Experiment set7IT023 for Sinorhizobium meliloti 1021

Compare to:

Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

200 most important genes:

  gene name fitness t score description  
SMc00614 -7.0 -4.8 phosphoribosylglycinamide formyltransferase compare
SMc02137 -6.9 -3.9 ornithine carbamoyltransferase compare
SMc00235 -6.2 -7.5 anthranilate phosphoribosyltransferase compare
SM_b21176 -5.9 -4.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00494 -5.8 -1.5 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00493 -5.5 -6.4 phosphoribosylformylglycinamidine synthase I compare
SMc02077 -5.4 -3.0 exodeoxyribonuclease III protein compare
SMc02863 -5.2 -4.3 recombination protein F compare
SMc00131 -5.2 -17.0 transcriptional regulator compare
SMc02572 -5.2 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
SMc02899 -5.1 -12.8 prephenate dehydratase compare
SMc01801 -5.0 -2.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc04405 -5.0 -7.3 3-isopropylmalate dehydrogenase compare
SMc03797 -5.0 -10.0 homoserine O-succinyltransferase compare
SMc02124 -5.0 -13.9 nitrite reductase compare
SMc00092 -4.9 -13.0 phosphoadenosine phosphosulfate reductase compare
SMc04028 -4.9 -19.8 glutamate synthase compare
SMc01054 -4.9 -4.5 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc02307 -4.9 -5.8 histidinol dehydrogenase compare
SMc00488 -4.8 -18.8 phosphoribosylformylglycinamidine synthase II compare
SMc04001 -4.8 -1.2 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00918 -4.8 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
SMc02570 -4.7 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03895 -4.7 -17.9 pyruvate carboxylase compare
SMc00640 -4.7 -9.6 phosphoserine aminotransferase compare
SMc02766 -4.7 -16.7 tryptophan synthase subunit beta compare
SMc01726 -4.7 -5.3 acetylglutamate kinase compare
SMc03070 -4.6 -7.1 glucose-6-phosphate 1-dehydrogenase compare
SMc00228 -4.6 -14.7 ATP-dependent DNA helicase RecG compare
SMc00993 -4.6 -9.2 phosphoribosylamine--glycine ligase compare
SMc01494 -4.5 -11.3 phosphoserine phosphatase compare
SMc03823 -4.5 -12.1 isopropylmalate isomerase large subunit compare
SMc02217 -4.5 -7.0 O-succinylhomoserine sulfhydrylase compare
SMc04026 -4.5 -8.3 glutamate synthase compare
SMc04045 -4.5 -8.9 dihydroxy-acid dehydratase compare
SMc02717 -4.4 -17.5 2-isopropylmalate synthase compare
SMc00917 -4.4 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc03777 -4.4 -8.5 gamma-glutamyl phosphate reductase compare
SMc02635 -4.4 -8.6 DNA repair protein RecO compare
SMc01431 -4.3 -17.4 acetolactate synthase 3 catalytic subunit compare
SMc01843 -4.3 -10.5 5,10-methylenetetrahydrofolate reductase compare
SM_b21175 -4.3 -3.4 phosphate uptake ABC transporter permease compare
SMc04088 -4.3 -8.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03229 -4.3 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03112 -4.3 -16.0 B12-dependent methionine synthase compare
SMc00554 -4.3 -9.1 amidophosphoribosyltransferase compare
SMc00090 -4.2 -11.7 sulfate adenylyltransferase compare
SMc00495 -4.2 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00615 -4.2 -7.7 phosphoribosylaminoimidazole synthetase compare
SMc00293 -4.2 -11.0 homoserine dehydrogenase compare
SMc01235 -4.2 -13.6 excinuclease ABC subunit A compare
SMc00236 -4.1 -4.1 Indole-3-glycerol phosphate synthase compare
SMc00091 -4.1 -11.5 sulfate adenylyltransferase compare
SMc02245 -4.1 -3.9 dihydroorotate dehydrogenase 2 compare
SMc02574 -4.1 -6.6 imidazoleglycerol-phosphate dehydratase compare
SMc03979 -4.1 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
SMa1635 -4.1 -2.1 hypothetical protein compare
SMc00815 -4.1 -1.8 inosine 5'-monophosphate dehydrogenase compare
SMc03789 -4.1 -5.3 hypothetical protein compare
SMc02850 -4.0 -2.7 DNA polymerase I compare
SMc03069 -4.0 -2.8 6-phosphogluconolactonase compare
SM_b21174 -3.9 -4.4 phosphate uptake ABC transporter permease compare
SMc00017 -3.9 -1.4 homoserine kinase compare
SMc02725 -3.8 -13.2 anthranilate synthase compare
SMc02070 -3.8 -11.6 hypothetical protein compare
SMc02569 -3.8 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
SMc02165 -3.8 -5.2 orotate phosphoribosyltransferase compare
SMc03790 -3.8 -5.2 hypothetical protein compare
SMc02166 -3.8 -9.2 dihydroorotase compare
SMc01004 -3.7 -8.2 phosphoribosyl-AMP cyclohydrolase compare
SMc01206 -3.7 -1.3 queuine tRNA-ribosyltransferase compare
SMc02767 -3.7 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02123 -3.7 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02765 -3.6 -10.6 tryptophan synthase subunit alpha compare
SMc00711 -3.6 -2.9 cyclohexadienyl dehydrogenase compare
SMc00556 -3.6 -5.4 DNA repair protein RadA compare
SMc02908 -3.6 -4.7 recombination protein RecR compare
SMc03788 -3.5 -15.7 DNA polymerase III subunit alpha compare
SMc01053 -3.5 -5.9 siroheme synthase compare
SMc01765 -3.5 -2.0 hypothetical protein compare
SMc03127 -3.5 -1.7 ABC transporter permease compare
SMc00691 -3.4 -3.6 site-specific tyrosine recombinase XerD compare
SMc03068 -3.4 -8.8 phosphogluconate dehydratase compare
SM_b21177 -3.4 -9.0 phosphate uptake ABC transporter ATP-binding protein compare
SMc00412 -3.4 -4.0 orotidine 5'-phosphate decarboxylase compare
SMc02755 -3.4 -5.2 S-adenosyl-L-homocysteine hydrolase compare
SMc04002 -3.2 -7.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02835 -3.2 -9.2 glucokinase compare
SMc01770 -3.1 -1.7 serine hydroxymethyltransferase compare
SMc04346 -3.1 -4.3 ketol-acid reductoisomerase compare
SMc03795 -3.0 -1.0 isopropylmalate isomerase small subunit compare
SMc00641 -2.9 -5.6 D-3-phosphoglycerate dehydrogenase compare
SMc00024 -2.8 -3.7 chromosome partition protein compare
SMc00760 -2.8 -4.8 recombinase A compare
SM_b20903 -2.8 -8.1 sugar uptake ABC transporter permease compare
SMc02069 -2.7 -3.8 hypothetical protein compare
SMc02425 -2.7 -3.2 transcriptional regulator compare
SMc00914 -2.7 -4.5 oxidoreductase compare
SMc02138 -2.7 -6.1 acetylornithine transaminase compare
SMc00414 -2.6 -13.4 hypothetical protein compare
SMc02147 -2.6 -3.5 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc00295 -2.6 -0.8 hypothetical protein compare
SMc03100 -2.5 -1.7 hypothetical protein compare
SMc04231 -2.4 -5.9 excinuclease ABC subunit B compare
SMc03978 -2.4 -1.7 transketolase compare
SM_b20902 -2.4 -8.7 sugar uptake ABC transporter substrate-binding protein precursor compare
SMc01880 -2.4 -2.7 pantoate--beta-alanine ligase compare
SMc04005 -2.4 -6.6 pyruvate kinase compare
SMc03046 -2.4 -5.4 transcriptional regulator compare
SMc00602 -2.4 -4.3 excinuclease ABC subunit C compare
SMc03051 -2.3 -2.6 flagellar biosynthesis repressor FlbT compare
SMc03924 -2.3 -8.4 glycogen synthase compare
SMc01361 -2.3 -3.0 dihydroorotase compare
SMc02058 -2.3 -2.3 YAJC protein compare
SM_b20904 -2.3 -2.9 sugar uptake ABC transporter ATP-binding protein compare
SMc01595 -2.2 -3.9 sensor histidine kinase transmembrane protein compare
SM_b20293 -2.2 -0.9 hypothetical protein compare
SMc00588 -2.2 -2.2 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
SMc01461 -2.1 -5.9 DNA helicase II protein compare
SMc01568 -2.1 -1.4 hypothetical protein compare
SMc00143 -2.0 -1.7 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc02246 -2.0 -0.5 hypothetical protein compare
SMc01119 -2.0 -1.8 hypothetical protein compare
SMc01360 -2.0 -1.6 aspartate carbamoyltransferase catalytic subunit compare
SMc04298 -2.0 -1.5 hypothetical protein compare
SMc03826 -1.9 -1.2 argininosuccinate synthase compare
SMc01877 -1.9 -1.7 DNA repair protein compare
SMc01147 -1.9 -2.5 coproporphyrinogen III oxidase compare
SMc03967 -1.9 -0.8 Holliday junction resolvase compare
SMc01881 -1.9 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc03763 -1.9 -1.3 cytosine-specific methyltransferase compare
SMc00565 -1.8 -0.8 50S ribosomal protein L9 compare
SMc04296 -1.8 -0.9 cell division protein FtsZ compare
SMc03776 -1.8 -2.0 gamma-glutamyl kinase compare
SMc01842 -1.8 -2.2 methyltransferase transcription regulator protein compare
SMc00619 -1.8 -0.9 hypothetical protein compare
SMc03242 -1.8 -1.6 GTP-binding protein compare
SMc02724 -1.8 -2.6 hypothetical protein compare
SMc03899 -1.8 -0.9 hypothetical protein compare
SMc00334 -1.7 -1.0 cytidylate kinase compare
SMc02055 -1.7 -1.4 phytoene synthase compare
SMc02144 -1.7 -2.3 phosphate ABC transporter permease compare
SMc02515 -1.6 -2.9 hypothetical protein compare
SMc02561 -1.6 -1.9 hypothetical protein compare
SMc02833 -1.6 -1.3 penicillin-insensitive murein endopeptidase compare
SMc04244 -1.6 -3.9 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc01441 -1.6 -3.4 membrane bound protease compare
SMc00053 -1.6 -0.7 monovalent cation/H+ antiporter subunit C compare
SMc01440 -1.6 -3.3 hydrolase serine protease transmembrane protein compare
SMc02142 -1.6 -2.9 phosphate transporter ATP-binding protein compare
SMc02714 -1.6 -1.2 hypothetical protein compare
SM_b20042 -1.5 -3.3 hypothetical protein compare
SMc02373 -1.5 -1.1 hypothetical protein compare
SMc02449 -1.5 -1.9 acetyltransferase compare
SMc00963 -1.4 -1.5 hypothetical protein compare
SMc02510 -1.4 -0.7 ferric uptake regulation protein compare
SMc00970 -1.4 -2.3 exodeoxyribonuclease VII small subunit compare
SMc01569 -1.4 -0.5 carbamoyl phosphate synthase small subunit compare
SM_b20392 -1.4 -3.7 transcriptional regulator NanR compare
SMc03053 -1.4 -1.2 flagellar biosynthesis protein FliQ compare
SMc01619 -1.4 -2.1 hypothetical protein compare
SMc02753 -1.4 -0.9 PTS system transporter subunit IIA compare
SMc02107 -1.4 -0.8 hypothetical protein compare
SMc00239 -1.4 -0.8 hypothetical protein compare
SMc02068 -1.4 -6.3 ABC transporter ATP-binding protein compare
SMc02232 -1.3 -1.5 hypothetical protein compare
SMc01208 -1.3 -2.4 peptidyl-prolyl cis-trans isomerase B protein compare
SM_b21395 -1.3 -1.6 hypothetical protein compare
SMc01800 -1.3 -0.8 cytochrome C oxidase assembly transmembrane protein compare
SMc01929 -1.3 -2.2 hypothetical protein compare
SMc02615 -1.3 -1.8 signal peptide protein compare
SMc02140 -1.3 -0.7 phosphate regulon transcriptional regulatory protein compare
SMa5031 -1.3 -1.4 hypothetical protein compare
SM_b20822 -1.3 -4.0 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc02141 -1.3 -1.9 phosphate transporter PhoU compare
SMc04450 -1.3 -7.7 transcription-repair coupling factor compare
SMc03981 -1.3 -2.0 phosphoglycerate kinase compare
SMc00784 -1.3 -7.1 iron binding protein compare
SMc04236 -1.2 -2.4 glycine-rich cell wall structural transmembrane protein compare
SMc01094 -1.2 -2.8 multidrug efflux system transmembrane protein compare
SMc01471 -1.2 -2.4 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02361 -1.2 -2.9 cytochrome C-type biogenesis transmembrane protein compare
SM_b21669 -1.2 -1.9 hypothetical protein compare
SMc04245 -1.2 -4.5 high-affinity zinc uptake system ABC transporter protein compare
SMc04243 -1.2 -4.3 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc00995 -1.2 -1.9 hypothetical protein compare
SMc00982 -1.2 -3.6 dioxygenase compare
SMc00067 -1.2 -4.3 outer-membranne lipoprotein compare
SMc00419 -1.2 -2.2 glutathione synthetase compare
SMc03030 -1.2 -3.0 flagellar basal body rod protein FlgG compare
SMc01183 -1.2 -0.6 LexA repressor compare
SM_b20307 -1.1 -0.7 dihydroxyacetone kinase compare
SM_b20897 -1.1 -1.0 hypothetical protein compare
SMc03878 -1.1 -1.9 acetoacetyl-CoA reductase compare
SM_b21482 -1.1 -1.8 hypothetical protein compare
SMc03993 -1.1 -1.5 hypothetical protein compare
SMc00461 -1.1 -1.4 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc02707 -1.1 -2.3 hypothetical protein compare
SMc03312 -1.1 -1.3 transposase ISRM11/ISRM2011-2 compare
SMa0995 -1.1 -2.0 TRm5 transposase compare


Specific Phenotypes

For 9 genes in this experiment

For in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct in Sinorhizobium meliloti 1021

For in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct across organisms