Experiment set7IT024 for Methanococcus maripaludis S2

Compare to:

Iron limitation, H2 media

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -4.6 -7.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06120 -3.7 -4.0 UPF0147 family protein compare
MMP_RS06730 -3.7 -3.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS05515 -3.7 -8.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03015 -3.5 -14.8 GTP 3' 8-cyclase MoaA compare
MMP_RS05550 -3.5 -1.3 cation:proton antiporter compare
MMP_RS06355 -3.2 -5.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01500 -3.1 -4.1 CBS domain-containing protein compare
MMP_RS08635 -3.0 -3.7 UbiA family prenyltransferase compare
MMP_RS03110 -3.0 -8.7 glycosyltransferase family 2 protein compare
MMP_RS02010 -2.9 -12.7 PHP domain-containing protein compare
MMP_RS03315 -2.8 -2.4 ferrous iron transport protein A compare
MMP_RS02145 -2.8 -13.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS07635 -2.8 -10.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04780 -2.7 -4.9 ribonuclease P compare
MMP_RS06350 -2.7 -8.1 HesA/MoeB/ThiF family protein compare
MMP_RS06370 -2.7 -8.4 biotin synthase BioB compare
MMP_RS01265 -2.7 -5.7 hypothetical protein compare
MMP_RS05845 -2.6 -3.4 tRNA-intron lyase compare
MMP_RS08720 -2.6 -3.0 4Fe-4S binding protein compare
MMP_RS08300 -2.5 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS03475 -2.5 -1.3 hypothetical protein compare
MMP_RS01545 -2.5 -1.8 CBS domain-containing protein compare
MMP_RS01225 -2.5 -8.5 DUF5379 domain-containing protein compare
MMP_RS07390 -2.4 -4.1 cell division protein FtsZ compare
MMP_RS04500 -2.4 -16.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01005 -2.4 -2.5 riboflavin synthase compare
MMP_RS08745 -2.4 -7.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08650 -2.4 -4.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08790 -2.3 -3.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS02195 -2.2 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06110 -2.2 -4.7 ATP-dependent protease LonB compare
MMP_RS06400 -2.2 -2.5 4Fe-4S binding protein compare
MMP_RS02240 -2.2 -3.9 methanogenesis marker 7 protein compare
MMP_RS02280 -2.2 -1.5 DUF211 domain-containing protein compare
MMP_RS08100 -2.2 -9.0 8-amino-7-oxononanoate synthase compare
MMP_RS00040 -2.1 -5.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01020 -2.1 -1.8 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05250 -2.0 -2.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS04710 -2.0 -2.9 hypothetical protein compare
MMP_RS06295 -2.0 -9.0 methanogenesis marker 14 protein compare
MMP_RS07005 -2.0 -1.0 4Fe-4S binding protein compare
MMP_RS03600 -2.0 -3.0 triose-phosphate isomerase compare
MMP_RS03700 -2.0 -8.0 sodium:proton antiporter compare
MMP_RS08105 -2.0 -8.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS01880 -2.0 -9.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08435 -1.9 -4.0 Era-like GTP-binding protein compare
MMP_RS03205 -1.9 -2.5 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS04605 -1.9 -4.3 cobalt ECF transporter T component CbiQ compare
MMP_RS07380 -1.9 -3.3 transcription elongation factor Spt5 compare
MMP_RS01610 -1.9 -4.6 hypothetical protein compare
MMP_RS07755 -1.9 -2.0 DUF555 domain-containing protein compare
MMP_RS06840 -1.9 -1.5 DNA-directed RNA polymerase subunit N compare
MMP_RS05555 -1.8 -2.4 DUF4040 domain-containing protein compare
MMP_RS08095 -1.8 -7.8 dethiobiotin synthase compare
MMP_RS01725 -1.8 -4.5 class I SAM-dependent methyltransferase family protein compare
MMP_RS01885 -1.8 -10.6 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS00300 -1.8 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS08715 -1.8 -2.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07735 -1.8 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01925 -1.8 -9.7 DUF1616 domain-containing protein compare
MMP_RS01755 -1.7 -2.2 DUF2097 domain-containing protein compare
MMP_RS01385 -1.7 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01900 -1.7 -12.7 hypothetical protein compare
MMP_RS04775 -1.7 -4.4 adenosylhomocysteinase compare
MMP_RS03435 -1.7 -2.1 ketol-acid reductoisomerase compare
MMP_RS01380 -1.7 -4.5 PHP domain-containing protein compare
MMP_RS00695 -1.7 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS00895 -1.7 -5.3 hypothetical protein compare
MMP_RS03400 -1.7 -4.1 archease compare
MMP_RS00110 -1.7 -4.1 hypothetical protein compare
MMP_RS08210 -1.7 -3.6 phosphatidylglycerophosphatase A compare
MMP_RS01800 -1.7 -4.6 TIGR00303 family protein compare
MMP_RS07200 -1.7 -6.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03640 -1.7 -4.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03025 -1.7 -4.4 molybdenum cofactor guanylyltransferase compare
MMP_RS08460 -1.7 -3.0 proteasome-activating nucleotidase compare
MMP_RS04890 -1.6 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03580 -1.6 -3.7 signal recognition particle-docking protein FtsY compare
MMP_RS02900 -1.6 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07605 -1.6 -5.3 diadenylate cyclase compare
MMP_RS07525 -1.6 -7.8 4Fe-4S binding protein compare
MMP_RS08820 -1.6 -7.5 hypothetical protein compare
MMP_RS06475 -1.6 -4.1 FAD-dependent oxidoreductase compare
MMP_RS06895 -1.6 -2.4 selenocysteine-specific translation elongation factor compare
MMP_RS01875 -1.6 -9.7 N-acetyltransferase compare
MMP_RS07645 -1.6 -7.5 aldehyde dehydrogenase family protein compare
MMP_RS09020 -1.5 -2.0 hypothetical protein compare
MMP_RS01220 -1.5 -7.0 hypothetical protein compare
MMP_RS06285 -1.5 -3.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07955 -1.5 -5.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS01795 -1.5 -1.3 methanogenesis marker 6 protein compare
MMP_RS03485 -1.5 -4.4 TIGR00267 family protein compare
MMP_RS01955 -1.5 -4.1 hypothetical protein compare
MMP_RS04720 -1.5 -3.2 DedA family protein compare
MMP_RS08195 -1.5 -9.0 hypothetical protein compare
MMP_RS06625 -1.4 -2.2 DNA primase compare
MMP_RS00515 -1.4 -1.2 DUF655 domain-containing protein compare
MMP_RS07845 -1.4 -2.3 LL-diaminopimelate aminotransferase compare
MMP_RS06725 -1.4 -8.4 hypothetical protein compare
MMP_RS02355 -1.4 -4.2 30S ribosomal protein S27ae compare
MMP_RS07420 -1.4 -5.1 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06395 -1.4 -3.5 ThiF family adenylyltransferase compare
MMP_RS01905 -1.4 -10.5 glycosyltransferase compare
MMP_RS01840 -1.4 -6.8 TIGR00289 family protein compare
MMP_RS04900 -1.4 -11.8 hypothetical protein compare
MMP_RS01890 -1.4 -5.5 nucleotide sugar dehydrogenase compare
MMP_RS07195 -1.4 -6.6 M20 family metallo-hydrolase compare
MMP_RS01830 -1.4 -1.6 tRNA-Val compare
MMP_RS04955 -1.4 -5.3 DNA topoisomerase I compare
MMP_RS02800 -1.4 -9.2 nucleotidyltransferase domain-containing protein compare
MMP_RS00985 -1.3 -4.4 CDC48 family AAA ATPase compare
MMP_RS03035 -1.3 -3.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07630 -1.3 -1.9 ATP-binding cassette domain-containing protein compare
MMP_RS07730 -1.3 -1.9 pyruvate synthase subunit beta compare
MMP_RS03445 -1.3 -1.2 methanogenesis marker 17 protein compare
MMP_RS00305 -1.3 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS07600 -1.3 -3.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02245 -1.3 -4.5 hypothetical protein compare
MMP_RS01240 -1.3 -1.4 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07365 -1.3 -8.8 2-phosphoglycerate kinase compare
MMP_RS06270 -1.3 -4.8 TIGR00300 family protein compare
MMP_RS01365 -1.3 -3.8 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01895 -1.3 -9.2 flippase compare
MMP_RS07090 -1.2 -5.9 tRNA (adenine-N1)-methyltransferase compare
MMP_RS00720 -1.2 -6.4 metal-dependent hydrolase compare
MMP_RS02340 -1.2 -1.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS04585 -1.2 -7.1 AIR synthase related protein compare
MMP_RS01975 -1.2 -9.8 hypothetical protein compare
MMP_RS04685 -1.2 -2.5 DUF126 domain-containing protein compare
MMP_RS06900 -1.2 -2.3 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS05280 -1.2 -7.2 COG1361 S-layer family protein compare
MMP_RS00915 -1.2 -5.0 DUF116 domain-containing protein compare
MMP_RS00730 -1.2 -4.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06865 -1.2 -1.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00750 -1.2 -1.6 fumarate hydratase compare
MMP_RS02135 -1.2 -3.7 DUF5612 domain-containing protein compare
MMP_RS00115 -1.2 -8.5 radical SAM protein compare
MMP_RS06105 -1.2 -6.2 hydrogenase maturation peptidase HycI compare
MMP_RS02875 -1.1 -6.4 chorismate pyruvate-lyase family protein compare
MMP_RS06940 -1.1 -3.4 polyprenyl diphosphate synthase compare
MMP_RS07710 -1.1 -5.7 cell division protein FtsZ compare
MMP_RS01910 -1.1 -7.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS00060 -1.1 -1.5 3-dehydroquinate synthase II compare
MMP_RS03095 -1.1 -3.1 diphthine synthase compare
MMP_RS01325 -1.1 -1.6 dihydroneopterin aldolase family protein compare
MMP_RS06130 -1.1 -3.3 peptidylprolyl isomerase compare
MMP_RS06340 -1.1 -4.6 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07330 -1.1 -9.2 membrane protein compare
MMP_RS02345 -1.1 -2.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04485 -1.1 -7.9 putative beta-lysine N-acetyltransferase compare
MMP_RS06630 -1.1 -0.8 UPF0058 family protein compare
MMP_RS00810 -1.1 -5.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03960 -1.1 -1.1 hypothetical protein compare
MMP_RS00735 -1.1 -2.8 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06365 -1.1 -1.3 hypothetical protein compare
MMP_RS04850 -1.1 -8.8 UPF0254 family protein compare
MMP_RS01970 -1.0 -7.8 TIGR04279 domain-containing protein compare
MMP_RS01960 -1.0 -0.8 hypothetical protein compare
MMP_RS05540 -1.0 -3.0 hypothetical protein compare
MMP_RS02175 -1.0 -0.9 DUF1611 domain-containing protein compare
MMP_RS00685 -1.0 -2.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04870 -1.0 -5.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS04615 -1.0 -2.5 PDGLE domain-containing protein compare
MMP_RS06020 -1.0 -3.3 archaeoflavoprotein AfpA compare
MMP_RS05635 -1.0 -7.0 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS05425 -1.0 -3.7 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07750 -1.0 -3.5 DUF357 domain-containing protein compare
MMP_RS01915 -1.0 -7.2 DUF354 domain-containing protein compare
MMP_RS03020 -1.0 -4.0 peptidylprolyl isomerase compare
MMP_RS06670 -0.9 -3.3 glucose-6-phosphate isomerase compare
MMP_RS05815 -0.9 -2.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS05285 -0.9 -7.2 MMPL family transporter compare
MMP_RS06980 -0.9 -4.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS05245 -0.9 -5.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS01600 -0.9 -2.5 50S ribosomal protein L15e compare
MMP_RS03155 -0.9 -4.5 precorrin-6A reductase compare
MMP_RS00520 -0.9 -1.3 RNA polymerase Rpb4 family protein compare
MMP_RS06885 -0.9 -1.7 50S ribosome-binding GTPase compare
MMP_RS06925 -0.9 -2.2 ribonuclease VapC4 compare
MMP_RS08165 -0.9 -1.8 phosphoglycerate dehydrogenase compare
MMP_RS00725 -0.9 -5.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01440 -0.9 -4.5 NAAT family transporter compare
MMP_RS07875 -0.9 -3.7 hypothetical protein compare
MMP_RS03590 -0.9 -3.5 METTL5 family protein compare
MMP_RS05430 -0.9 -3.4 TIGR00288 family NYN domain-containing protein compare
MMP_RS04695 -0.9 -5.4 selenide water dikinase SelD compare
MMP_RS01045 -0.9 -4.2 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS07695 -0.9 -4.7 DUF3236 domain-containing protein compare
MMP_RS01030 -0.9 -2.8 MTAP family purine nucleoside phosphorylase compare
MMP_RS07190 -0.8 -4.1 chromosome segregation protein SMC compare
MMP_RS05535 -0.8 -3.0 hypothetical protein compare
MMP_RS00315 -0.8 -3.1 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07555 -0.8 -0.6 monovalent cation/H+ antiporter subunit E compare
MMP_RS08440 -0.8 -1.7 cell division protein SepF compare
MMP_RS05580 -0.8 -6.8 glycosyltransferase compare
MMP_RS07075 -0.8 -1.9 phosphomannomutase/phosphoglucomutase compare
MMP_RS05850 -0.8 -2.4 Ldh family oxidoreductase compare
MMP_RS08600 -0.8 -1.8 flagellar protein D compare
MMP_RS08690 -0.8 -3.6 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms