Experiment set7IT023 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Fusidic acid sodium salt 0.4 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_464 -5.6 -3.8 Sensory histidine kinase QseC compare
Pf6N2E2_624 -4.9 -5.8 hypothetical protein PA3071 compare
Pf6N2E2_5430 -4.9 -7.4 Transglycosylase, Slt family compare
Pf6N2E2_621 -4.7 -7.1 TPR domain protein in aerotolerance operon compare
Pf6N2E2_463 -4.6 -6.9 Transcriptional regulatory protein RstA compare
Pf6N2E2_2694 -4.4 -8.4 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_3264 -4.3 -3.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4353 -4.1 -6.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2824 -4.1 -9.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2823 -4.0 -4.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4072 -3.8 -3.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_622 -3.7 -4.1 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4155 -3.6 -9.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5006 -3.6 -9.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_620 -3.5 -8.2 BatD compare
Pf6N2E2_4075 -3.5 -5.8 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3060 -3.5 -2.7 Outer membrane protein H precursor compare
Pf6N2E2_4074 -3.4 -14.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3484 -3.3 -11.6 Multidrug resistance transporter, Bcr/CflA family conserved
Pf6N2E2_3062 -3.3 -5.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_625 -3.3 -6.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2474 -3.2 -10.3 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5527 -3.2 -2.2 Cold shock protein CspC compare
Pf6N2E2_2825 -3.2 -4.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2752 -3.0 -9.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4204 -2.9 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4187 -2.8 -4.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4056 -2.8 -8.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_623 -2.7 -1.6 FIG00954674: hypothetical protein compare
Pf6N2E2_5727 -2.7 -7.5 FIG00955360: hypothetical protein compare
Pf6N2E2_4579 -2.7 -3.1 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2219 -2.7 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4352 -2.6 -4.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2574 -2.6 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_144 -2.6 -14.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4372 -2.6 -5.9 FIG00460773: hypothetical protein compare
Pf6N2E2_3257 -2.6 -3.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3607 -2.6 -8.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3258 -2.3 -5.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2067 -2.3 -16.0 cis/trans isomerase compare
Pf6N2E2_288 -2.3 -2.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3260 -2.3 -5.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2344 -2.2 -9.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4416 -2.2 -3.3 Tyrosine recombinase XerC compare
Pf6N2E2_4077 -2.1 -2.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_586 -2.0 -7.9 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_2261 -2.0 -5.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_5340 -2.0 -4.5 Stringent starvation protein A compare
Pf6N2E2_2473 -2.0 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_4743 -2.0 -1.4 hypothetical protein compare
Pf6N2E2_3144 -2.0 -6.4 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_5188 -1.9 -5.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_828 -1.9 -4.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2725 -1.9 -8.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) conserved
Pf6N2E2_5544 -1.9 -6.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_145 -1.9 -5.5 putative exported protein compare
Pf6N2E2_895 -1.9 -5.5 Transcriptional regulator, HxlR family compare
Pf6N2E2_4418 -1.8 -1.3 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_16 -1.8 -1.8 hypothetical protein compare
Pf6N2E2_3351 -1.8 -4.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2472 -1.8 -2.8 hypothetical protein compare
Pf6N2E2_248 -1.7 -7.5 hypothetical protein compare
Pf6N2E2_3617 -1.7 -3.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2753 -1.7 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_2699 -1.7 -7.0 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_5723 -1.7 -7.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5226 -1.7 -1.6 FIG00955589: hypothetical protein compare
Pf6N2E2_5001 -1.7 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5103 -1.7 -1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2646 -1.6 -2.0 FIG00953416: hypothetical protein compare
Pf6N2E2_4073 -1.6 -5.3 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_2129 -1.6 -2.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_923 -1.6 -2.7 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2471 -1.6 -5.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5780 -1.6 -7.4 Periplasmic protease compare
Pf6N2E2_2181 -1.6 -1.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2605 -1.6 -3.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4584 -1.5 -3.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2527 -1.5 -3.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3261 -1.5 -3.6 hypothetical protein compare
Pf6N2E2_2938 -1.5 -4.3 Outer membrane lipoprotein compare
Pf6N2E2_3249 -1.4 -6.9 Zn-dependent protease with chaperone function compare
Pf6N2E2_3612 -1.4 -2.2 HflK protein compare
Pf6N2E2_1774 -1.4 -1.8 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_127 -1.4 -1.6 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5242 -1.4 -2.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_613 -1.4 -1.6 lipoprotein, putative compare
Pf6N2E2_1705 -1.4 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4451 -1.4 -4.9 FIG139438: lipoprotein B compare
Pf6N2E2_2756 -1.4 -5.6 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2962 -1.4 -2.6 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2552 -1.4 -5.3 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4307 -1.4 -3.5 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3835 -1.4 -2.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4147 -1.4 -6.6 Fused spore maturation proteins A and B compare
Pf6N2E2_4305 -1.4 -1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_3833 -1.3 -4.1 hypothetical protein compare
Pf6N2E2_2871 -1.3 -3.1 FIG00954271: hypothetical protein compare
Pf6N2E2_2469 -1.3 -4.4 hypothetical protein compare
Pf6N2E2_3134 -1.3 -1.0 hypothetical protein compare
Pf6N2E2_5679 -1.3 -3.6 hypothetical protein compare
Pf6N2E2_2384 -1.3 -3.4 CmpX compare
Pf6N2E2_3834 -1.3 -4.7 Lipoprotein NlpD compare
Pf6N2E2_2869 -1.3 -1.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_5845 -1.3 -4.8 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5714 -1.3 -2.4 Flavoprotein WrbA compare
Pf6N2E2_58 -1.2 -2.5 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4585 -1.2 -7.4 Cell division protein FtsX compare
Pf6N2E2_2708 -1.2 -3.6 Lactam utilization protein LamB compare
Pf6N2E2_5862 -1.2 -2.1 Lipoprotein, putative compare
Pf6N2E2_3460 -1.2 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4025 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_3941 -1.1 -1.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1215 -1.1 -1.8 probable membrane protein YPO2362 compare
Pf6N2E2_2007 -1.1 -2.2 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_2479 -1.1 -2.6 Transcription elongation factor GreB compare
Pf6N2E2_33 -1.1 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4399 -1.1 -3.2 GGDEF domain/EAL domain protein compare
Pf6N2E2_4477 -1.1 -2.4 Z-ring-associated protein ZapA compare
Pf6N2E2_2038 -1.1 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2218 -1.1 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4160 -1.1 -1.1 Cytochrome c5 compare
Pf6N2E2_5346 -1.1 -2.3 rRNA small subunit methyltransferase I compare
Pf6N2E2_5059 -1.1 -5.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5337 -1.1 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4803 -1.1 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2293 -1.1 -4.4 COG0488: ATPase components of ABC transporters with duplicated ATPase domains compare
Pf6N2E2_4999 -1.1 -3.0 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4499 -1.1 -2.2 protein of unknown function DUF86 compare
Pf6N2E2_5508 -1.1 -1.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5536 -1.1 -1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2840 -1.1 -4.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4067 -1.1 -4.5 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_1116 -1.0 -1.3 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_5093 -1.0 -7.6 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3326 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_4279 -1.0 -5.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3942 -1.0 -5.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_189 -1.0 -2.7 regulatory protein, putative compare
Pf6N2E2_2 -1.0 -3.1 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_6099 -1.0 -1.0 tRNA-Glu-TTC compare
Pf6N2E2_4459 -1.0 -1.4 Transcriptional regulator, GntR family compare
Pf6N2E2_5898 -1.0 -1.8 Integral membrane protein compare
Pf6N2E2_75 -1.0 -2.7 Colicin V production protein compare
Pf6N2E2_1298 -1.0 -3.4 Xanthine transporter,putative compare
Pf6N2E2_4438 -1.0 -3.4 hypothetical protein compare
Pf6N2E2_800 -1.0 -4.5 FIG00962948: hypothetical protein compare
Pf6N2E2_4162 -1.0 -1.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2688 -1.0 -2.1 YD repeat protein compare
Pf6N2E2_5406 -1.0 -1.3 FIG00958224: hypothetical protein compare
Pf6N2E2_2080 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_5178 -1.0 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_6095 -1.0 -1.5 tRNA-Asn-GTT compare
Pf6N2E2_1044 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1723 -1.0 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1508 -1.0 -2.6 DNA-binding response regulator compare
Pf6N2E2_4982 -1.0 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_1776 -1.0 -1.4 Chemotaxis protein CheD compare
Pf6N2E2_2845 -1.0 -4.6 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_2681 -0.9 -3.2 3-phosphoglycerate kinase compare
Pf6N2E2_2606 -0.9 -3.5 hypothetical protein compare
Pf6N2E2_5339 -0.9 -3.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3096 -0.9 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5255 -0.9 -5.3 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5342 -0.9 -2.5 21 kDa hemolysin precursor compare
Pf6N2E2_928 -0.9 -2.1 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_3171 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_4059 -0.9 -0.8 DNA-binding protein HU-alpha compare
Pf6N2E2_4636 -0.9 -3.9 periplasmic binding protein, putative compare
Pf6N2E2_4545 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_180 -0.9 -2.2 Transcriptional regulator, MerR family compare
Pf6N2E2_5993 -0.9 -1.6 FIG00957412: hypothetical protein compare
Pf6N2E2_638 -0.9 -2.1 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4392 -0.9 -1.7 Translation initiation inhibitor compare
Pf6N2E2_1081 -0.9 -1.0 probable membrane protein YPO3302 compare
Pf6N2E2_5956 -0.9 -4.0 FIG004453: protein YceG like compare
Pf6N2E2_2309 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_2065 -0.9 -2.2 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5435 -0.9 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5841 -0.9 -1.0 GlcG protein compare
Pf6N2E2_3785 -0.9 -2.8 Twin-arginine translocation protein TatB compare
Pf6N2E2_2375 -0.8 -1.9 Response regulator NasT compare
Pf6N2E2_5219 -0.8 -3.8 FIG140336: TPR domain protein compare
Pf6N2E2_331 -0.8 -1.9 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_546 -0.8 -1.3 FIG00966904: hypothetical protein compare
Pf6N2E2_50 -0.8 -3.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_160 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_2488 -0.8 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5848 -0.8 -2.0 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf6N2E2_309 -0.8 -1.0 FIG00957702: hypothetical protein compare
Pf6N2E2_1735 -0.8 -1.5 PhnB protein compare
Pf6N2E2_1441 -0.8 -1.6 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5272 -0.8 -1.6 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_4478 -0.8 -3.2 FIG019278: hypothetical protein compare
Pf6N2E2_2188 -0.8 -2.2 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_4378 -0.8 -5.2 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
Pf6N2E2_4587 -0.8 -2.9 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
Pf6N2E2_1652 -0.8 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3017 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_672 -0.8 -1.6 ABC-type polar amino acid transport system, ATPase component compare


Specific Phenotypes

For 15 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas fluorescens FW300-N2E2

For stress Fusidic acid sodium salt across organisms