Experiment set7IT025 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_18480 -4.5 -17.5 lipid III flippase WzxE compare
IAI47_05090 -4.1 -4.9 hypothetical protein compare
IAI47_13685 -4.1 -3.3 Tol-Pal system protein TolB compare
IAI47_12470 -3.7 -18.4 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_14075 -3.7 -3.5 transcription antiterminator/RNA stability regulator CspE compare
IAI47_17000 -3.5 -15.0 lipoprotein NlpI compare
IAI47_00760 -3.4 -5.9 envelope stress response regulator transcription factor CpxR compare
IAI47_08085 -3.4 -5.1 helix-turn-helix domain-containing protein compare
IAI47_08700 -3.4 -5.6 RNA chaperone ProQ compare
IAI47_08705 -3.3 -5.9 carboxy terminal-processing peptidase compare
IAI47_13695 -3.2 -0.9 colicin uptake protein TolR compare
IAI47_04110 -3.1 -22.4 two-component sensor histidine kinase BarA compare
IAI47_07020 -2.9 -1.7 hypothetical protein compare
IAI47_09235 -2.9 -1.7 type I DNA topoisomerase compare
IAI47_06395 -2.8 -1.8 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_09305 -2.7 -4.6 cyclic di-GMP phosphodiesterase compare
IAI47_11415 -2.6 -1.5 hypothetical protein compare
IAI47_05070 -2.5 -0.7 outer membrane protein assembly factor BamB compare
IAI47_10845 -2.4 -4.2 major outer membrane lipoprotein compare
IAI47_13700 -2.3 -4.0 Tol-Pal system protein TolQ compare
IAI47_04045 -2.2 -11.6 LOG family protein compare
IAI47_00780 -2.1 -4.6 6-phosphofructokinase compare
IAI47_01830 -2.1 -13.8 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_18470 -2.0 -14.2 ECA oligosaccharide polymerase compare
IAI47_16195 -2.0 -9.9 transaldolase compare
IAI47_05425 -2.0 -4.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_09635 -2.0 -4.8 hypothetical protein compare
IAI47_06655 -1.9 -4.7 1-phosphofructokinase compare
IAI47_09580 -1.9 -3.0 FNR family transcription factor compare
IAI47_05035 -1.9 -3.5 nucleoside-diphosphate kinase compare
IAI47_01475 -1.9 -9.0 MurR/RpiR family transcriptional regulator compare
IAI47_15485 -1.9 -1.3 molecular chaperone Skp compare
IAI47_06370 -1.8 -4.4 NADH-quinone oxidoreductase subunit C/D compare
IAI47_09360 -1.8 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_18215 -1.8 -2.3 Trk system potassium transporter TrkH compare
IAI47_16420 -1.8 -10.2 LacI family DNA-binding transcriptional regulator compare
IAI47_04300 -1.7 -6.8 recombinase RecA compare
IAI47_20705 -1.7 -1.1 sulfur carrier protein ThiS compare
IAI47_06410 -1.7 -3.8 NADH-quinone oxidoreductase subunit L compare
IAI47_00465 -1.7 -3.8 ribosome-dependent GTPase TypA compare
IAI47_18830 -1.7 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_01355 -1.7 -5.7 universal stress protein UspA compare
IAI47_17155 -1.6 -8.1 calcium/sodium antiporter compare
IAI47_07030 -1.6 -5.9 HAD family hydrolase compare
IAI47_18400 -1.6 -2.4 tyrosine recombinase XerC compare
IAI47_18490 -1.6 -3.8 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_18495 -1.6 -8.0 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_18475 -1.6 -7.9 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_18485 -1.5 -7.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_06385 -1.5 -3.1 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_07490 -1.5 -2.3 DNA-binding protein compare
IAI47_06420 -1.5 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_17560 -1.5 -1.2 ROK family transcriptional regulator compare
IAI47_13885 -1.5 -1.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_10545 -1.5 -3.0 hypothetical protein compare
IAI47_13155 -1.5 -1.6 H-NS histone family protein compare
IAI47_00655 -1.5 -2.3 glycosyltransferase family 4 protein compare
IAI47_08165 -1.5 -5.3 flagella biosynthesis regulatory protein FliZ compare
IAI47_06400 -1.5 -1.7 NADH-quinone oxidoreductase subunit J compare
IAI47_00940 -1.4 -7.8 HTH-type transcriptional repressor FabR compare
IAI47_19690 -1.4 -0.9 hypothetical protein compare
IAI47_18520 -1.4 -9.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_17415 -1.4 -3.9 DUF3304 domain-containing protein compare
IAI47_13770 -1.4 -6.7 citrate synthase compare
IAI47_06405 -1.4 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_12305 -1.4 -5.3 hypothetical protein compare
IAI47_00835 -1.4 -3.9 cell division protein ZapB compare
IAI47_14325 -1.4 -1.6 ribosome-associated protein YbcJ compare
IAI47_17165 -1.4 -8.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_04775 -1.4 -2.8 SIR2 family protein compare
IAI47_01000 -1.4 -9.8 HTH-type transcriptional regulator HdfR compare
IAI47_13625 -1.4 -5.5 CDF family zinc transporter ZitB compare
IAI47_14295 -1.4 -3.4 hypothetical protein compare
IAI47_11995 -1.4 -4.3 beta-N-acetylhexosaminidase compare
IAI47_17020 -1.4 -2.9 30S ribosome-binding factor RbfA compare
IAI47_16390 -1.3 -0.7 tRNA-Leu compare
IAI47_15155 -1.3 -3.5 DUF943 family protein compare
IAI47_21595 -1.3 -8.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_03680 -1.3 -8.8 transketolase compare
IAI47_17005 -1.3 -5.0 polyribonucleotide nucleotidyltransferase compare
IAI47_15835 -1.2 -7.8 beta-lactamase regulator AmpE compare
IAI47_03550 -1.2 -7.6 membrane-bound lytic murein transglycosylase MltC compare
IAI47_17235 -1.2 -7.4 stringent starvation protein A compare
IAI47_11515 -1.2 -1.2 hypothetical protein compare
IAI47_12880 -1.2 -9.3 formate C-acetyltransferase compare
IAI47_12960 -1.2 -7.0 ATP-dependent endonuclease compare
IAI47_02255 -1.2 -7.5 DUF1992 domain-containing protein compare
IAI47_12925 -1.1 -2.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_12790 -1.1 -0.6 chromosome partition protein MukE compare
IAI47_11635 -1.1 -2.3 hypothetical protein compare
IAI47_05155 -1.1 -8.9 polyphosphate kinase 1 compare
IAI47_06365 -1.1 -2.5 NADH-quinone oxidoreductase subunit B compare
IAI47_02260 -1.1 -5.3 Zn(2+)-responsive transcriptional regulator compare
IAI47_14730 -1.1 -0.8 exodeoxyribonuclease VII small subunit compare
IAI47_16085 -1.1 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_02400 -1.1 -1.3 YhdT family protein compare
IAI47_12545 -1.1 -1.8 general stress protein compare
IAI47_11375 -1.1 -1.0 hypothetical protein compare
IAI47_07350 -1.1 -0.6 hypothetical protein compare
IAI47_08445 -1.1 -0.7 Holliday junction branch migration protein RuvA compare
IAI47_01530 -1.1 -4.4 DUF1145 family protein compare
IAI47_07025 -1.1 -4.0 glycosyltransferase family 4 protein compare
IAI47_13415 -1.1 -5.5 L,D-transpeptidase family protein compare
IAI47_11475 -1.1 -0.9 hypothetical protein compare
IAI47_00500 -1.1 -7.3 ATP-dependent DNA helicase RecG compare
IAI47_20595 -1.1 -2.7 GhoT/OrtT family toxin compare
IAI47_04805 -1.1 -2.6 outer membrane protein assembly factor BamE compare
IAI47_03590 -1.1 -4.5 YggT family protein compare
IAI47_13690 -1.1 -0.4 cell envelope integrity protein TolA compare
IAI47_12650 -1.0 -3.9 macrodomain Ter protein MatP compare
IAI47_08840 -1.0 -3.6 ribonuclease D compare
IAI47_07485 -1.0 -2.6 DUF4756 family protein compare
IAI47_17475 -1.0 -2.2 type VI secretion system contractile sheath small subunit compare
IAI47_08960 -1.0 -4.0 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_05660 -1.0 -5.1 serine protease compare
IAI47_17965 -1.0 -7.4 glucose-6-phosphate isomerase compare
IAI47_13545 -1.0 -5.4 6-phosphogluconolactonase compare
IAI47_11445 -1.0 -3.3 ankyrin repeat domain-containing protein compare
IAI47_18410 -1.0 -2.9 diaminopimelate epimerase compare
IAI47_03555 -1.0 -3.7 oxidative damage protection protein compare
IAI47_06390 -1.0 -1.9 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_02750 -1.0 -7.9 class 1 fructose-bisphosphatase compare
IAI47_06450 -1.0 -2.4 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_11625 -1.0 -1.3 DUF1311 domain-containing protein compare
IAI47_12885 -1.0 -4.6 pyruvate formate lyase 1-activating protein compare
IAI47_12260 -0.9 -3.6 hypothetical protein compare
IAI47_08625 -0.9 -3.2 hypothetical protein compare
IAI47_06030 -0.9 -2.9 hypothetical protein compare
IAI47_00110 -0.9 -3.6 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_04710 -0.9 -2.1 hypothetical protein compare
IAI47_06380 -0.9 -1.6 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_08450 -0.9 -1.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_09055 -0.9 -6.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_11470 -0.9 -2.1 IS1 family transposase compare
IAI47_17380 -0.9 -4.0 phosphatidate cytidylyltransferase compare
IAI47_17205 -0.9 -1.0 PTS phosphocarrier protein NPr compare
IAI47_18420 -0.9 -6.1 class I adenylate cyclase compare
IAI47_04435 -0.9 -6.6 ATP-dependent chaperone ClpB compare
IAI47_10755 -0.9 -0.9 DUF1289 domain-containing protein compare
IAI47_17140 -0.9 -5.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
IAI47_16355 -0.9 -4.1 YtjB family periplasmic protein compare
IAI47_19935 -0.9 -2.9 hypothetical protein compare
IAI47_11425 -0.9 -2.5 hypothetical protein compare
IAI47_16520 -0.9 -4.7 hypothetical protein compare
IAI47_21665 -0.9 -1.1 DUF333 domain-containing protein compare
IAI47_08065 -0.9 -2.8 acyltransferase compare
IAI47_01680 -0.9 -7.0 1,4-alpha-glucan branching enzyme compare
IAI47_17645 -0.9 -1.5 hypothetical protein compare
IAI47_01545 -0.9 -2.5 cell division ATP-binding protein FtsE compare
IAI47_01365 -0.8 -1.3 inorganic phosphate transporter PitA compare
IAI47_14230 -0.8 -3.5 DotU family type IV/VI secretion system protein compare
IAI47_17420 -0.8 -4.1 DUF3304 domain-containing protein compare
IAI47_10430 -0.8 -1.4 hypothetical protein compare
IAI47_08680 -0.8 -3.8 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_18015 -0.8 -6.3 homoserine O-succinyltransferase compare
IAI47_04865 -0.8 -1.1 SoxR-reducing system protein RseC compare
IAI47_09750 -0.8 -4.1 ROK family transcriptional regulator compare
IAI47_01625 -0.8 -1.9 GNAT family N-acetyltransferase compare
IAI47_00505 -0.8 -3.2 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_05510 -0.8 -4.2 putative DNA-binding transcriptional regulator compare
IAI47_13195 -0.8 -3.5 DNA starvation/stationary phase protection protein Dps compare
IAI47_06325 -0.8 -3.4 acetate kinase compare
IAI47_20415 -0.8 -4.3 two-component system response regulator DcuR compare
IAI47_01005 -0.8 -4.7 DUF413 domain-containing protein compare
IAI47_07180 -0.8 -4.3 DUF496 family protein compare
IAI47_19950 -0.8 -3.9 SDR family oxidoreductase compare
IAI47_06415 -0.8 -2.2 NADH-quinone oxidoreductase subunit M compare
IAI47_01750 -0.8 -3.9 glycerol-3-phosphate dehydrogenase compare
IAI47_00675 -0.8 -5.2 glycosyltransferase family 9 protein compare
IAI47_16810 -0.8 -5.6 hypothetical protein compare
IAI47_15415 -0.8 -2.6 aminoacyl-tRNA hydrolase compare
IAI47_21600 -0.8 -2.6 EamA family transporter compare
IAI47_05665 -0.8 -2.5 hypothetical protein compare
IAI47_18530 -0.8 -1.7 thioredoxin TrxA compare
IAI47_11600 -0.8 -2.4 protein of avirulence locus ImpE compare
IAI47_04235 -0.7 -4.3 RNA polymerase sigma factor RpoS compare
IAI47_16250 -0.7 -2.1 inosine/xanthosine triphosphatase compare
IAI47_11420 -0.7 -1.2 hypothetical protein compare
IAI47_21545 -0.7 -4.9 SgcJ/EcaC family oxidoreductase compare
IAI47_06425 -0.7 -4.0 GNAT family N-acetyltransferase compare
IAI47_14940 -0.7 -1.2 YaiI/YqxD family protein compare
IAI47_14205 -0.7 -3.2 hypothetical protein compare
IAI47_18775 -0.7 -2.5 hypothetical protein compare
IAI47_02625 -0.7 -5.3 ribonuclease R compare
IAI47_21050 -0.7 -3.6 beta-lactamase family protein compare
IAI47_02990 -0.7 -4.2 hypothetical protein compare
IAI47_07040 -0.7 -1.6 acyltransferase compare
IAI47_17460 -0.7 -3.2 DotU family type IV/VI secretion system protein compare
IAI47_15980 -0.7 -4.6 catabolite repressor/activator compare
IAI47_17815 -0.7 -5.9 excinuclease ABC subunit UvrA compare
IAI47_21675 -0.7 -3.0 helix-turn-helix domain-containing protein compare
IAI47_17285 -0.7 -1.8 entericidin A/B family lipoprotein compare
IAI47_01695 -0.7 -5.3 glycogen synthase GlgA compare
IAI47_13795 -0.7 -3.7 5-oxoprolinase subunit PxpA compare
IAI47_03730 -0.7 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
IAI47_16875 -0.7 -4.0 lysophospholipid transporter LplT compare
IAI47_08440 -0.7 -0.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_03375 -0.7 -4.4 peptide chain release factor 3 compare
IAI47_20780 -0.7 -2.0 cupin domain-containing protein compare
IAI47_03295 -0.7 -3.3 cupin domain-containing protein compare


Specific Phenotypes

For 8 genes in this experiment

For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms