Experiment set7IT024 for Sinorhizobium meliloti 1021

Compare to:

Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

200 most important genes:

  gene name fitness t score description  
SMc02572 -7.1 -4.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc02137 -7.0 -4.5 ornithine carbamoyltransferase compare
SM_b21174 -6.7 -4.0 phosphate uptake ABC transporter permease compare
SMc00711 -6.2 -4.0 cyclohexadienyl dehydrogenase compare
SMc00917 -5.8 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SM_b21175 -5.4 -5.0 phosphate uptake ABC transporter permease compare
SMc02863 -5.4 -4.9 recombination protein F compare
SMc01054 -5.3 -4.4 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01801 -5.1 -3.0 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02245 -5.0 -4.3 dihydroorotate dehydrogenase 2 compare
SMc02570 -5.0 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00131 -4.9 -12.9 transcriptional regulator compare
SMc00235 -4.8 -8.0 anthranilate phosphoribosyltransferase compare
SMc04405 -4.7 -10.2 3-isopropylmalate dehydrogenase compare
SMc04045 -4.7 -7.9 dihydroxy-acid dehydratase compare
SMc02899 -4.7 -13.8 prephenate dehydratase compare
SMc01431 -4.7 -16.5 acetolactate synthase 3 catalytic subunit compare
SMc00614 -4.6 -7.8 phosphoribosylglycinamide formyltransferase compare
SMc04026 -4.5 -8.8 glutamate synthase compare
SMc00494 -4.5 -1.8 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc04028 -4.5 -20.7 glutamate synthase compare
SMc00090 -4.5 -12.2 sulfate adenylyltransferase compare
SMc00412 -4.5 -3.1 orotidine 5'-phosphate decarboxylase compare
SMc02124 -4.4 -15.6 nitrite reductase compare
SMc03895 -4.4 -18.5 pyruvate carboxylase compare
SMc02635 -4.4 -8.3 DNA repair protein RecO compare
SMc01843 -4.4 -11.7 5,10-methylenetetrahydrofolate reductase compare
SM_b21176 -4.4 -6.0 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02574 -4.4 -7.5 imidazoleglycerol-phosphate dehydratase compare
SMc00236 -4.3 -6.4 Indole-3-glycerol phosphate synthase compare
SMc01004 -4.3 -14.3 phosphoribosyl-AMP cyclohydrolase compare
SMc01494 -4.3 -10.5 phosphoserine phosphatase compare
SMc00293 -4.3 -14.4 homoserine dehydrogenase compare
SMc02307 -4.3 -8.1 histidinol dehydrogenase compare
SMc03797 -4.2 -11.3 homoserine O-succinyltransferase compare
SMc02766 -4.2 -17.3 tryptophan synthase subunit beta compare
SMc02850 -4.2 -2.9 DNA polymerase I compare
SMc00615 -4.2 -10.1 phosphoribosylaminoimidazole synthetase compare
SMc02569 -4.1 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
SMc04346 -4.1 -7.8 ketol-acid reductoisomerase compare
SMc02707 -4.1 -4.4 hypothetical protein compare
SMc00488 -4.1 -16.5 phosphoribosylformylglycinamidine synthase II compare
SMc03070 -4.1 -8.2 glucose-6-phosphate 1-dehydrogenase compare
SMc02077 -4.1 -3.4 exodeoxyribonuclease III protein compare
SM_b21177 -4.1 -8.0 phosphate uptake ABC transporter ATP-binding protein compare
SMc00993 -3.9 -10.7 phosphoribosylamine--glycine ligase compare
SMc02717 -3.9 -17.1 2-isopropylmalate synthase compare
SMc02767 -3.9 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00554 -3.9 -9.1 amidophosphoribosyltransferase compare
SMc02908 -3.9 -5.9 recombination protein RecR compare
SMc00228 -3.9 -13.5 ATP-dependent DNA helicase RecG compare
SMc00017 -3.9 -1.6 homoserine kinase compare
SMc00495 -3.9 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc04088 -3.8 -9.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02725 -3.8 -14.1 anthranilate synthase compare
SMc00493 -3.8 -7.2 phosphoribosylformylglycinamidine synthase I compare
SMc00918 -3.8 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
SMc01726 -3.8 -6.8 acetylglutamate kinase compare
SMc02765 -3.8 -13.4 tryptophan synthase subunit alpha compare
SMc01235 -3.7 -11.1 excinuclease ABC subunit A compare
SMc00092 -3.7 -11.6 phosphoadenosine phosphosulfate reductase compare
SMc03823 -3.6 -12.0 isopropylmalate isomerase large subunit compare
SMc03979 -3.6 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00602 -3.6 -4.9 excinuclease ABC subunit C compare
SMc00640 -3.6 -9.0 phosphoserine aminotransferase compare
SMc00641 -3.6 -7.7 D-3-phosphoglycerate dehydrogenase compare
SMc00024 -3.5 -5.3 chromosome partition protein compare
SMc02217 -3.5 -8.2 O-succinylhomoserine sulfhydrylase compare
SMc03777 -3.5 -7.7 gamma-glutamyl phosphate reductase compare
SMc03112 -3.5 -14.2 B12-dependent methionine synthase compare
SMc00334 -3.5 -1.7 cytidylate kinase compare
SMc01770 -3.4 -1.7 serine hydroxymethyltransferase compare
SMc02138 -3.4 -6.8 acetylornithine transaminase compare
SMc03790 -3.3 -6.7 hypothetical protein compare
SMc00914 -3.3 -5.5 oxidoreductase compare
SMc02166 -3.3 -9.6 dihydroorotase compare
SMc00691 -3.2 -3.7 site-specific tyrosine recombinase XerD compare
SMc02833 -3.2 -1.8 penicillin-insensitive murein endopeptidase compare
SMc03788 -3.2 -16.8 DNA polymerase III subunit alpha compare
SMc01842 -3.2 -4.0 methyltransferase transcription regulator protein compare
SMc00091 -3.2 -10.5 sulfate adenylyltransferase compare
SMc03229 -3.2 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00815 -3.1 -1.9 inosine 5'-monophosphate dehydrogenase compare
SMc01053 -3.1 -5.7 siroheme synthase compare
SMc01880 -3.1 -2.1 pantoate--beta-alanine ligase compare
SMc00760 -3.0 -5.7 recombinase A compare
SMc03789 -3.0 -6.2 hypothetical protein compare
SMc02115 -3.0 -0.9 hypothetical protein compare
SMa1635 -3.0 -2.4 hypothetical protein compare
SMc02123 -3.0 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02561 -3.0 -2.9 hypothetical protein compare
SMc03068 -2.9 -8.7 phosphogluconate dehydratase compare
SMc03069 -2.9 -2.6 6-phosphogluconolactonase compare
SMc02425 -2.9 -3.3 transcriptional regulator compare
SMc02755 -2.9 -5.5 S-adenosyl-L-homocysteine hydrolase compare
SMc00712 -2.8 -2.2 hypothetical protein compare
SMc01877 -2.8 -5.3 DNA repair protein compare
SM_b20902 -2.8 -11.1 sugar uptake ABC transporter substrate-binding protein precursor compare
SMc02165 -2.8 -7.3 orotate phosphoribosyltransferase compare
SMc02070 -2.8 -8.1 hypothetical protein compare
SM_b20903 -2.8 -8.4 sugar uptake ABC transporter permease compare
SMc02069 -2.7 -4.3 hypothetical protein compare
SMc02052 -2.7 -1.3 hypothetical protein compare
SMc02140 -2.6 -1.1 phosphate regulon transcriptional regulatory protein compare
SMa2253 -2.6 -1.7 hypothetical protein compare
SMc04296 -2.5 -1.0 cell division protein FtsZ compare
SMc00556 -2.5 -4.1 DNA repair protein RadA compare
SMc03924 -2.5 -9.4 glycogen synthase compare
SMc04002 -2.4 -4.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc04001 -2.4 -1.4 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00414 -2.4 -9.3 hypothetical protein compare
SMc01360 -2.3 -1.5 aspartate carbamoyltransferase catalytic subunit compare
SMc02058 -2.3 -3.1 YAJC protein compare
SMa0211 -2.3 -1.6 hypothetical protein compare
SM_b20746 -2.2 -1.1 hypothetical protein compare
SM_b20904 -2.2 -2.6 sugar uptake ABC transporter ATP-binding protein compare
SMc01183 -2.2 -0.8 LexA repressor compare
SMc03978 -2.2 -2.1 transketolase compare
SMc04231 -2.2 -5.6 excinuclease ABC subunit B compare
SMc03981 -2.2 -3.0 phosphoglycerate kinase compare
SMc02835 -2.1 -5.6 glucokinase compare
SMc03046 -2.1 -5.5 transcriptional regulator compare
SMc03967 -2.0 -0.9 Holliday junction resolvase compare
SMc02246 -2.0 -0.6 hypothetical protein compare
SM_b20294 -2.0 -1.2 transcriptional regulator NanR compare
SM_b21485 -2.0 -3.9 hypothetical protein compare
SMc04243 -2.0 -7.4 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc03795 -2.0 -1.4 isopropylmalate isomerase small subunit compare
SMc01440 -2.0 -5.1 hydrolase serine protease transmembrane protein compare
SMc02141 -1.9 -2.2 phosphate transporter PhoU compare
SMc01461 -1.8 -4.3 DNA helicase II protein compare
SMc03850 -1.8 -0.7 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02631 -1.8 -1.4 hypothetical protein compare
SMc02144 -1.8 -2.6 phosphate ABC transporter permease compare
SMc00189 -1.7 -4.7 cytochrome C1 protein compare
SM_b20307 -1.7 -1.1 dihydroxyacetone kinase compare
SMc04005 -1.7 -4.3 pyruvate kinase compare
SMc01028 -1.7 -10.4 phosphopyruvate hydratase compare
SMc00492 -1.7 -0.8 hypothetical protein compare
SMc00353 -1.7 -2.0 transmembrane protein compare
SMc04454 -1.7 -3.9 ABC transporter ATP-binding protein compare
SMc03776 -1.7 -3.2 gamma-glutamyl kinase compare
SM_b20026 -1.7 -2.0 hypothetical protein compare
SMc01568 -1.6 -1.5 hypothetical protein compare
SMc00987 -1.6 -1.7 hypothetical protein compare
SMc01361 -1.6 -2.4 dihydroorotase compare
SMc00053 -1.6 -0.8 monovalent cation/H+ antiporter subunit C compare
SMc02145 -1.6 -0.6 signal peptide protein compare
SMc01929 -1.6 -2.5 hypothetical protein compare
SMc01089 -1.5 -1.4 hypothetical protein compare
SMc01124 -1.5 -4.6 PII uridylyl-transferase compare
SMc00378 -1.5 -1.9 exodeoxyribonuclease VII large subunit compare
SMc01119 -1.5 -1.9 hypothetical protein compare
SMc03049 -1.5 -7.6 flagellar hook-associated protein FlgL compare
SMc01441 -1.5 -4.8 membrane bound protease compare
SMc04244 -1.5 -5.4 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc01569 -1.5 -0.6 carbamoyl phosphate synthase small subunit compare
SMc01259 -1.5 -2.8 hypothetical protein compare
SMc01578 -1.5 -6.7 aspartate aminotransferase compare
SMc04245 -1.5 -7.2 high-affinity zinc uptake system ABC transporter protein compare
SMc03051 -1.5 -1.9 flagellar biosynthesis repressor FlbT compare
SMc02147 -1.4 -3.8 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc03763 -1.4 -1.3 cytosine-specific methyltransferase compare
SMc04450 -1.4 -9.0 transcription-repair coupling factor compare
SMc02714 -1.4 -1.3 hypothetical protein compare
SMc00970 -1.3 -2.0 exodeoxyribonuclease VII small subunit compare
SM_b20822 -1.3 -4.7 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc02983 -1.3 -3.4 ornithine, DAP, or arginine decarboxylase compare
SMc00450 -1.3 -1.2 protoheme IX farnesyltransferase compare
SM_b20750 -1.3 -1.6 dehydrogenase compare
SMc01368 -1.3 -3.3 transport transmembrane protein compare
SMc01337 -1.3 -1.1 hypothetical protein compare
SMc00974 -1.3 -2.3 RNA methyltransferase compare
SMc00720 -1.3 -3.0 2-component receiver domain-containing protein compare
SMc04453 -1.3 -1.2 hypothetical protein compare
SMc01208 -1.3 -1.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc01881 -1.3 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMa1658 -1.2 -2.0 hypothetical protein compare
SMc01978 -1.2 -4.7 sugar transport system permease ABC transporter protein compare
SMc03249 -1.2 -1.8 hypothetical protein compare
SMc03242 -1.2 -1.9 GTP-binding protein compare
SMc02142 -1.2 -2.2 phosphate transporter ATP-binding protein compare
SM_b21132 -1.2 -2.6 sulfate ABC transporter permease compare
SMc01595 -1.2 -2.6 sensor histidine kinase transmembrane protein compare
SMc00775 -1.2 -6.9 iron(III) permease compare
SMc00295 -1.1 -0.9 hypothetical protein compare
SMc02515 -1.1 -3.0 hypothetical protein compare
SMc02520 -1.1 -3.7 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc00784 -1.1 -6.6 iron binding protein compare
SMc02068 -1.1 -5.4 ABC transporter ATP-binding protein compare
SMc03090 -1.1 -2.2 chemotaxis protein compare
SMc01206 -1.1 -1.2 queuine tRNA-ribosyltransferase compare
SM_b21395 -1.1 -1.7 hypothetical protein compare
SMc04330 -1.1 -1.5 trimethylamine methyltransferase compare
SMc03047 -1.1 -5.8 flagellar hook protein FlgE compare
SMc02909 -1.1 -1.3 transglycosylase transmembrane protein compare
SMa0995 -1.1 -2.1 TRm5 transposase compare
SM_b21270 -1.0 -1.6 transcriptional regulator compare
SMc02979 -1.0 -2.8 hypothetical protein compare
SMc00876 -1.0 -3.8 ATP-binding MRP protein compare


Specific Phenotypes

For 11 genes in this experiment

For in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct in Sinorhizobium meliloti 1021

For in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct across organisms