Experiment set7IT026 for Herbaspirillum seropedicae SmR1

Compare to:

D-Glucose carbon source with ammonium chloride; anaerobic; 8 days

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS01295 +4.3 39.3 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
HSERO_RS10675 +2.3 17.5 diguanylate cyclase compare
HSERO_RS19535 +1.7 5.4 nucleotide-binding protein compare
HSERO_RS23885 +1.6 13.5 XRE family transcriptional regulator compare
HSERO_RS16885 +1.3 0.8 magnesium-transporting ATPase compare
HSERO_RS05505 +1.3 6.2 transcriptional regulator compare
HSERO_RS10600 +1.2 9.1 diguanylate phosphodiesterase compare
HSERO_RS08405 +1.2 0.6 membrane protein compare
HSERO_RS04290 +1.1 5.5 DNA-binding protein compare
HSERO_RS19285 +1.1 7.3 long-chain fatty acid--CoA ligase compare
HSERO_RS09420 +1.0 3.0 HAD family hydrolase compare
HSERO_RS07025 +1.0 4.4 ATP-dependent Clp protease ClpS compare
HSERO_RS16835 +1.0 7.3 phosphatidylglycerophosphatase compare
HSERO_RS19090 +1.0 2.7 C4-dicarboxylate ABC transporter compare
HSERO_RS08320 +1.0 6.9 amino acid ABC transporter substrate-binding protein compare
HSERO_RS16110 +0.9 2.5 hypothetical protein compare
HSERO_RS16150 +0.9 5.2 arginyl-tRNA-protein transferase compare
HSERO_RS18965 +0.9 2.1 thiopurine S-methyltransferase compare
HSERO_RS00450 +0.9 3.1 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS03420 +0.9 1.5 cytochrome B561 compare
HSERO_RS21375 +0.9 2.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS19265 +0.9 1.9 LysR family transcriptional regulator compare
HSERO_RS09335 +0.9 2.4 DNA-3-methyladenine glycosylase compare
HSERO_RS03085 +0.8 2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS23840 +0.8 7.2 hypothetical protein compare
HSERO_RS08605 +0.8 1.3 Hsp33 chaperonin compare
HSERO_RS03105 +0.8 4.3 anti-sigma factor antagonist compare
HSERO_RS20035 +0.8 2.7 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS16825 +0.8 1.1 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS14770 +0.8 4.5 GTP-binding protein HflX compare
HSERO_RS18365 +0.7 2.0 hypothetical protein compare
HSERO_RS08035 +0.7 1.7 GCN5 family N-acetyltransferase compare
HSERO_RS03190 +0.7 2.1 glutathione S-transferase compare
HSERO_RS12995 +0.7 1.4 DNAase compare
HSERO_RS07730 +0.7 2.8 ferredoxin-NADP reductase compare
HSERO_RS09910 +0.7 1.6 integration host factor subunit alpha compare
HSERO_RS12780 +0.6 5.1 diguanylate phosphodiesterase compare
HSERO_RS21405 +0.6 3.4 glutathione S-transferase compare
HSERO_RS12775 +0.6 3.4 ABC transporter substrate-binding protein compare
HSERO_RS13720 +0.6 2.7 hypothetical protein compare
HSERO_RS14745 +0.6 2.9 nicotinate phosphoribosyltransferase compare
HSERO_RS07465 +0.6 3.2 alpha/beta hydrolase compare
HSERO_RS02015 +0.6 3.4 peptidase M23 compare
HSERO_RS20980 +0.6 3.4 oxidoreductase compare
HSERO_RS09875 +0.6 2.4 hypothetical protein compare
HSERO_RS03840 +0.6 2.5 hypothetical protein compare
HSERO_RS12015 +0.6 1.1 molecular chaperone DnaK compare
HSERO_RS10670 +0.6 1.3 signal transduction protein compare
HSERO_RS10665 +0.6 2.3 coproporphyrinogen III oxidase compare
HSERO_RS15655 +0.6 0.8 methylcitrate synthase compare
HSERO_RS15240 +0.6 2.4 XRE family transcriptional regulator compare
HSERO_RS23735 +0.6 4.4 phosphodiesterase compare
HSERO_RS04025 +0.6 2.5 hypothetical protein compare
HSERO_RS02610 +0.6 1.8 hypothetical protein compare
HSERO_RS16275 +0.6 1.3 5-hydroxyisourate hydrolase compare
HSERO_RS01160 +0.6 1.4 LysR family transcriptional regulator compare
HSERO_RS15435 +0.6 0.9 enoyl-CoA hydratase compare
HSERO_RS19300 +0.5 2.4 threonine transporter compare
HSERO_RS23655 +0.5 1.5 phosphonate ABC transporter permease compare
HSERO_RS12715 +0.5 2.1 hypothetical protein compare
HSERO_RS14825 +0.5 2.7 23S rRNA methyltransferase compare
HSERO_RS06805 +0.5 1.3 transcriptional regulator compare
HSERO_RS20720 +0.5 3.4 GMP synthase compare
HSERO_RS11820 +0.5 1.3 hypothetical protein compare
HSERO_RS15480 +0.5 2.4 transcriptional regulator compare
HSERO_RS08150 +0.5 2.5 phasin family protein compare
HSERO_RS13880 +0.5 0.9 hypothetical protein compare
HSERO_RS13620 +0.5 3.0 diguanylate cyclase compare
HSERO_RS03700 +0.5 1.7 type VI secretion protein compare
HSERO_RS16210 +0.5 2.3 hypothetical protein compare
HSERO_RS11465 +0.5 1.1 sodium:proton antiporter compare
HSERO_RS08165 +0.5 1.9 DNA-binding protein compare
HSERO_RS19210 +0.5 1.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS19940 +0.5 1.9 ABC transporter substrate-binding protein compare
HSERO_RS03120 +0.5 1.8 chemotaxis protein CheW compare
HSERO_RS22735 +0.5 3.2 sugar ABC transporter substrate-binding protein compare
HSERO_RS14025 +0.5 1.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS17915 +0.5 2.6 transposase compare
HSERO_RS13335 +0.5 0.9 hypothetical protein compare
HSERO_RS11105 +0.5 0.8 beta-lactamase compare
HSERO_RS18045 +0.5 0.7 hypothetical protein compare
HSERO_RS18095 +0.5 1.6 antibiotic biosynthesis monooxygenase compare
HSERO_RS16295 +0.5 2.9 LysR family transcriptional regulator compare
HSERO_RS04220 +0.5 1.9 epoxyqueuosine reductase compare
HSERO_RS12660 +0.4 2.0 pirin compare
HSERO_RS13475 +0.4 1.9 C4-dicarboxylate ABC transporter compare
HSERO_RS16180 +0.4 2.6 membrane protein compare
HSERO_RS02555 +0.4 3.0 chemotaxis protein compare
HSERO_RS02425 +0.4 3.6 transcriptional activator compare
HSERO_RS09635 +0.4 2.4 transcriptional regulator compare
HSERO_RS01435 +0.4 1.5 biopolymer transporter ExbB compare
HSERO_RS23550 +0.4 2.8 ABC transporter ATP-binding protein compare
HSERO_RS19275 +0.4 2.2 acyl-CoA hydrolase compare
HSERO_RS08670 +0.4 2.5 hypothetical protein compare
HSERO_RS16695 +0.4 1.8 hypothetical protein compare
HSERO_RS15630 +0.4 0.3 exodeoxyribonuclease III compare
HSERO_RS14515 +0.4 1.8 hypothetical protein compare
HSERO_RS19730 +0.4 2.9 short-chain dehydrogenase compare
HSERO_RS08700 +0.4 0.9 hypothetical protein compare
HSERO_RS04880 +0.4 2.4 phosphodiesterase compare
HSERO_RS06450 +0.4 2.2 dihydrodipicolinate synthetase compare
HSERO_RS00780 +0.4 2.0 sugar transferase compare
HSERO_RS07675 +0.4 0.9 multidrug DMT transporter compare
HSERO_RS22020 +0.4 1.9 membrane protein compare
HSERO_RS11800 +0.4 1.3 hypothetical protein compare
HSERO_RS14395 +0.4 0.9 oxygen-binding protein compare
HSERO_RS11315 +0.4 0.8 histidine kinase compare
HSERO_RS15055 +0.4 1.3 membrane protein compare
HSERO_RS18630 +0.4 0.8 hemerythrin compare
HSERO_RS09180 +0.4 3.1 transcriptional regulator compare
HSERO_RS14680 +0.4 2.3 histidine kinase compare
HSERO_RS20830 +0.4 2.1 ABC transporter substrate-binding protein compare
HSERO_RS09415 +0.4 1.4 ribosomal large subunit pseudouridine synthase C compare
HSERO_RS13725 +0.4 1.2 hypothetical protein compare
HSERO_RS01170 +0.4 1.7 metal-dependent hydrolase compare
HSERO_RS02575 +0.4 1.7 diguanylate cyclase compare
HSERO_RS01825 +0.4 1.4 RNA pyrophosphohydrolase compare
HSERO_RS05080 +0.4 2.6 PEP-CTERM domain protein compare
HSERO_RS02430 +0.4 2.5 sulfurtransferase compare
HSERO_RS09480 +0.4 1.4 radical SAM protein compare
HSERO_RS05035 +0.4 2.0 glyoxalase compare
HSERO_RS21000 +0.4 2.5 aminotransferase DegT compare
HSERO_RS02300 +0.4 1.5 nitrate ABC transporter ATPase compare
HSERO_RS15065 +0.4 1.7 laccase compare
HSERO_RS17485 +0.4 0.8 transcription regulator protein compare
HSERO_RS20795 +0.4 1.8 membrane protein compare
HSERO_RS21005 +0.4 2.7 asparagine synthase compare
HSERO_RS08495 +0.4 2.8 hypothetical protein compare
HSERO_RS04165 +0.4 0.8 hypothetical protein compare
HSERO_RS16960 +0.4 1.8 Fe(II)-dependent oxygenase compare
HSERO_RS07410 +0.4 1.8 LysR family transcriptional regulator compare
HSERO_RS22765 +0.4 2.2 iron dicitrate transport regulator FecR compare
HSERO_RS03015 +0.4 1.3 hypothetical protein compare
HSERO_RS10975 +0.4 1.5 stomatin 2 compare
HSERO_RS06015 +0.4 0.9 hisitidine kinase compare
HSERO_RS04340 +0.4 2.7 gamma-glutamyl ligase compare
HSERO_RS16080 +0.4 1.6 histidine kinase compare
HSERO_RS02760 +0.4 1.1 hypothetical protein compare
HSERO_RS21040 +0.4 2.4 3-oxoacyl-ACP synthase compare
HSERO_RS05265 +0.4 1.2 L-fucono-1,5-lactonase (from data) compare
HSERO_RS12685 +0.4 1.2 isochorismatase hydrolase compare
HSERO_RS11505 +0.4 1.4 D-ribose pyranase compare
HSERO_RS17720 +0.4 2.7 aminopeptidase N compare
HSERO_RS02930 +0.4 1.6 cupin compare
HSERO_RS11490 +0.4 2.6 D-ribose ABC transporter, permease component RbsC (from data) compare
HSERO_RS20900 +0.4 1.8 type IV pilus biogenesis protein compare
HSERO_RS07635 +0.4 1.2 transcriptional regulator compare
HSERO_RS21635 +0.4 1.4 DNA-directed DNA polymerase compare
HSERO_RS09190 +0.4 2.0 ABC transporter ATP-binding protein compare
HSERO_RS08585 +0.4 2.4 RNA methyltransferase compare
HSERO_RS13440 +0.4 1.1 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase compare
HSERO_RS02860 +0.3 1.8 MFS transporter compare
HSERO_RS16220 +0.3 1.2 hypothetical protein compare
HSERO_RS04230 +0.3 1.8 LuxR family transcriptional regulator compare
HSERO_RS21035 +0.3 1.6 hypothetical protein compare
HSERO_RS12400 +0.3 1.8 signal peptidase compare
HSERO_RS21950 +0.3 1.2 membrane protein compare
HSERO_RS08395 +0.3 2.4 2-aminoadipate aminotransferase compare
HSERO_RS21125 +0.3 2.5 malate:quinone oxidoreductase compare
HSERO_RS09925 +0.3 1.0 hypothetical protein compare
HSERO_RS20625 +0.3 0.7 phenylacetate-CoA oxygenase compare
HSERO_RS13550 +0.3 2.4 diguanylate phosphodiesterase compare
HSERO_RS11215 +0.3 1.8 methionine sulfoxide reductase B compare
HSERO_RS00245 +0.3 1.9 hypothetical protein compare
HSERO_RS10615 +0.3 2.2 transcription elongation factor GreB compare
HSERO_RS12395 +0.3 1.2 TetR family transcriptional regulator compare
HSERO_RS07155 +0.3 1.8 peptidase C69 compare
HSERO_RS05330 +0.3 1.0 glucose dehydrogenase compare
HSERO_RS12630 +0.3 1.0 chemotaxis protein CheY compare
HSERO_RS09830 +0.3 1.9 membrane protein compare
HSERO_RS08925 +0.3 1.4 amino acid ABC transporter ATPase compare
HSERO_RS02810 +0.3 1.7 methyltransferase compare
HSERO_RS00365 +0.3 2.2 membrane protein compare
HSERO_RS22095 +0.3 0.8 hypothetical protein compare
HSERO_RS03110 +0.3 2.3 chemotaxis protein CheA compare
HSERO_RS08910 +0.3 1.3 amino acid ABC transporter substrate-binding protein compare
HSERO_RS06290 +0.3 2.5 methyl-accepting chemotaxis protein compare
HSERO_RS16250 +0.3 1.0 iron transporter compare
HSERO_RS13590 +0.3 1.5 D-galactose-1-dehydrogenase compare
HSERO_RS06985 +0.3 1.3 transglutaminase compare
HSERO_RS20600 +0.3 1.6 transcription regulator protein compare
HSERO_RS03245 +0.3 2.0 ABC transporter substrate-binding protein compare
HSERO_RS22310 +0.3 1.4 LysR family transcriptional regulator compare
HSERO_RS14375 +0.3 0.8 IscN protein compare
HSERO_RS10505 +0.3 1.7 phosphatidylinositol kinase compare
HSERO_RS11810 +0.3 1.7 hypothetical protein compare
HSERO_RS02900 +0.3 2.1 ammonium transporter compare
HSERO_RS10560 +0.3 1.9 membrane protein compare
HSERO_RS01425 +0.3 1.3 DNA-binding protein compare
HSERO_RS10530 +0.3 2.1 RND transporter compare
HSERO_RS05560 +0.3 1.6 ABC transporter substrate-binding protein compare
HSERO_RS04070 +0.3 1.3 hypothetical protein compare
HSERO_RS17820 +0.3 1.4 Lipid A core--O-antigen ligase compare
HSERO_RS20815 +0.3 1.2 tRNA methyltransferase compare
HSERO_RS13615 +0.3 1.1 alcohol dehydrogenase compare
HSERO_RS17960 +0.3 1.5 hypothetical protein compare
HSERO_RS19345 +0.3 2.1 amino acid ABC transporter ATP-binding protein compare
HSERO_RS09265 +0.3 1.8 peptidase C69 compare
HSERO_RS07085 +0.3 1.6 cysteine hydrolase compare
HSERO_RS22740 +0.3 2.0 ABC transporter permease compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen fixation control D-Glucose in Herbaspirillum seropedicae SmR1

For nitrogen fixation control D-Glucose across organisms