Experiment set7IT024 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_18480 -4.8 -17.0 lipid III flippase WzxE compare
IAI47_07480 -4.3 -2.9 hypothetical protein compare
IAI47_00760 -4.0 -5.9 envelope stress response regulator transcription factor CpxR compare
IAI47_12470 -3.9 -17.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_05090 -3.7 -4.4 hypothetical protein compare
IAI47_13685 -3.7 -3.1 Tol-Pal system protein TolB compare
IAI47_17000 -3.6 -14.1 lipoprotein NlpI compare
IAI47_08085 -3.5 -3.4 helix-turn-helix domain-containing protein compare
IAI47_04110 -3.4 -24.5 two-component sensor histidine kinase BarA compare
IAI47_19945 -3.4 -1.1 hypothetical protein compare
IAI47_08700 -3.3 -3.2 RNA chaperone ProQ compare
IAI47_17215 -3.2 -1.5 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13695 -2.9 -1.0 colicin uptake protein TolR compare
IAI47_08705 -2.9 -3.9 carboxy terminal-processing peptidase compare
IAI47_09040 -2.6 -1.9 NAD-dependent epimerase compare
IAI47_00780 -2.5 -3.8 6-phosphofructokinase compare
IAI47_05035 -2.5 -2.4 nucleoside-diphosphate kinase compare
IAI47_11625 -2.5 -3.0 DUF1311 domain-containing protein compare
IAI47_07020 -2.5 -1.6 hypothetical protein compare
IAI47_13690 -2.4 -0.8 cell envelope integrity protein TolA compare
IAI47_15605 -2.3 -2.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_09635 -2.3 -4.4 hypothetical protein compare
IAI47_05070 -2.3 -0.7 outer membrane protein assembly factor BamB compare
IAI47_18495 -2.3 -9.2 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_15485 -2.2 -1.2 molecular chaperone Skp compare
IAI47_12645 -2.2 -4.7 porin OmpA compare
IAI47_01830 -2.2 -11.8 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_14075 -2.2 -2.9 transcription antiterminator/RNA stability regulator CspE compare
IAI47_18490 -2.1 -5.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_13700 -2.1 -3.8 Tol-Pal system protein TolQ compare
IAI47_16420 -2.1 -10.2 LacI family DNA-binding transcriptional regulator compare
IAI47_18470 -2.1 -13.1 ECA oligosaccharide polymerase compare
IAI47_16195 -2.0 -9.7 transaldolase compare
IAI47_10320 -2.0 -0.9 Rrf2 family transcriptional regulator compare
IAI47_09305 -2.0 -3.5 cyclic di-GMP phosphodiesterase compare
IAI47_12305 -2.0 -6.0 hypothetical protein compare
IAI47_04045 -1.9 -10.1 LOG family protein compare
IAI47_04300 -1.9 -5.7 recombinase RecA compare
IAI47_18530 -1.9 -2.7 thioredoxin TrxA compare
IAI47_08440 -1.8 -1.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_04335 -1.8 -3.3 tRNA-Arg compare
IAI47_04800 -1.8 -1.0 RnfH family protein compare
IAI47_17155 -1.8 -7.5 calcium/sodium antiporter compare
IAI47_13625 -1.8 -7.0 CDF family zinc transporter ZitB compare
IAI47_05425 -1.8 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_03680 -1.8 -9.8 transketolase compare
IAI47_06380 -1.8 -1.2 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_04705 -1.8 -1.3 hypothetical protein compare
IAI47_01545 -1.7 -5.8 cell division ATP-binding protein FtsE compare
IAI47_18400 -1.7 -2.0 tyrosine recombinase XerC compare
IAI47_08960 -1.7 -5.9 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_12925 -1.7 -3.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_19935 -1.7 -3.9 hypothetical protein compare
IAI47_11470 -1.7 -3.4 IS1 family transposase compare
IAI47_07025 -1.7 -4.5 glycosyltransferase family 4 protein compare
IAI47_10835 -1.7 -0.8 tRNA-Val compare
IAI47_08165 -1.7 -5.0 flagella biosynthesis regulatory protein FliZ compare
IAI47_17205 -1.7 -1.6 PTS phosphocarrier protein NPr compare
IAI47_06395 -1.7 -1.5 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_19690 -1.7 -1.0 hypothetical protein compare
IAI47_04865 -1.6 -1.8 SoxR-reducing system protein RseC compare
IAI47_03550 -1.6 -9.1 membrane-bound lytic murein transglycosylase MltC compare
IAI47_06370 -1.6 -3.1 NADH-quinone oxidoreductase subunit C/D compare
IAI47_06420 -1.6 -2.6 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_18830 -1.6 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_09235 -1.6 -1.2 type I DNA topoisomerase compare
IAI47_18475 -1.6 -8.8 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_17165 -1.6 -7.7 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_21115 -1.6 -2.5 arsenate reductase (glutaredoxin) compare
IAI47_03590 -1.6 -6.5 YggT family protein compare
IAI47_14470 -1.5 -2.3 YbaB/EbfC family nucleoid-associated protein compare
IAI47_18520 -1.5 -9.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_07515 -1.5 -3.3 hypothetical protein compare
IAI47_13415 -1.5 -9.1 L,D-transpeptidase family protein compare
IAI47_21600 -1.5 -2.4 EamA family transporter compare
IAI47_01000 -1.5 -10.4 HTH-type transcriptional regulator HdfR compare
IAI47_10050 -1.5 -2.2 hypothetical protein compare
IAI47_17005 -1.5 -4.9 polyribonucleotide nucleotidyltransferase compare
IAI47_09525 -1.5 -5.0 serine protease compare
IAI47_15835 -1.5 -8.2 beta-lactamase regulator AmpE compare
IAI47_00940 -1.5 -6.0 HTH-type transcriptional repressor FabR compare
IAI47_11445 -1.4 -4.3 ankyrin repeat domain-containing protein compare
IAI47_20995 -1.4 -2.3 hypothetical protein compare
IAI47_10925 -1.4 -2.1 EAL domain-containing protein compare
IAI47_18765 -1.4 -4.1 damage-inducible protein J compare
IAI47_09580 -1.4 -2.5 FNR family transcription factor compare
IAI47_01475 -1.4 -5.1 MurR/RpiR family transcriptional regulator compare
IAI47_00465 -1.4 -3.1 ribosome-dependent GTPase TypA compare
IAI47_16085 -1.4 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_20595 -1.4 -3.0 GhoT/OrtT family toxin compare
IAI47_01355 -1.4 -4.9 universal stress protein UspA compare
IAI47_12885 -1.4 -6.3 pyruvate formate lyase 1-activating protein compare
IAI47_19890 -1.4 -1.8 hypothetical protein compare
IAI47_05665 -1.3 -3.0 hypothetical protein compare
IAI47_03135 -1.3 -4.9 outer membrane channel protein TolC compare
IAI47_08590 -1.3 -2.3 hypothetical protein compare
IAI47_16995 -1.3 -1.6 protein YrbN compare
IAI47_11420 -1.3 -1.7 hypothetical protein compare
IAI47_13770 -1.3 -6.6 citrate synthase compare
IAI47_12880 -1.3 -9.8 formate C-acetyltransferase compare
IAI47_08450 -1.3 -2.0 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05510 -1.3 -6.0 putative DNA-binding transcriptional regulator compare
IAI47_19940 -1.3 -2.5 hypothetical protein compare
IAI47_11540 -1.3 -2.3 type VI secretion system tip protein VgrG compare
IAI47_11655 -1.3 -1.9 hypothetical protein compare
IAI47_00500 -1.3 -8.1 ATP-dependent DNA helicase RecG compare
IAI47_07030 -1.3 -4.7 HAD family hydrolase compare
IAI47_01530 -1.3 -5.3 DUF1145 family protein compare
IAI47_18465 -1.3 -6.7 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_21595 -1.3 -7.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_18215 -1.3 -1.2 Trk system potassium transporter TrkH compare
IAI47_06405 -1.3 -1.2 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_21765 -1.3 -2.1 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_13155 -1.3 -1.7 H-NS histone family protein compare
IAI47_04805 -1.3 -3.3 outer membrane protein assembly factor BamE compare
IAI47_13195 -1.3 -5.7 DNA starvation/stationary phase protection protein Dps compare
IAI47_10545 -1.2 -2.2 hypothetical protein compare
IAI47_20005 -1.2 -2.7 PTS sugar transporter subunit IIA compare
IAI47_03400 -1.2 -4.5 deoxyribose-phosphate aldolase compare
IAI47_00110 -1.2 -4.4 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_14205 -1.2 -4.3 hypothetical protein compare
IAI47_05155 -1.2 -8.7 polyphosphate kinase 1 compare
IAI47_06655 -1.2 -2.6 1-phosphofructokinase compare
IAI47_18485 -1.2 -6.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_08840 -1.2 -4.6 ribonuclease D compare
IAI47_06675 -1.2 -1.4 DUF1232 domain-containing protein compare
IAI47_17235 -1.2 -7.0 stringent starvation protein A compare
IAI47_09055 -1.2 -7.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_21235 -1.2 -1.4 hypothetical protein compare
IAI47_19960 -1.2 -5.9 lipid IV(A) palmitoyltransferase PagP compare
IAI47_13710 -1.2 -3.2 cyd operon protein YbgE compare
IAI47_18420 -1.1 -7.1 class I adenylate cyclase compare
IAI47_07355 -1.1 -3.9 winged helix-turn-helix domain-containing protein compare
IAI47_16520 -1.1 -6.8 hypothetical protein compare
IAI47_01345 -1.1 -7.8 oligopeptidase A compare
IAI47_07475 -1.1 -0.7 hypothetical protein compare
IAI47_00655 -1.1 -3.4 glycosyltransferase family 4 protein compare
IAI47_08680 -1.1 -4.7 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_17645 -1.1 -3.4 hypothetical protein compare
IAI47_07905 -1.1 -0.5 Arc family DNA-binding protein compare
IAI47_11505 -1.1 -2.9 hypothetical protein compare
IAI47_17420 -1.1 -5.0 DUF3304 domain-containing protein compare
IAI47_01610 -1.1 -3.5 glycerophosphodiester phosphodiesterase compare
IAI47_08065 -1.1 -2.9 acyltransferase compare
IAI47_11360 -1.1 -1.8 hypothetical protein compare
IAI47_06385 -1.1 -2.2 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_13720 -1.1 -2.6 cytochrome d ubiquinol oxidase subunit II compare
IAI47_00675 -1.1 -6.8 glycosyltransferase family 9 protein compare
IAI47_07180 -1.1 -4.1 DUF496 family protein compare
IAI47_21655 -1.1 -0.7 LacI family DNA-binding transcriptional regulator compare
IAI47_10340 -1.1 -3.5 mannose-6-phosphate isomerase compare
IAI47_02255 -1.0 -6.2 DUF1992 domain-containing protein compare
IAI47_11600 -1.0 -2.4 protein of avirulence locus ImpE compare
IAI47_18055 -1.0 -3.3 DNA-binding protein HU-alpha compare
IAI47_14170 -1.0 -2.3 hypothetical protein compare
IAI47_14295 -1.0 -2.2 hypothetical protein compare
IAI47_12175 -1.0 -2.5 anti-sigma-28 factor FlgM compare
IAI47_12370 -1.0 -1.9 acyl carrier protein compare
IAI47_06165 -1.0 -4.2 elongation factor P hydroxylase compare
IAI47_06545 -1.0 -3.1 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_17965 -1.0 -6.5 glucose-6-phosphate isomerase compare
IAI47_09870 -1.0 -3.2 LacI family DNA-binding transcriptional regulator compare
IAI47_11870 -1.0 -2.0 DUF2767 family protein compare
IAI47_11415 -1.0 -0.8 hypothetical protein compare
IAI47_13950 -1.0 -0.9 PhoH family protein compare
IAI47_17900 -1.0 -0.8 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_13545 -1.0 -5.1 6-phosphogluconolactonase compare
IAI47_15150 -1.0 -5.4 DUF3289 family protein compare
IAI47_05420 -1.0 -0.7 PTS glucose transporter subunit IIA compare
IAI47_03375 -1.0 -5.2 peptide chain release factor 3 compare
IAI47_03555 -1.0 -4.9 oxidative damage protection protein compare
IAI47_09730 -1.0 -3.4 DUF1471 domain-containing protein compare
IAI47_02625 -1.0 -6.9 ribonuclease R compare
IAI47_10185 -1.0 -2.5 PTS sugar transporter subunit IIB compare
IAI47_08850 -1.0 -3.1 septum site-determining protein MinD compare
IAI47_08445 -1.0 -0.8 Holliday junction branch migration protein RuvA compare
IAI47_08200 -1.0 -2.2 hypothetical protein compare
IAI47_11635 -1.0 -2.5 hypothetical protein compare
IAI47_10265 -1.0 -2.7 helix-turn-helix domain-containing protein compare
IAI47_01005 -1.0 -4.7 DUF413 domain-containing protein compare
IAI47_00460 -1.0 -1.3 glutamate--ammonia ligase compare
IAI47_10575 -0.9 -2.2 hypothetical protein compare
IAI47_07350 -0.9 -0.5 hypothetical protein compare
IAI47_15415 -0.9 -3.3 aminoacyl-tRNA hydrolase compare
IAI47_18250 -0.9 -3.3 transcription/translation regulatory transformer protein RfaH compare
IAI47_16095 -0.9 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_06325 -0.9 -3.4 acetate kinase compare
IAI47_14980 -0.9 -2.4 hypothetical protein compare
IAI47_11605 -0.9 -2.6 hypothetical protein compare
IAI47_12770 -0.9 -3.1 MBL fold metallo-hydrolase compare
IAI47_17415 -0.9 -2.8 DUF3304 domain-containing protein compare
IAI47_04435 -0.9 -6.4 ATP-dependent chaperone ClpB compare
IAI47_06365 -0.9 -1.7 NADH-quinone oxidoreductase subunit B compare
IAI47_20155 -0.9 -2.8 molybdate ABC transporter substrate-binding protein compare
IAI47_07450 -0.9 -1.8 winged helix-turn-helix domain-containing protein compare
IAI47_01680 -0.9 -7.3 1,4-alpha-glucan branching enzyme compare
IAI47_10840 -0.9 -1.8 pyruvate kinase PykF compare
IAI47_10725 -0.9 -1.0 DUF1656 domain-containing protein compare
IAI47_02750 -0.9 -7.0 class 1 fructose-bisphosphatase compare
IAI47_09895 -0.9 -2.4 GNAT family N-acetyltransferase compare


Specific Phenotypes

For 10 genes in this experiment

For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms