Experiment set7IT025 for Herbaspirillum seropedicae SmR1

Compare to:

D-Glucose carbon source with ammonium chloride; anaerobic; 3 days

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS05505 +1.6 4.1 transcriptional regulator compare
HSERO_RS18365 +1.5 7.0 hypothetical protein compare
HSERO_RS01295 +1.5 10.7 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
HSERO_RS03085 +1.4 4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS19265 +1.4 2.7 LysR family transcriptional regulator compare
HSERO_RS21375 +1.4 3.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS11460 +1.3 1.9 universal stress protein compare
HSERO_RS08035 +1.3 2.7 GCN5 family N-acetyltransferase compare
HSERO_RS15070 +1.3 1.4 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS10910 +1.1 4.2 peptidase compare
HSERO_RS03915 +1.1 2.1 hypothetical protein compare
HSERO_RS19995 +1.1 1.6 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS00450 +1.1 5.0 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS08150 +1.1 6.0 phasin family protein compare
HSERO_RS03350 +1.1 3.1 hypothetical protein compare
HSERO_RS20985 +1.0 1.5 serine acetyltransferase compare
HSERO_RS19090 +1.0 2.9 C4-dicarboxylate ABC transporter compare
HSERO_RS07275 +1.0 3.7 D-amino acid dehydrogenase compare
HSERO_RS05745 +1.0 5.9 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS09420 +1.0 3.9 HAD family hydrolase compare
HSERO_RS16835 +1.0 5.5 phosphatidylglycerophosphatase compare
HSERO_RS21035 +1.0 3.6 hypothetical protein compare
HSERO_RS06530 +0.9 1.6 muconolactone delta-isomerase compare
HSERO_RS17855 +0.9 2.7 DEAD/DEAH box helicase compare
HSERO_RS11465 +0.9 2.6 sodium:proton antiporter compare
HSERO_RS09875 +0.9 2.1 hypothetical protein compare
HSERO_RS07255 +0.9 2.1 glutaminase compare
HSERO_RS08990 +0.9 3.2 heat shock protein 90 compare
HSERO_RS22465 +0.9 6.0 sugar ABC transporter compare
HSERO_RS12215 +0.9 1.7 alpha/beta hydrolase superfamily protein compare
HSERO_RS02545 +0.9 1.8 membrane protein compare
HSERO_RS15055 +0.8 2.4 membrane protein compare
HSERO_RS02215 +0.8 0.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS15205 +0.8 1.2 LysR family transcriptional regulator compare
HSERO_RS03420 +0.8 1.6 cytochrome B561 compare
HSERO_RS10600 +0.8 5.8 diguanylate phosphodiesterase compare
HSERO_RS07240 +0.8 2.1 membrane protein compare
HSERO_RS14760 +0.8 4.1 membrane protein compare
HSERO_RS05215 +0.8 6.3 LysR family transcriptional regulator compare
HSERO_RS05440 +0.8 1.2 hypothetical protein compare
HSERO_RS23885 +0.8 3.8 XRE family transcriptional regulator compare
HSERO_RS21005 +0.8 4.7 asparagine synthase compare
HSERO_RS22455 +0.8 6.3 AraC family transcriptional regulator compare
HSERO_RS20080 +0.8 2.3 hypothetical protein compare
HSERO_RS14395 +0.7 1.2 oxygen-binding protein compare
HSERO_RS08725 +0.7 1.5 transcriptional regulator compare
HSERO_RS20625 +0.7 0.7 phenylacetate-CoA oxygenase compare
HSERO_RS07155 +0.7 3.4 peptidase C69 compare
HSERO_RS04135 +0.7 1.8 amidohydrolase compare
HSERO_RS10945 +0.7 2.1 ribonuclease HII compare
HSERO_RS07290 +0.7 2.7 oligopeptidase A compare
HSERO_RS04525 +0.7 2.5 lysozyme compare
HSERO_RS04860 +0.7 1.0 sugar ABC transporter permease compare
HSERO_RS18860 +0.7 2.3 potassium-transporting ATPase subunit C compare
HSERO_RS06420 +0.7 1.3 hypothetical protein compare
HSERO_RS02580 +0.7 2.4 hypothetical protein compare
HSERO_RS13460 +0.7 1.1 malonate decarboxylase subunit delta compare
HSERO_RS04335 +0.7 2.1 sodium:proton antiporter compare
HSERO_RS02810 +0.7 3.3 methyltransferase compare
HSERO_RS15095 +0.7 1.7 AraC family transcriptional regulator compare
HSERO_RS15875 +0.7 2.0 zinc ABC transporter permease compare
HSERO_RS16685 +0.7 1.8 lactate dehydrogenase compare
HSERO_RS02770 +0.7 1.8 hypothetical protein compare
HSERO_RS09560 +0.7 2.9 MarR family transcriptional regulator compare
HSERO_RS00270 +0.7 1.4 hypothetical protein compare
HSERO_RS08975 +0.7 1.6 membrane protein compare
HSERO_RS08410 +0.7 1.8 hypothetical protein compare
HSERO_RS09650 +0.6 1.5 elongation factor 4 compare
HSERO_RS19365 +0.6 3.0 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data) compare
HSERO_RS06005 +0.6 2.3 hypothetical protein compare
HSERO_RS22725 +0.6 2.3 transcriptional regulator compare
HSERO_RS02700 +0.6 1.3 hypothetical protein compare
HSERO_RS22040 +0.6 1.9 CDP-glucose 4,6-dehydratase compare
HSERO_RS03840 +0.6 2.0 hypothetical protein compare
HSERO_RS15480 +0.6 3.1 transcriptional regulator compare
HSERO_RS15860 +0.6 3.4 LysR family transcriptional regulator compare
HSERO_RS09830 +0.6 2.3 membrane protein compare
HSERO_RS03145 +0.6 3.2 poly(A) polymerase compare
HSERO_RS10675 +0.6 3.6 diguanylate cyclase compare
HSERO_RS17720 +0.6 3.5 aminopeptidase N compare
HSERO_RS04340 +0.6 3.0 gamma-glutamyl ligase compare
HSERO_RS21525 +0.6 1.3 alpha/beta hydrolase compare
HSERO_RS18470 +0.6 0.8 acyltransferase compare
HSERO_RS12630 +0.6 2.1 chemotaxis protein CheY compare
HSERO_RS21025 +0.6 3.3 hypothetical protein compare
HSERO_RS15495 +0.6 1.7 ABC transporter permease compare
HSERO_RS21635 +0.6 1.9 DNA-directed DNA polymerase compare
HSERO_RS15865 +0.6 1.4 antibiotic biosynthesis monooxygenase compare
HSERO_RS20980 +0.6 3.3 oxidoreductase compare
HSERO_RS16485 +0.6 2.8 tRNA pseudouridine synthase A compare
HSERO_RS03595 +0.6 2.0 cation transporter compare
HSERO_RS02930 +0.6 2.0 cupin compare
HSERO_RS11845 +0.6 2.1 hypothetical protein compare
HSERO_RS07730 +0.6 2.9 ferredoxin-NADP reductase compare
HSERO_RS05560 +0.6 2.3 ABC transporter substrate-binding protein compare
HSERO_RS13610 +0.6 2.0 S-formylglutathione hydrolase compare
HSERO_RS09250 +0.6 2.1 hypothetical protein compare
HSERO_RS11480 +0.6 2.6 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
HSERO_RS22730 +0.6 3.5 sugar ABC transporter substrate-binding protein compare
HSERO_RS02450 +0.6 1.2 arsenate reductase compare
HSERO_RS18205 +0.6 1.7 hypothetical protein compare
HSERO_RS06630 +0.6 2.5 alpha/beta hydrolase compare
HSERO_RS07225 +0.5 2.3 DNA-3-methyladenine glycosylase compare
HSERO_RS02015 +0.5 2.3 peptidase M23 compare
HSERO_RS06170 +0.5 0.9 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS14765 +0.5 1.6 membrane protein compare
HSERO_RS22935 +0.5 1.5 metallothio multi-domain protein compare
HSERO_RS18010 +0.5 0.6 pseudouridine synthase compare
HSERO_RS09265 +0.5 2.9 peptidase C69 compare
HSERO_RS20260 +0.5 1.0 2-alkenal reductase compare
HSERO_RS03995 +0.5 1.3 hypothetical protein compare
HSERO_RS01825 +0.5 1.4 RNA pyrophosphohydrolase compare
HSERO_RS16365 +0.5 2.6 hypothetical protein compare
HSERO_RS06255 +0.5 1.6 transcriptional regulator compare
HSERO_RS18510 +0.5 1.5 thioesterase compare
HSERO_RS22480 +0.5 3.5 dihydroxy-acid dehydratase compare
HSERO_RS16825 +0.5 0.5 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS22720 +0.5 3.3 histidine kinase compare
HSERO_RS04060 +0.5 1.3 type II secretion system protein F compare
HSERO_RS18775 +0.5 2.0 phage killer protein compare
HSERO_RS19005 +0.5 1.7 glutathione peroxidase compare
HSERO_RS20405 +0.5 2.3 GTP-binding protein YchF compare
HSERO_RS02780 +0.5 1.4 hypothetical protein compare
HSERO_RS21150 +0.5 1.4 aldolase compare
HSERO_RS23455 +0.5 1.0 methylcrotonoyl-CoA carboxylase compare
HSERO_RS22470 +0.5 3.1 D-xylose ABC transporter permease compare
HSERO_RS02610 +0.5 1.0 hypothetical protein compare
HSERO_RS09520 +0.5 1.1 alanyl-tRNA synthetase compare
HSERO_RS05815 +0.5 1.6 osmotically inducible protein C compare
HSERO_RS22735 +0.5 2.3 sugar ABC transporter substrate-binding protein compare
HSERO_RS21735 +0.5 1.8 hypothetical protein compare
HSERO_RS16295 +0.5 3.3 LysR family transcriptional regulator compare
HSERO_RS20900 +0.5 2.4 type IV pilus biogenesis protein compare
HSERO_RS02760 +0.5 1.2 hypothetical protein compare
HSERO_RS08745 +0.5 1.7 membrane protein compare
HSERO_RS10685 +0.5 1.8 serine endopeptidase compare
HSERO_RS14625 +0.5 2.5 methyl-accepting chemotaxis protein compare
HSERO_RS09435 +0.5 1.1 S-adenosylmethionine-dependent methyltransferase compare
HSERO_RS12770 +0.5 0.9 3-oxoacyl-ACP reductase compare
HSERO_RS21060 +0.5 2.2 hypothetical protein compare
HSERO_RS12300 +0.5 1.7 hypothetical protein compare
HSERO_RS05435 +0.5 3.9 hemolysin protein compare
HSERO_RS06570 +0.5 1.0 endoribonuclease L-PSP compare
HSERO_RS05390 +0.5 1.4 twitching motility protein PilT compare
HSERO_RS11490 +0.5 2.3 D-ribose ABC transporter, permease component RbsC (from data) compare
HSERO_RS21000 +0.5 2.2 aminotransferase DegT compare
HSERO_RS03950 +0.5 2.0 type III secretion HrpQ protein compare
HSERO_RS13395 +0.5 2.1 hydratase compare
HSERO_RS12715 +0.5 1.5 hypothetical protein compare
HSERO_RS17345 +0.5 1.5 AsnC family transcriptional regulator compare
HSERO_RS18770 +0.5 1.3 transcriptional regulator compare
HSERO_RS12585 +0.5 2.3 phosphoserine phosphatase compare
HSERO_RS06270 +0.5 2.3 hemolysin protein compare
HSERO_RS21040 +0.5 2.0 3-oxoacyl-ACP synthase compare
HSERO_RS11450 +0.5 2.3 ABC transporter ATP-binding protein compare
HSERO_RS13065 +0.5 1.5 biopolymer transporter compare
HSERO_RS08320 +0.5 2.3 amino acid ABC transporter substrate-binding protein compare
HSERO_RS04435 +0.5 1.8 oxidoreductase compare
HSERO_RS09745 +0.5 0.6 chemotaxis protein CheY compare
HSERO_RS15015 +0.5 2.7 ATP-binding protein compare
HSERO_RS09445 +0.5 2.0 iron deficiency-induced protein A compare
HSERO_RS12295 +0.5 1.8 histidine kinase compare
HSERO_RS23830 +0.5 2.0 transcriptional regulator compare
HSERO_RS03920 +0.4 1.3 hypothetical protein compare
HSERO_RS06365 +0.4 1.8 hypothetical protein compare
HSERO_RS14075 +0.4 2.7 3-oxoacyl-ACP reductase compare
HSERO_RS11400 +0.4 2.3 exonuclease compare
HSERO_RS16695 +0.4 1.3 hypothetical protein compare
HSERO_RS14270 +0.4 1.9 hypothetical protein compare
HSERO_RS11900 +0.4 2.3 Crp/Fnr family transcriptional regulator compare
HSERO_RS13450 +0.4 1.9 malonate decarboxylase subunit gamma compare
HSERO_RS12945 +0.4 1.4 hypothetical protein compare
HSERO_RS19820 +0.4 2.2 methyl-accepting chemotaxis protein compare
HSERO_RS03190 +0.4 1.2 glutathione S-transferase compare
HSERO_RS10490 +0.4 2.1 gluconate transporter compare
HSERO_RS15065 +0.4 1.2 laccase compare
HSERO_RS12725 +0.4 2.6 GTP cyclohydrolase compare
HSERO_RS19520 +0.4 1.0 hypothetical protein compare
HSERO_RS07860 +0.4 2.2 LysR family transcriptional regulator compare
HSERO_RS14620 +0.4 1.7 chemotaxis protein compare
HSERO_RS13335 +0.4 0.6 hypothetical protein compare
HSERO_RS08790 +0.4 0.5 hypothetical protein compare
HSERO_RS18750 +0.4 1.8 dehydrogenase compare
HSERO_RS11825 +0.4 1.7 hypothetical protein compare
HSERO_RS16275 +0.4 0.8 5-hydroxyisourate hydrolase compare
HSERO_RS05265 +0.4 1.8 L-fucono-1,5-lactonase (from data) compare
HSERO_RS07265 +0.4 3.2 aspartyl/asparaginyl beta-hydroxylase AspH compare
HSERO_RS20775 +0.4 0.8 membrane protein compare
HSERO_RS01605 +0.4 2.2 amino acid dehydrogenase compare
HSERO_RS05810 +0.4 1.0 sulfurtransferase compare
HSERO_RS15525 +0.4 2.0 hypothetical protein compare
HSERO_RS13720 +0.4 2.0 hypothetical protein compare
HSERO_RS09910 +0.4 0.8 integration host factor subunit alpha compare
HSERO_RS09985 +0.4 2.2 Atrophin-1 multi-domain protein compare
HSERO_RS18955 +0.4 2.2 glycerol-3-phosphate ABC transporter substrate-binding protein compare
HSERO_RS03035 +0.4 1.3 small protein A compare
HSERO_RS14770 +0.4 2.1 GTP-binding protein HflX compare
HSERO_RS06335 +0.4 1.2 chemotaxis protein CheY compare
HSERO_RS15945 +0.4 2.0 peptide ABC transporter permease compare
HSERO_RS02785 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen fixation control D-Glucose in Herbaspirillum seropedicae SmR1

For nitrogen fixation control D-Glucose across organisms