Experiment set7IT023 for Methanococcus maripaludis S2

Compare to:

Iron limitation, H2 media

200 most important genes:

  gene name fitness t score description  
MMP_RS08720 -3.7 -3.9 4Fe-4S binding protein compare
MMP_RS02145 -3.7 -13.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS03315 -3.5 -2.9 ferrous iron transport protein A compare
MMP_RS01175 -3.2 -6.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06400 -3.1 -2.8 4Fe-4S binding protein compare
MMP_RS05515 -3.1 -13.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03475 -3.1 -1.5 hypothetical protein compare
MMP_RS02010 -3.0 -13.9 PHP domain-containing protein compare
MMP_RS07635 -3.0 -9.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03015 -3.0 -16.7 GTP 3' 8-cyclase MoaA compare
MMP_RS06355 -3.0 -5.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01265 -2.9 -5.1 hypothetical protein compare
MMP_RS01005 -2.8 -2.9 riboflavin synthase compare
MMP_RS06350 -2.6 -7.2 HesA/MoeB/ThiF family protein compare
MMP_RS06120 -2.6 -3.2 UPF0147 family protein compare
MMP_RS00040 -2.5 -5.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06625 -2.5 -3.6 DNA primase compare
MMP_RS08715 -2.4 -3.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03025 -2.4 -7.4 molybdenum cofactor guanylyltransferase compare
MMP_RS02240 -2.4 -6.2 methanogenesis marker 7 protein compare
MMP_RS03110 -2.4 -8.6 glycosyltransferase family 2 protein compare
MMP_RS06840 -2.3 -1.8 DNA-directed RNA polymerase subunit N compare
MMP_RS03700 -2.3 -10.1 sodium:proton antiporter compare
MMP_RS01725 -2.3 -7.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS08650 -2.3 -4.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08635 -2.2 -3.9 UbiA family prenyltransferase compare
MMP_RS01885 -2.1 -9.6 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06110 -2.1 -4.5 ATP-dependent protease LonB compare
MMP_RS01020 -2.1 -1.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS02280 -2.1 -1.6 DUF211 domain-containing protein compare
MMP_RS08745 -2.1 -9.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS04500 -2.1 -15.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS00750 -2.1 -3.7 fumarate hydratase compare
MMP_RS03435 -2.0 -2.5 ketol-acid reductoisomerase compare
MMP_RS06370 -2.0 -7.2 biotin synthase BioB compare
MMP_RS00695 -2.0 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01880 -2.0 -8.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01500 -2.0 -2.9 CBS domain-containing protein compare
MMP_RS07735 -2.0 -1.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05285 -1.9 -10.0 MMPL family transporter compare
MMP_RS02195 -1.9 -6.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07545 -1.9 -1.9 HTH domain-containing protein compare
MMP_RS01610 -1.9 -5.1 hypothetical protein compare
MMP_RS01900 -1.8 -13.6 hypothetical protein compare
MMP_RS01905 -1.8 -13.3 glycosyltransferase compare
MMP_RS01875 -1.8 -11.6 N-acetyltransferase compare
MMP_RS08790 -1.8 -2.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS08095 -1.8 -10.3 dethiobiotin synthase compare
MMP_RS08460 -1.8 -3.3 proteasome-activating nucleotidase compare
MMP_RS05280 -1.8 -9.6 COG1361 S-layer family protein compare
MMP_RS01890 -1.8 -5.5 nucleotide sugar dehydrogenase compare
MMP_RS08435 -1.8 -2.7 Era-like GTP-binding protein compare
MMP_RS04710 -1.8 -3.0 hypothetical protein compare
MMP_RS01225 -1.8 -6.2 DUF5379 domain-containing protein compare
MMP_RS03205 -1.8 -2.7 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01925 -1.8 -10.9 DUF1616 domain-containing protein compare
MMP_RS03960 -1.7 -1.6 hypothetical protein compare
MMP_RS01955 -1.7 -4.0 hypothetical protein compare
MMP_RS04780 -1.7 -3.8 ribonuclease P compare
MMP_RS08300 -1.7 -1.7 metal-sulfur cluster assembly factor compare
MMP_RS05555 -1.7 -2.5 DUF4040 domain-containing protein compare
MMP_RS08100 -1.7 -6.8 8-amino-7-oxononanoate synthase compare
MMP_RS06670 -1.7 -8.7 glucose-6-phosphate isomerase compare
MMP_RS06730 -1.6 -2.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS00300 -1.6 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03600 -1.6 -3.0 triose-phosphate isomerase compare
