Experiment set7IT024 for Herbaspirillum seropedicae SmR1

Compare to:

D-Glucose carbon source with ammonium chloride; anaerobic; 3 days

200 most important genes:

  gene name fitness t score description  
HSERO_RS16480 -8.0 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS18425 -6.8 -4.7 prephenate dehydrogenase compare
HSERO_RS20310 -6.6 -4.6 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS20350 -6.4 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS10180 -6.4 -2.7 flagellar biosynthesis protein FlgB compare
HSERO_RS20330 -6.3 -8.6 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS10185 -6.2 -17.0 flagellar basal body rod protein FlgC compare
HSERO_RS20315 -6.2 -7.3 imidazole glycerol phosphate synthase compare
HSERO_RS16505 -6.1 -8.8 3-isopropylmalate dehydratase small subunit compare
HSERO_RS10250 -6.0 -9.5 flagellar biosynthesis protein FliR compare
HSERO_RS02650 -6.0 -12.1 dihydroxy-acid dehydratase compare
HSERO_RS13890 -5.9 -8.5 LuxR family transcriptional regulator compare
HSERO_RS10205 -5.9 -17.1 flagellar basal body rod protein FlgG compare
HSERO_RS18430 -5.9 -6.3 chorismate mutase compare
HSERO_RS10200 -5.9 -8.4 flagellar basal body rod protein FlgF compare
HSERO_RS16515 -5.8 -11.4 isopropylmalate isomerase compare
HSERO_RS10190 -5.8 -7.9 flagellar basal body rod modification protein FlgD compare
HSERO_RS10305 -5.8 -10.1 flagellar motor switch protein FliG compare
HSERO_RS10195 -5.8 -16.5 flagellar hook protein FlgE compare
HSERO_RS10125 -5.8 -5.6 chemotaxis protein compare
HSERO_RS14985 -5.7 -15.3 transcriptional regulator compare
HSERO_RS10315 -5.7 -9.2 flagellar hook-basal body protein FliE compare
HSERO_RS16500 -5.7 -6.9 3-isopropylmalate dehydrogenase compare
HSERO_RS10275 -5.6 -23.4 flagellar motor switch protein FliM compare
HSERO_RS01935 -5.6 -8.2 3-dehydroquinate dehydratase compare
HSERO_RS10175 -5.6 -17.4 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10145 -5.5 -18.8 flagellar biosynthesis protein FlhA compare
HSERO_RS19510 -5.5 -12.8 threonine dehydratase compare
HSERO_RS08650 -5.5 -12.0 acetolactate synthase compare
HSERO_RS00455 -5.4 -11.5 homoserine O-acetyltransferase compare
HSERO_RS10230 -5.3 -14.2 flagellar hook-filament junction protein compare
HSERO_RS10290 -5.3 -15.1 flagellar biosynthesis protein FliJ compare
HSERO_RS13885 -5.3 -15.7 histidine kinase compare
HSERO_RS13280 -5.3 -3.6 precorrin-4 C11-methyltransferase compare
HSERO_RS10285 -5.3 -9.0 flagellar hook-length control protein compare
HSERO_RS00795 -5.3 -4.0 glycerol-3-phosphate dehydrogenase compare
HSERO_RS14970 -5.2 -19.1 flagellar motor protein MotB compare
HSERO_RS20345 -5.2 -8.2 histidinol dehydrogenase compare
HSERO_RS18990 -5.1 -7.1 pyrroline-5-carboxylate reductase compare
HSERO_RS14975 -5.1 -12.9 flagellar motor protein MotA compare
HSERO_RS01815 -5.1 -8.5 gamma-glutamyl kinase compare
HSERO_RS19595 -5.1 -14.0 glutamate synthase compare
HSERO_RS10310 -5.1 -9.8 flagellar M-ring protein FliF compare
HSERO_RS10160 -5.1 -6.9 flagellar biosynthesis sigma factor compare
HSERO_RS10295 -5.1 -17.1 ATP synthase compare
HSERO_RS19445 -5.0 -9.8 anthranilate phosphoribosyltransferase compare
HSERO_RS10340 -5.0 -5.5 flagellar biosynthesis protein FliS compare
HSERO_RS07160 -5.0 -8.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS10260 -5.0 -3.8 flagellar biosynthesis protein FliP compare
HSERO_RS02340 -5.0 -23.5 dihydroorotase compare
HSERO_RS10150 -5.0 -10.9 flagellar biosynthesis regulator FlhF compare
HSERO_RS14670 -4.9 -20.5 phosphoenolpyruvate carboxylase compare
HSERO_RS10215 -4.9 -7.4 flagellar P-ring protein FlgI compare
HSERO_RS02330 -4.9 -11.3 aspartate carbamoyltransferase compare
HSERO_RS10225 -4.9 -11.3 flagellar hook protein FlgK compare
HSERO_RS10355 -4.9 -10.6 flagellin compare
HSERO_RS19450 -4.8 -7.9 indole-3-glycerol-phosphate synthase compare
HSERO_RS17185 -4.7 -11.3 2-isopropylmalate synthase compare
HSERO_RS10140 -4.7 -7.9 flagellar biosynthesis protein FlhB compare
HSERO_RS15550 -4.7 -4.5 sulfite reductase compare
HSERO_RS07755 -4.6 -6.4 glutamate racemase compare
HSERO_RS20920 -4.6 -8.8 3-dehydroquinate synthase compare
HSERO_RS13260 -4.6 -6.2 cobinamide adenolsyltransferase compare
HSERO_RS19435 -4.5 -8.2 anthranilate synthase subunit I compare
HSERO_RS15565 -4.4 -5.8 sulfate adenylyltransferase subunit 2 compare
HSERO_RS20320 -4.4 -7.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS16475 -4.4 -2.6 tryptophan synthase subunit alpha compare
HSERO_RS09050 -4.3 -4.6 2-aminoadipate aminotransferase compare
HSERO_RS15560 -4.3 -6.3 phosphoadenosine phosphosulfate reductase compare
HSERO_RS13315 -4.3 -1.7 ferredoxin compare
HSERO_RS04950 -4.3 -14.1 deacetylase compare
HSERO_RS15555 -4.3 -5.0 oxidoreductase compare
HSERO_RS15040 -4.2 -8.6 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS10255 -4.2 -6.6 flagellar biosynthesis protein FliQ compare
HSERO_RS15570 -4.1 -6.6 sulfate adenylyltransferase compare
HSERO_RS13230 -4.1 -2.4 cobyric acid synthase compare
HSERO_RS16075 -4.1 -2.8 coproporphyrinogen III oxidase compare
HSERO_RS10115 -4.0 -7.4 chemotaxis protein CheR compare
HSERO_RS13310 -4.0 -9.5 cobaltochelatase compare
HSERO_RS07770 -3.9 -15.6 acetyl-CoA synthetase compare
HSERO_RS01180 -3.8 -11.5 acetyl-CoA acetyltransferase compare
HSERO_RS14950 -3.8 -3.6 purine-binding chemotaxis protein compare
HSERO_RS16470 -3.8 -2.3 tryptophan synthase subunit alpha compare
HSERO_RS16440 -3.8 -4.7 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS10460 -3.8 -2.1 homoserine dehydrogenase compare
HSERO_RS08660 -3.7 -9.2 ketol-acid reductoisomerase compare
HSERO_RS10280 -3.7 -3.3 flagellar basal body protein FliL compare
HSERO_RS20325 -3.7 -4.0 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS02325 -3.5 -15.5 uracil phosphoribosyltransferase compare
HSERO_RS21425 -3.5 -7.6 5,10-methylenetetrahydrofolate reductase compare
HSERO_RS10455 -3.3 -12.2 aminotransferase compare
HSERO_RS10265 -3.3 -9.4 flagellar biosynthesis protein FliO compare
HSERO_RS13305 -3.2 -6.6 magnesium chelatase compare
HSERO_RS13295 -3.2 -5.4 membrane protein compare
HSERO_RS14955 -3.2 -6.5 chemotaxis protein compare
HSERO_RS08655 -3.1 -4.2 acetolactate synthase compare
HSERO_RS04325 -3.1 -4.7 helicase I compare
HSERO_RS13240 -3.1 -5.4 cobalamin biosynthesis protein CobD compare
HSERO_RS01990 -3.0 -7.8 shikimate 5-dehydrogenase compare
HSERO_RS13270 -3.0 -7.5 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS05855 -2.9 -10.8 flagellar motor protein MotA compare
HSERO_RS03230 -2.9 -7.7 transcriptional regulator compare
HSERO_RS03225 -2.9 -14.5 histidine kinase compare
HSERO_RS10805 -2.9 -3.4 succinyldiaminopimelate aminotransferase compare
HSERO_RS21740 -2.8 -11.8 methionine synthase compare
HSERO_RS07970 -2.8 -1.6 formyltetrahydrofolate deformylase compare
HSERO_RS09770 -2.7 -6.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS05860 -2.7 -13.7 biopolymer transporter ExbD compare
HSERO_RS13255 -2.7 -4.2 cobyrinic acid a,c-diamide synthase compare
HSERO_RS18360 -2.7 -3.4 hypothetical protein compare
HSERO_RS15790 -2.6 -12.4 chemotaxis protein compare
HSERO_RS12690 -2.6 -5.1 transcriptional regulator compare
HSERO_RS05910 -2.6 -2.9 phosphoribosylglycinamide formyltransferase compare
HSERO_RS10850 -2.5 -4.2 ABC transporter compare
HSERO_RS15535 -2.5 -6.5 chemotaxis protein CheA compare
HSERO_RS09775 -2.5 -2.3 cobalamin synthase compare
HSERO_RS13275 -2.4 -2.2 cobalamin biosynthesis protein CbiG compare
HSERO_RS16490 -2.4 -18.3 FimV compare
HSERO_RS03215 -2.3 -11.3 sodium:solute symporter compare
HSERO_RS18995 -2.3 -5.2 hypothetical protein compare
HSERO_RS09780 -2.3 -3.3 phosphoglycerate mutase compare
HSERO_RS15585 -2.3 -7.4 cobalamin biosynthesis protein CbiX compare
HSERO_RS21420 -2.3 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
HSERO_RS19590 -2.2 -1.7 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS19550 -2.2 -7.6 hypothetical protein compare
HSERO_RS01985 -2.2 -7.0 energy transducer TonB compare
HSERO_RS00800 -2.2 -4.1 hypothetical protein compare
HSERO_RS10165 -2.1 -5.0 flagellar biosynthesis protein compare
HSERO_RS00460 -2.1 -6.8 methionine biosynthesis protein MetW compare
HSERO_RS18455 -2.1 -4.6 phosphoglycolate phosphatase compare
HSERO_RS15575 -2.1 -1.8 uroporphyrin-III C-methyltransferase compare
HSERO_RS03540 -2.1 -1.8 dimethyladenosine transferase compare
HSERO_RS20355 -2.1 -3.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS02260 -2.1 -2.5 DNA polymerase I compare
HSERO_RS16035 -2.0 -3.9 cytochrome C oxidase compare
HSERO_RS13290 -2.0 -5.2 cobalt-precorrin-6A synthase compare
HSERO_RS17980 -1.9 -3.4 GTP-binding protein compare
HSERO_RS15530 -1.9 -2.7 chemotaxis protein CheZ compare
HSERO_RS23945 -1.8 -3.1 cobyric acid synthase CobQ compare
HSERO_RS09220 -1.8 -4.0 hypothetical protein compare
HSERO_RS01965 -1.7 -8.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
HSERO_RS14930 -1.7 -2.2 aldolase compare
HSERO_RS01510 -1.7 -5.6 membrane protein compare
HSERO_RS08515 -1.7 -4.7 diguanylate cyclase compare
HSERO_RS13265 -1.7 -1.9 G3E family GTPase compare
HSERO_RS14170 -1.7 -1.3 thioredoxin compare
HSERO_RS03510 -1.7 -5.0 proline aminopeptidase P II compare
HSERO_RS15680 -1.7 -8.5 chemotaxis protein CheY compare
HSERO_RS16065 -1.7 -6.1 cation transporter compare
HSERO_RS03520 -1.7 -2.6 aminoglycoside phosphotransferase compare
HSERO_RS10865 -1.7 -4.9 PII uridylyl-transferase compare
HSERO_RS10815 -1.6 -5.4 chromosome segregation protein SMC compare
HSERO_RS10395 -1.6 -2.8 phosphate transport regulator compare
HSERO_RS13285 -1.6 -1.6 precorrin-2 C20-methyltransferase compare
HSERO_RS17110 -1.6 -1.9 ribonuclease H compare
HSERO_RS16030 -1.6 -1.8 cytochrome oxidase assembly protein compare
HSERO_RS16535 -1.6 -5.2 hypothetical protein compare
HSERO_RS09235 -1.6 -2.3 MarR family transcriptional regulator compare
HSERO_RS20365 -1.6 -1.7 metal-dependent hydrolase compare
HSERO_RS02090 -1.6 -1.8 Holliday junction DNA helicase RuvA compare
HSERO_RS19525 -1.6 -3.6 PTS sugar transporter subunit IIA compare
HSERO_RS16070 -1.6 -1.5 cytochrome biogenesis protein compare
HSERO_RS10565 -1.6 -7.1 isocitrate lyase compare
HSERO_RS01500 -1.5 -4.8 transketolase compare
HSERO_RS02470 -1.5 -6.5 tRNA (guanine-N7)-methyltransferase compare
HSERO_RS03875 -1.5 -1.6 hypothetical protein compare
HSERO_RS16055 -1.5 -6.6 cytochrome oxidase subunit I compare
HSERO_RS20240 -1.5 -1.6 cytochrome B compare
HSERO_RS03495 -1.5 -9.7 NAD(P) transhydrogenase subunit beta compare
HSERO_RS16885 -1.5 -0.5 magnesium-transporting ATPase compare
HSERO_RS09855 -1.4 -2.6 GTP pyrophosphokinase compare
HSERO_RS13235 -1.4 -5.0 threonine-phosphate decarboxylase compare
HSERO_RS04330 -1.4 -4.4 ATP-dependent exonuclease compare
HSERO_RS14935 -1.4 -1.5 hypothetical protein compare
HSERO_RS11065 -1.4 -2.8 quinolinate synthetase compare
HSERO_RS19835 -1.4 -4.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS08790 -1.4 -1.2 hypothetical protein compare
HSERO_RS03045 -1.4 -8.7 HrcA family transcriptional regulator compare
HSERO_RS11090 -1.4 -8.1 phosphoribosylglycinamide formyltransferase compare
HSERO_RS05475 -1.3 -6.9 gluconokinase compare
HSERO_RS15685 -1.3 -7.9 histidine kinase compare
HSERO_RS08430 -1.3 -4.6 diguanylate cyclase compare
HSERO_RS14630 -1.3 -5.0 histone acetyltransferase compare
HSERO_RS10210 -1.3 -3.0 flagellar L-ring protein FlgH compare
HSERO_RS00765 -1.3 -3.5 cytochrome C compare
HSERO_RS01915 -1.2 -5.8 membrane protein compare
HSERO_RS21100 -1.2 -7.1 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS09290 -1.2 -4.7 ribonuclease R compare
HSERO_RS10545 -1.2 -6.7 protein disaggregation chaperone compare
HSERO_RS03270 -1.2 -2.3 protein RecA compare
HSERO_RS11085 -1.2 -7.9 L-aspartate oxidase compare
HSERO_RS01530 -1.2 -4.4 3',5'-cyclic-nucleotide phosphodiesterase compare
HSERO_RS03465 -1.2 -3.6 hemin transporter compare
HSERO_RS03285 -1.2 -1.4 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS08115 -1.2 -1.3 acyl-CoA-binding protein compare
HSERO_RS03890 -1.1 -2.4 hypothetical protein compare
HSERO_RS10400 -1.1 -4.2 inorganic phosphate transporter compare
HSERO_RS10960 -1.1 -1.5 PEP synthetase regulatory protein compare
HSERO_RS07820 -1.1 -3.3 chemotaxis protein CheY compare
HSERO_RS06165 -1.1 -3.8 ATP-dependent DNA helicase RecG compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen fixation control D-Glucose in Herbaspirillum seropedicae SmR1

For nitrogen fixation control D-Glucose across organisms