Experiment set7IT022 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Fusidic acid sodium salt 0.3 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -5.2 -2.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5430 -4.9 -9.5 Transglycosylase, Slt family compare
Pf6N2E2_622 -4.8 -5.5 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3264 -4.8 -3.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_624 -4.6 -6.3 hypothetical protein PA3071 compare
Pf6N2E2_464 -4.6 -3.7 Sensory histidine kinase QseC compare
Pf6N2E2_2694 -4.6 -9.7 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_2646 -4.5 -3.0 FIG00953416: hypothetical protein compare
Pf6N2E2_2825 -4.2 -2.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2824 -3.9 -12.0 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4075 -3.9 -7.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_625 -3.8 -6.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2823 -3.7 -6.5 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4072 -3.6 -6.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_621 -3.6 -9.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_463 -3.6 -8.4 Transcriptional regulatory protein RstA compare
Pf6N2E2_5527 -3.6 -2.4 Cold shock protein CspC compare
Pf6N2E2_3484 -3.5 -10.4 Multidrug resistance transporter, Bcr/CflA family conserved
Pf6N2E2_4353 -3.5 -7.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_620 -3.4 -9.9 BatD compare
Pf6N2E2_2752 -3.3 -10.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4416 -3.2 -4.2 Tyrosine recombinase XerC compare
Pf6N2E2_4187 -3.1 -6.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2219 -2.9 -1.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2474 -2.9 -10.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4074 -2.8 -14.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5178 -2.7 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4579 -2.7 -4.3 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4352 -2.7 -4.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3607 -2.5 -9.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3261 -2.4 -5.8 hypothetical protein compare
Pf6N2E2_4372 -2.4 -6.7 FIG00460773: hypothetical protein compare
Pf6N2E2_5727 -2.4 -6.5 FIG00955360: hypothetical protein compare
Pf6N2E2_4399 -2.3 -6.2 GGDEF domain/EAL domain protein compare
Pf6N2E2_238 -2.3 -3.0 hypothetical protein compare
Pf6N2E2_623 -2.2 -1.6 FIG00954674: hypothetical protein compare
Pf6N2E2_1116 -2.2 -1.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4636 -2.1 -8.4 periplasmic binding protein, putative compare
Pf6N2E2_2753 -2.1 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_4155 -2.1 -9.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3661 -2.0 -6.0 hypothetical protein compare
Pf6N2E2_3351 -2.0 -5.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4963 -2.0 -2.8 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_5340 -1.9 -5.1 Stringent starvation protein A compare
Pf6N2E2_3060 -1.9 -3.3 Outer membrane protein H precursor compare
Pf6N2E2_1987 -1.8 -2.2 hypothetical protein compare
Pf6N2E2_3260 -1.7 -5.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_144 -1.7 -12.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_2852 -1.7 -7.7 GGDEF domain/EAL domain protein compare
Pf6N2E2_4624 -1.7 -1.4 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3258 -1.6 -5.0 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5544 -1.6 -6.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2067 -1.6 -11.7 cis/trans isomerase compare
Pf6N2E2_3460 -1.6 -1.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3062 -1.6 -3.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5508 -1.6 -2.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_248 -1.5 -5.3 hypothetical protein compare
Pf6N2E2_2261 -1.5 -5.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_3095 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_1694 -1.5 -1.6 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_746 -1.5 -2.1 FIG00958097: hypothetical protein compare
Pf6N2E2_4056 -1.5 -6.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2218 -1.5 -4.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2471 -1.5 -7.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4743 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_2605 -1.4 -4.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_1089 -1.4 -1.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3617 -1.4 -5.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4640 -1.4 -2.2 hypothetical protein compare
Pf6N2E2_3515 -1.4 -4.9 Probable transmembrane protein compare
Pf6N2E2_5346 -1.3 -3.3 rRNA small subunit methyltransferase I compare
Pf6N2E2_5006 -1.3 -5.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2586 -1.3 -2.0 Hpt domain protein compare
Pf6N2E2_3270 -1.3 -3.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3753 -1.3 -9.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_145 -1.3 -5.6 putative exported protein compare
Pf6N2E2_5679 -1.3 -4.6 hypothetical protein compare
Pf6N2E2_1584 -1.3 -2.9 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_5093 -1.3 -9.0 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_2472 -1.3 -2.3 hypothetical protein compare
Pf6N2E2_5780 -1.3 -7.1 Periplasmic protease compare
Pf6N2E2_4451 -1.3 -4.5 FIG139438: lipoprotein B compare
Pf6N2E2_595 -1.3 -3.1 Arsenical resistance operon repressor compare
Pf6N2E2_4057 -1.3 -1.0 lipoprotein, putative compare
Pf6N2E2_2706 -1.2 -3.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3257 -1.2 -3.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5155 -1.2 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5086 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_75 -1.2 -2.5 Colicin V production protein compare
Pf6N2E2_2176 -1.2 -2.8 Amidases related to nicotinamidase compare
Pf6N2E2_5156 -1.2 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3569 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_4073 -1.2 -4.3 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_1740 -1.1 -1.9 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_4414 -1.1 -1.6 FIG00953808: hypothetical protein compare
Pf6N2E2_5316 -1.1 -2.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4276 -1.1 -4.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_895 -1.1 -3.6 Transcriptional regulator, HxlR family compare
Pf6N2E2_2467 -1.1 -2.2 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_4052 -1.1 -1.5 FIG00955481: hypothetical protein compare
Pf6N2E2_5841 -1.0 -1.3 GlcG protein compare
Pf6N2E2_4797 -1.0 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1774 -1.0 -1.7 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1034 -1.0 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_453 -1.0 -2.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_447 -1.0 -2.8 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_3039 -1.0 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1043 -1.0 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_2887 -1.0 -3.5 Aldose 1-epimerase compare
Pf6N2E2_1283 -1.0 -2.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3074 -1.0 -1.7 FIG00960973: hypothetical protein compare
Pf6N2E2_4362 -1.0 -1.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2012 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_638 -1.0 -1.8 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4147 -1.0 -5.2 Fused spore maturation proteins A and B compare
Pf6N2E2_3040 -0.9 -4.2 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2296 -0.9 -2.7 FIG00954767: hypothetical protein compare
Pf6N2E2_160 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_3677 -0.9 -6.6 Sensory box/GGDEF family protein compare
Pf6N2E2_2469 -0.9 -3.7 hypothetical protein compare
Pf6N2E2_2699 -0.9 -5.0 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_122 -0.9 -1.0 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5555 -0.9 -1.4 Cold shock protein CspA compare
Pf6N2E2_2129 -0.9 -2.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2217 -0.9 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4454 -0.9 -3.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_586 -0.9 -4.8 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_2574 -0.9 -1.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_4068 -0.9 -6.7 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_2640 -0.9 -1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2840 -0.9 -4.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5059 -0.9 -4.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4418 -0.9 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3666 -0.9 -4.7 InaA protein compare
Pf6N2E2_5219 -0.9 -4.2 FIG140336: TPR domain protein compare
Pf6N2E2_3504 -0.9 -5.2 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2468 -0.9 -4.3 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Pf6N2E2_906 -0.9 -1.6 ISPpu14, transposase Orf2 compare
Pf6N2E2_4609 -0.8 -3.7 UPF0301 protein YqgE compare
Pf6N2E2_4843 -0.8 -3.5 FIG00956941: hypothetical protein compare
Pf6N2E2_600 -0.8 -1.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_1656 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_529 -0.8 -3.8 FIG00954439: hypothetical protein compare
Pf6N2E2_828 -0.8 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5428 -0.8 -3.6 DNA recombination and repair protein RecO compare
Pf6N2E2_1933 -0.8 -2.4 TcuR: regulates tcuABC genes used in utilization of tricarballylate compare
Pf6N2E2_5232 -0.8 -4.9 Cell division inhibitor compare
Pf6N2E2_1758 -0.8 -1.5 Transcriptional regulator, MarR family compare
Pf6N2E2_4999 -0.8 -3.1 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3839 -0.8 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1027 -0.8 -1.6 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_3144 -0.8 -3.8 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_1617 -0.8 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2189 -0.8 -2.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_88 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_5664 -0.8 -3.6 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_3015 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_5406 -0.8 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_4584 -0.8 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4121 -0.8 -2.7 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_919 -0.8 -1.0 FIG00954373: hypothetical protein compare
Pf6N2E2_1074 -0.8 -1.7 FIG00953356: hypothetical protein compare
Pf6N2E2_4479 -0.8 -2.6 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_1545 -0.8 -2.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3748 -0.8 -4.1 Cytochrome B561 compare
Pf6N2E2_2681 -0.8 -2.9 3-phosphoglycerate kinase compare
Pf6N2E2_3477 -0.8 -1.0 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3841 -0.8 -4.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5494 -0.8 -3.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2181 -0.8 -1.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_6065 -0.8 -1.6 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_619 -0.8 -1.8 Exonuclease SbcD compare
Pf6N2E2_3603 -0.8 -3.8 FIG003573: hypothetical protein compare
Pf6N2E2_3901 -0.8 -2.0 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_2552 -0.8 -2.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4438 -0.7 -3.4 hypothetical protein compare
Pf6N2E2_3300 -0.7 -1.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2344 -0.7 -3.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4620 -0.7 -2.7 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf6N2E2_5338 -0.7 -4.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2470 -0.7 -3.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_4392 -0.7 -1.1 Translation initiation inhibitor compare
Pf6N2E2_291 -0.7 -2.6 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_3499 -0.7 -1.2 Permeases of the major facilitator superfamily compare
Pf6N2E2_786 -0.7 -2.5 Type-1 fimbrial protein, A chain precursor compare
Pf6N2E2_3637 -0.7 -4.7 yqiA-like hydrolase, affects the cell envelope (from data) compare
Pf6N2E2_4733 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_841 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_3835 -0.7 -1.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_1110 -0.7 -2.7 FIG00964414: hypothetical protein compare
Pf6N2E2_913 -0.7 -2.4 FIG00958137: hypothetical protein compare
Pf6N2E2_2476 -0.7 -2.1 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_1516 -0.7 -2.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_5723 -0.7 -4.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5339 -0.7 -2.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_451 -0.7 -1.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_1085 -0.7 -1.7 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2827 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_2200 -0.7 -1.0 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_1281 -0.7 -1.8 ATPase involved in DNA repair compare


Specific Phenotypes

For 5 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas fluorescens FW300-N2E2

For stress Fusidic acid sodium salt across organisms