MMP_RS06475 -1.6 -7.1 FAD-dependent oxidoreductase compare
MMP_RS07845 -1.6 -3.2 LL-diaminopimelate aminotransferase compare
MMP_RS01960 -1.6 -1.6 hypothetical protein compare
MMP_RS06270 -1.6 -6.2 TIGR00300 family protein compare
MMP_RS06295 -1.6 -7.6 methanogenesis marker 14 protein compare
MMP_RS06885 -1.6 -4.4 50S ribosome-binding GTPase compare
MMP_RS03580 -1.6 -3.8 signal recognition particle-docking protein FtsY compare
MMP_RS04605 -1.6 -5.5 cobalt ECF transporter T component CbiQ compare
MMP_RS07200 -1.6 -8.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00895 -1.6 -3.9 hypothetical protein compare
MMP_RS03640 -1.5 -4.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07955 -1.5 -5.4 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07390 -1.5 -3.4 cell division protein FtsZ compare
MMP_RS00520 -1.5 -2.6 RNA polymerase Rpb4 family protein compare
MMP_RS07525 -1.5 -7.8 4Fe-4S binding protein compare
MMP_RS06285 -1.5 -2.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07710 -1.5 -7.1 cell division protein FtsZ compare
MMP_RS04685 -1.5 -2.9 DUF126 domain-containing protein compare
MMP_RS07420 -1.5 -3.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06485 -1.5 -1.6 zinc ribbon domain-containing protein compare
MMP_RS02345 -1.5 -3.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS05920 -1.4 -0.5 50S ribosomal protein L37e compare
MMP_RS04090 -1.4 -3.1 hypothetical protein compare
MMP_RS01380 -1.4 -5.1 PHP domain-containing protein compare
MMP_RS08820 -1.4 -6.2 hypothetical protein compare
MMP_RS02900 -1.4 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06940 -1.4 -3.9 polyprenyl diphosphate synthase compare
MMP_RS08105 -1.4 -6.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS08210 -1.4 -3.2 phosphatidylglycerophosphatase A compare
MMP_RS05540 -1.4 -2.9 hypothetical protein compare
MMP_RS01970 -1.4 -10.6 TIGR04279 domain-containing protein compare
MMP_RS08195 -1.4 -7.4 hypothetical protein compare
MMP_RS04890 -1.4 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS04775 -1.4 -3.7 adenosylhomocysteinase compare
MMP_RS07540 -1.4 -4.5 CBS domain-containing protein compare
MMP_RS01910 -1.4 -9.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS07755 -1.4 -1.8 DUF555 domain-containing protein compare
MMP_RS03485 -1.4 -4.9 TIGR00267 family protein compare
MMP_RS01975 -1.4 -10.4 hypothetical protein compare
MMP_RS01385 -1.4 -0.9 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03400 -1.3 -2.9 archease compare
MMP_RS06895 -1.3 -1.5 selenocysteine-specific translation elongation factor compare
MMP_RS05250 -1.3 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01915 -1.3 -10.2 DUF354 domain-containing protein compare
MMP_RS04585 -1.3 -8.6 AIR synthase related protein compare
MMP_RS03035 -1.3 -4.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07630 -1.3 -2.3 ATP-binding cassette domain-containing protein compare
MMP_RS01895 -1.3 -9.9 flippase compare
MMP_RS06725 -1.3 -7.5 hypothetical protein compare
MMP_RS01545 -1.3 -1.4 CBS domain-containing protein compare
MMP_RS07090 -1.3 -7.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS05815 -1.3 -2.4 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS07075 -1.3 -5.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS02175 -1.3 -1.1 DUF1611 domain-containing protein compare
MMP_RS08785 -1.3 -1.3 RNA-protein complex protein Nop10 compare
MMP_RS04485 -1.2 -9.1 putative beta-lysine N-acetyltransferase compare
MMP_RS01840 -1.2 -7.3 TIGR00289 family protein compare
MMP_RS03095 -1.2 -5.3 diphthine synthase compare
MMP_RS07695 -1.2 -7.3 DUF3236 domain-containing protein compare
MMP_RS01665 -1.2 -5.8 DUF2111 domain-containing protein compare
MMP_RS02135 -1.2 -4.0 DUF5612 domain-containing protein compare
MMP_RS00810 -1.2 -6.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07645 -1.2 -5.5 aldehyde dehydrogenase family protein compare
MMP_RS04900 -1.2 -10.1 hypothetical protein compare
MMP_RS00115 -1.2 -7.8 radical SAM protein compare
MMP_RS00730 -1.2 -6.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS03445 -1.2 -1.2 methanogenesis marker 17 protein compare
MMP_RS09020 -1.2 -1.5 hypothetical protein compare
MMP_RS07365 -1.1 -7.3 2-phosphoglycerate kinase compare
MMP_RS06020 -1.1 -4.5 archaeoflavoprotein AfpA compare
MMP_RS00915 -1.1 -5.1 DUF116 domain-containing protein compare
MMP_RS03590 -1.1 -3.5 METTL5 family protein compare
MMP_RS06865 -1.1 -1.7 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00060 -1.1 -1.5 3-dehydroquinate synthase II compare
MMP_RS01755 -1.1 -1.8 DUF2097 domain-containing protein compare
MMP_RS01220 -1.1 -5.6 hypothetical protein compare
MMP_RS07600 -1.1 -2.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07005 -1.1 -0.8 4Fe-4S binding protein compare
MMP_RS02355 -1.1 -2.5 30S ribosomal protein S27ae compare
MMP_RS00985 -1.1 -3.9 CDC48 family AAA ATPase compare
MMP_RS08440 -1.1 -3.3 cell division protein SepF compare
MMP_RS07380 -1.1 -2.0 transcription elongation factor Spt5 compare
MMP_RS07195 -1.1 -6.1 M20 family metallo-hydrolase compare
MMP_RS05640 -1.0 -4.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS04870 -1.0 -5.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS05355 -1.0 -1.1 hypothetical protein compare
MMP_RS07190 -1.0 -4.3 chromosome segregation protein SMC compare
MMP_RS00315 -1.0 -4.1 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01920 -1.0 -8.1 glycosyltransferase family 2 protein compare
MMP_RS03520 -1.0 -2.4 YwbE family protein compare
MMP_RS06395 -1.0 -4.3 ThiF family adenylyltransferase compare
MMP_RS07580 -1.0 -2.5 DUF356 domain-containing protein compare
MMP_RS01940 -1.0 -3.7 MoxR family ATPase compare
MMP_RS02875 -1.0 -6.6 chorismate pyruvate-lyase family protein compare
MMP_RS08595 -1.0 -1.1 flagellar protein C compare
MMP_RS00110 -1.0 -1.9 hypothetical protein compare
MMP_RS01240 -1.0 -1.0 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS02245 -1.0 -3.5 hypothetical protein compare
MMP_RS05845 -1.0 -1.5 tRNA-intron lyase compare
MMP_RS00725 -1.0 -5.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS05550 -0.9 -0.8 cation:proton antiporter compare
MMP_RS05580 -0.9 -7.9 glycosyltransferase compare
MMP_RS06105 -0.9 -4.6 hydrogenase maturation peptidase HycI compare
MMP_RS03155 -0.9 -4.5 precorrin-6A reductase compare
MMP_RS04955 -0.9 -4.7 DNA topoisomerase I compare
MMP_RS05245 -0.9 -5.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00735 -0.9 -3.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS04720 -0.9 -2.3 DedA family protein compare
MMP_RS07875 -0.9 -3.3 hypothetical protein compare
MMP_RS05430 -0.9 -4.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS00900 -0.9 -2.0 50S ribosomal protein L39e compare
MMP_RS05930 -0.9 -2.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS07750 -0.9 -3.1 DUF357 domain-containing protein compare
MMP_RS03140 -0.9 -5.3 hypothetical protein compare
MMP_RS02130 -0.9 -3.4 zinc metalloprotease HtpX compare
MMP_RS08605 -0.9 -4.2 flagellar protein E compare
MMP_RS06630 -0.9 -0.8 UPF0058 family protein compare
MMP_RS00720 -0.8 -4.1 metal-dependent hydrolase compare
MMP_RS01800 -0.8 -2.6 TIGR00303 family protein compare
MMP_RS06525 -0.8 -1.4 YciI family protein compare
MMP_RS01045 -0.8 -5.7 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS08590 -0.8 -3.9 flagellin compare
MMP_RS01325 -0.8 -1.9 dihydroneopterin aldolase family protein compare
MMP_RS01795 -0.8 -1.3 methanogenesis marker 6 protein compare
MMP_RS02930 -0.8 -2.6 class I SAM-dependent methyltransferase compare
MMP_RS07730 -0.8 -1.5 pyruvate synthase subunit beta compare
MMP_RS03420 -0.8 -1.8 acetolactate synthase small subunit compare
MMP_RS06980 -0.8 -3.7 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS05535 -0.8 -3.2 hypothetical protein compare
MMP_RS04850 -0.8 -6.9 UPF0254 family protein compare
MMP_RS00685 -0.8 -3.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01830 -0.8 -1.0 tRNA-Val compare
MMP_RS06310 -0.8 -3.1 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS01365 -0.8 -2.2 archaeal proteasome endopeptidase complex subunit alpha compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms