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_1613 -2.9 -6.4 septum site-determining protein MinC compare
Psyr_5135 -2.9 -2.5 Protein of unknown function DUF37 compare
Psyr_0469 -2.9 -11.9 dihydroxyacid dehydratase compare
Psyr_0918 -2.9 -13.3 ABC transporter compare
Psyr_4407 -2.8 -3.3 phosphoribosylamine--glycine ligase compare
Psyr_0219 -2.8 -10.8 phosphomannomutase compare
Psyr_4894 -2.7 -5.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0386 -2.7 -5.3 phosphoribosyl-AMP cyclohydrolase compare
Psyr_3193 -2.7 -4.3 Transcription factor jumonji, jmjC compare
Psyr_4893 -2.6 -2.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1373 -2.6 -3.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4566 -2.6 -11.5 Peptidase M23B compare
Psyr_0531 -2.6 -2.5 LmbE-like protein compare
Psyr_2245 -2.6 -2.8 conserved domain protein compare
Psyr_0167 -2.6 -3.7 hypothetical protein compare
Psyr_1670 -2.4 -3.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_4940 -2.4 -2.2 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_1544 -2.4 -5.8 SirA-like protein compare
Psyr_1190 -2.4 -4.7 type III transcriptional regulator HrpR compare
Psyr_0385 -2.4 -3.6 phosphoribosyl-ATP pyrophosphatase compare
Psyr_4130 -2.3 -10.4 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1208 -2.3 -12.6 type III secretion protein HrcR compare
Psyr_0848 -2.3 -7.8 ketol-acid reductoisomerase compare
Psyr_1200 -2.3 -11.7 outer-membrane type III secretion protein HrcC compare
Psyr_1195 -2.3 -9.0 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
Psyr_1191 -2.3 -9.0 type III transcriptional regulator HrpS compare
Psyr_0474 -2.2 -7.0 homoserine O-acetyltransferase compare
Psyr_0532 -2.2 -6.8 conserved hypothetical protein compare
Psyr_0377 -2.2 -8.0 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1197 -2.2 -5.8 type III secretion protein HrpE compare
Psyr_4852 -2.2 -5.7 D-3-phosphoglycerate dehydrogenase compare
Psyr_2613 -2.2 -6.9 Cyclic peptide transporter compare
Psyr_1211 -2.2 -4.5 type III secretion protein HrpP compare
Psyr_0557 -2.2 -4.2 phosphoserine phosphatase compare
Psyr_1216 -2.2 -8.7 type III secretion outer membrane protein PopN compare
Psyr_4582 -2.2 -1.3 hypothetical protein compare
Psyr_1215 -2.1 -8.4 Type III secretion protein HrcV compare
Psyr_3179 -2.1 -3.7 DNA translocase FtsK compare
Psyr_1196 -2.1 -1.7 type III secretion protein HrpD compare
Psyr_4369 -2.1 -6.5 glutamate-5-semialdehyde dehydrogenase compare
Psyr_3202 -2.1 -2.7 NADH dehydrogenase subunit G compare
Psyr_3013 -2.1 -3.0 magnesium chelatase subunit ChlD compare
Psyr_0444 -2.0 -1.2 Malonate decarboxylase delta subunit compare
Psyr_0184 -1.9 -3.7 Protein of unknown function DUF484 compare
Psyr_4687 -1.9 -7.5 biotin synthase compare
Psyr_0473 -1.9 -5.5 Methionine biosynthesis MetW compare
Psyr_0920 -1.8 -13.2 Glycosyl transferase, group 1 compare
Psyr_1206 -1.8 -5.0 type III secretion protein HrcT compare
Psyr_0704 -1.7 -5.5 glutamate 5-kinase compare
Psyr_1257 -1.7 -6.2 2-isopropylmalate synthase compare
Psyr_1056 -1.7 -4.5 Poly(beta-D-mannuronate) lyase compare
Psyr_4151 -1.7 -1.3 Phosphocarrier HPr protein compare
Psyr_4340 -1.7 -6.1 phosphomethylpyrimidine kinase, putative compare
Psyr_4203 -1.7 -2.0 SsrA-binding protein compare
Psyr_1213 -1.7 -5.6 type III secretion cytoplasmic ATPase HrcN compare
Psyr_1205 -1.7 -6.0 type III secretion protein HrcU compare
Psyr_0915 -1.6 -6.9 NAD-dependent epimerase/dehydratase compare
Psyr_5132 -1.6 -3.3 Glucose-inhibited division protein A subfamily compare
Psyr_4341 -1.6 -6.2 thiamine-phosphate diphosphorylase compare
Psyr_2617 -1.6 -3.0 Secretion protein HlyD compare
Psyr_0822 -1.6 -1.6 1-phosphofructokinase compare
Psyr_0014 -1.6 -2.8 lipid A biosynthesis acyltransferase compare
Psyr_0393 -1.6 -3.7 Protein of unknown function DUF971 compare
Psyr_0951 -1.5 -2.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1193 -1.5 -2.5 type III helper protein HrpZ1 compare
Psyr_0919 -1.5 -8.9 Chromosome segregation ATPase-like protein compare
Psyr_1218 -1.5 -7.9 type III helper protein HrpK1 compare
Psyr_0025 -1.5 -3.3 shikimate dehydrogenase compare
Psyr_1410 -1.5 -4.4 Holliday junction DNA helicase RuvB compare
Psyr_1408 -1.5 -2.3 Holliday junction endonuclease RuvC compare
Psyr_5065 -1.5 -5.7 ATP-dependent DNA helicase UvrD compare
Psyr_4830 -1.5 -2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4844 -1.4 -6.4 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_3698 -1.4 -4.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_0576 -1.4 -1.0 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4087 -1.4 -1.2 Protein of unknown function DUF520 compare
Psyr_4684 -1.4 -2.2 biotin synthesis protein BioC compare
Psyr_2071 -1.4 -2.6 outer membrane lipoprotein OprI compare
Psyr_3701 -1.4 -2.2 thioredoxin, putative compare
Psyr_3637 -1.4 -9.3 Glycosyl transferase, family 4 compare
Psyr_1747 -1.4 -3.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_4362 -1.4 -2.8 Rare lipoprotein A compare
Psyr_4730 -1.4 -1.5 FecR protein compare
Psyr_0914 -1.3 -7.1 Glycosyl transferase, group 1 compare
Psyr_0454 -1.3 -3.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4902 -1.3 -1.9 Protein of unknown function DUF495 compare
Psyr_0261 -1.3 -4.0 conserved hypothetical protein compare
Psyr_4408 -1.3 -5.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3638 -1.3 -3.5 UDP-glucose 4-epimerase, putative compare
Psyr_4786 -1.3 -1.5 hypothetical protein compare
Psyr_1152 -1.3 -3.2 transcriptional regulator, ArsR family compare
Psyr_0487 -1.3 -2.4 glutathione synthase compare
Psyr_0936 -1.3 -7.6 Glycosyl transferase, group 1 compare
Psyr_2807 -1.2 -1.3 NinB compare
Psyr_4100 -1.2 -4.1 D-alanine--D-alanine ligase compare
Psyr_1372 -1.2 -3.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3886 -1.2 -1.2 methionyl-tRNA synthetase compare
Psyr_3554 -1.2 -1.1 Carbon storage regulator compare
Psyr_2251 -1.2 -1.6 Phosphonate metabolism PhnG compare
Psyr_4464 -1.2 -1.1 lipoprotein, putative compare
Psyr_3677 -1.2 -2.0 Aminotransferase, class I and II compare
Psyr_4116 -1.2 -1.7 Transport-associated protein compare
Psyr_4460 -1.2 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3636 -1.2 -7.3 Polysaccharide biosynthesis protein CapD compare
Psyr_2312 -1.1 -1.0 Protein of unknown function DUF24 compare
Psyr_3850 -1.1 -3.5 lipoprotein, putative compare
Psyr_4136 -1.1 -1.6 BolA-like protein compare
Psyr_2897 -1.1 -3.5 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3808 -1.1 -1.0 hypothetical protein compare
Psyr_3667 -1.1 -1.9 conserved hypothetical protein compare
Psyr_2137 -1.1 -2.2 molybdopterin molybdochelatase compare
Psyr_2820 -1.1 -1.7 RecT protein compare
Psyr_3841 -1.1 -1.5 conserved hypothetical protein compare
Psyr_4140 -1.1 -1.9 Protein of unknown function DUF140 compare
Psyr_4512 -1.1 -4.0 putative phage-related protein compare
Psyr_0214 -1.1 -2.2 conserved hypothetical protein compare
Psyr_4091 -1.1 -3.6 8-oxo-dGTPase compare
Psyr_0378 -1.1 -5.0 Glycosyl transferase, family 2 compare
Psyr_1057 -1.1 -4.8 alginate biosynthesis protein AlgX compare
Psyr_4882 -1.1 -4.6 protein translocase subunit secB compare
Psyr_3462 -1.1 -1.7 conserved hypothetical protein compare
Psyr_0534 -1.1 -7.0 membrane protein, putative compare
Psyr_4740 -1.1 -4.0 thiazole-phosphate synthase compare
Psyr_0826 -1.1 -3.6 glucose-6-phosphate isomerase compare
Psyr_4991 -1.1 -1.6 hypothetical protein compare
Psyr_0690 -1.1 -3.5 3-hydroxyisobutyrate dehydrogenase compare
Psyr_3854 -1.0 -0.8 OmpA/MotB compare
Psyr_4887 -1.0 -5.4 Peptidase S41A, C-terminal protease compare
Psyr_4686 -1.0 -3.7 8-amino-7-oxononanoate synthase compare
Psyr_3844 -1.0 -3.6 conserved hypothetical protein compare
Psyr_1511 -1.0 -3.0 type II secretion system protein E compare
Psyr_4361 -1.0 -2.4 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3429 -1.0 -1.8 CheW-like protein compare
Psyr_4634 -1.0 -1.1 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_1667 -1.0 -3.0 Colicin V production protein compare
Psyr_2049 -1.0 -2.2 K+ transporting ATPase, KdpC subunit compare
Psyr_3662 -1.0 -1.5 NAD(P)H dehydrogenase (quinone) compare
Psyr_4804 -1.0 -1.8 conserved hypothetical protein compare
Psyr_1907 -1.0 -1.8 GTP cyclohydrolase I compare
Psyr_RNA61 -1.0 -2.3 tRNA-Gly compare
Psyr_4224 -1.0 -1.6 conserved hypothetical protein compare
Psyr_3090 -1.0 -2.0 hypothetical protein compare
Psyr_3791 -1.0 -1.9 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_2202 -1.0 -1.6 ABC transporter compare
Psyr_4417 -1.0 -1.4 Ferredoxin--nitrite reductase compare
Psyr_2474 -1.0 -2.5 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_4802 -1.0 -2.3 Secretion protein HlyD compare
Psyr_4995 -1.0 -1.7 RHS protein compare
Psyr_5102 -1.0 -1.3 ABC transporter compare
Psyr_3342 -1.0 -1.7 conserved hypothetical protein compare
Psyr_2115 -1.0 -1.4 Response regulator receiver compare
Psyr_3419 -0.9 -2.5 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_RNA28 -0.9 -1.3 tRNA-Val compare
Psyr_3805 -0.9 -1.7 hypothetical protein compare
Psyr_4928 -0.9 -2.0 conserved hypothetical protein compare
Psyr_1247 -0.9 -1.4 conserved hypothetical protein compare
Psyr_0044 -0.9 -1.0 transferase hexapeptide repeat protein compare
Psyr_4842 -0.9 -3.0 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_0555 -0.9 -2.8 Protein of unknown function DUF330 compare
Psyr_0769 -0.9 -2.3 conserved hypothetical membrane-anchored protein compare
Psyr_1791 -0.9 -2.5 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_0781 -0.9 -2.1 Protein-glutamate methylesterase compare
Psyr_3620 -0.9 -1.2 hypothetical protein compare
Psyr_1121 -0.9 -1.2 6-phosphogluconolactonase compare
Psyr_2612 -0.9 -1.5 syrP protein, putative compare
Psyr_0835 -0.9 -3.4 transcriptional regulator, TraR/DksA family compare
Psyr_0734 -0.9 -2.0 Protein of unknown function DUF159 compare
Psyr_5129 -0.9 -1.9 chromosome segregation DNA-binding protein compare
Psyr_3368 -0.9 -3.1 Protein of unknown function DUF451 compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments