Experiment set7IT024 for Rhodanobacter denitrificans FW104-10B01
Anaerobic, acetate donor; nitrate and iron electron acceptors
Group: anaerobicMedia: Hans_Basal_Media_bicarb_nitrate + Potassium acetate (5 mM) + Iron (II) chloride tetrahydrate (10 mM mM), pH=7
Culturing: rhodanobacter_10B01_ML12, tube, Anaerobic, at 30 (C)
By: Hans Carlson on 09/22/2021
Media components: 2.5 g/L Sodium bicarbonate, 0.1 g/L Potassium Chloride, 0.01 g/L Sodium Chloride, 0.01 g/L Calcium chloride dihydrate, 0.1 g/L Magnesium chloride hexahydrate, 0.1 g/L Sodium sulfate, 0.25 g/L Ammonium chloride, 0.1 g/L Disodium phosphate, 10 mM Sodium nitrate, DL vitamins (0.0002 mg/L biotin, 0.0002 mg/L Folic Acid, 0.001 mg/L Pyridoxine HCl, 0.0005 mg/L Riboflavin, 0.0005 mg/L Thiamine HCl, 0.0005 mg/L Nicotinic Acid, 0.0005 mg/L calcium pantothenate, 1e-05 mg/L Cyanocobalamin, 0.0005 mg/L 4-Aminobenzoic acid, 0.0005 mg/L Lipoic acid), Sulfur-free DL minerals (0.0003 g/L Magnesium chloride hexahydrate, 0.00015 g/L Nitrilotriacetic acid disodium salt, 0.0001 g/L Sodium Chloride, 5e-05 g/L Manganese (II) chloride tetrahydrate, 1e-05 g/L Cobalt chloride hexahydrate, 1.3e-05 g/L Zinc chloride, 1e-05 g/L Calcium chloride dihydrate, 1e-05 g/L Iron (II) chloride tetrahydrate, 2.5e-06 g/L Nickel (II) chloride hexahydrate, 2e-06 g/L Aluminum chloride hydrate, 1e-06 g/L copper (II) chloride dihydrate, 1e-06 g/L Boric Acid, 1e-06 g/L Sodium Molybdate Dihydrate, 3e-05 g/L Sodium selenite pentahydrate, 2.5e-05 g/L Sodium tungstate dihydrate)
Specific Phenotypes
For 52 genes in this experiment
For anaerobic Potassium acetate in Rhodanobacter denitrificans FW104-10B01
For anaerobic Potassium acetate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Oxidative phosphorylation
- Puromycin biosynthesis
- Methionine metabolism
- Tryptophan metabolism
- Nucleotide sugars metabolism
- Pyruvate metabolism
- Reductive carboxylate cycle (CO2 fixation)
- Nitrogen metabolism
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
- Glycolysis / Gluconeogenesis
- Ascorbate and aldarate metabolism
- Histidine metabolism
- Tyrosine metabolism
- Phenylalanine metabolism
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Benzoxazinone biosynthesis
- Glycosaminoglycan degradation
- Lipopolysaccharide biosynthesis
- alpha-Linolenic acid metabolism
- Naphthalene and anthracene degradation
- Glyoxylate and dicarboxylate metabolism
- Trinitrotoluene degradation
- Propanoate metabolism
- Riboflavin metabolism
- Terpenoid biosynthesis
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: