Experiment set7IT022 for Pseudomonas syringae pv. syringae B728a

Compare to:

L-Malic acid carbon source

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.3 -3.6 anthranilate synthase, component II compare
Psyr_4113 -5.1 -6.0 LppC putative lipoprotein compare
Psyr_0402 -4.7 -14.0 Peptidoglycan glycosyltransferase compare
Psyr_4894 -4.7 -5.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_1983 -4.6 -4.4 3-isopropylmalate dehydratase, large subunit compare
Psyr_4897 -4.5 -4.3 imidazoleglycerol-phosphate dehydratase compare
Psyr_4070 -4.5 -4.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4580 -4.3 -4.2 anthranilate phosphoribosyltransferase compare
Psyr_0576 -4.2 -5.0 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4609 -4.2 -11.4 anthranilate synthase, component I compare
Psyr_4133 -4.2 -11.4 histidinol dehydrogenase compare
Psyr_1663 -4.2 -2.9 phosphoribosylanthranilate isomerase compare
Psyr_1985 -4.1 -7.3 3-isopropylmalate dehydrogenase compare
Psyr_0411 -4.1 -14.4 glutamate synthase (NADPH) large subunit compare
Psyr_0847 -4.1 -6.2 acetolactate synthase, small subunit compare
Psyr_3690 -4.0 -5.9 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4369 -4.0 -4.7 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4126 -3.9 -12.9 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_1984 -3.9 -3.7 3-isopropylmalate dehydratase, small subunit compare
Psyr_4134 -3.9 -9.9 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0557 -3.9 -4.6 phosphoserine phosphatase compare
Psyr_2462 -3.8 -4.5 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_4852 -3.8 -6.8 D-3-phosphoglycerate dehydrogenase compare
Psyr_0412 -3.8 -11.3 glutamate synthase (NADPH) small subunit compare
Psyr_4128 -3.8 -8.6 sulfate adenylyltransferase subunit 2 compare
Psyr_0386 -3.7 -6.6 phosphoribosyl-AMP cyclohydrolase compare
Psyr_4132 -3.7 -11.5 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0704 -3.7 -8.2 glutamate 5-kinase compare
Psyr_0936 -3.7 -9.5 Glycosyl transferase, group 1 compare
Psyr_0951 -3.7 -4.9 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_3637 -3.7 -12.6 Glycosyl transferase, family 4 compare
Psyr_0846 -3.7 -11.6 acetolactate synthase, large subunit compare
Psyr_4069 -3.7 -9.6 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3691 -3.5 -8.0 conserved hypothetical protein compare
Psyr_0469 -3.5 -10.7 dihydroxyacid dehydratase compare
Psyr_0033 -3.5 -3.4 tryptophan synthase, alpha chain compare
Psyr_1350 -3.5 -4.1 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0474 -3.5 -9.6 homoserine O-acetyltransferase compare
Psyr_0916 -3.5 -7.7 GDP-mannose 4,6-dehydratase compare
Psyr_1269 -3.4 -2.3 phosphoribosylformylglycinamidine synthase compare
Psyr_2071 -3.4 -3.1 outer membrane lipoprotein OprI compare
Psyr_4340 -3.4 -5.6 phosphomethylpyrimidine kinase, putative compare
Psyr_0848 -3.4 -10.1 ketol-acid reductoisomerase compare
Psyr_1544 -3.4 -4.5 SirA-like protein compare
Psyr_4290 -3.4 -10.7 conserved domain protein compare
Psyr_1669 -3.3 -8.9 O-succinylhomoserine sulfhydrylase compare
Psyr_4844 -3.3 -9.9 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_0473 -3.3 -6.6 Methionine biosynthesis MetW compare
Psyr_4896 -3.3 -6.8 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4270 -3.3 -8.9 serine hydroxymethyltransferase compare
Psyr_3955 -3.3 -3.8 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_0919 -3.2 -10.9 Chromosome segregation ATPase-like protein compare
Psyr_4125 -3.2 -5.0 Protein of unknown function DUF1043 compare
Psyr_1268 -3.2 -6.6 extracellular solute-binding protein, family 3:SLT compare
Psyr_4893 -3.2 -1.9 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0014 -3.1 -4.7 lipid A biosynthesis acyltransferase compare
Psyr_4842 -3.1 -7.9 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_1668 -3.1 -6.6 amidophosphoribosyltransferase compare
Psyr_0034 -3.1 -3.0 tryptophan synthase, beta chain compare
Psyr_0920 -3.0 -14.0 Glycosyl transferase, group 1 compare
Psyr_0544 -3.0 -11.5 hydroxymethylpyrimidine synthase compare
Psyr_0534 -3.0 -14.7 membrane protein, putative compare
Psyr_0208 -3.0 -8.0 endoribonuclease L-PSP compare
Psyr_0168 -3.0 -7.5 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_4730 -2.8 -3.6 FecR protein compare
Psyr_0827 -2.7 -4.7 pantothenate synthetase compare
Psyr_2192 -2.7 -7.2 transcriptional regulator, TetR family compare
Psyr_4144 -2.7 -1.4 Protein of unknown function DUF1239 compare
Psyr_4407 -2.7 -2.6 phosphoribosylamine--glycine ligase compare
Psyr_4341 -2.7 -8.2 thiamine-phosphate diphosphorylase compare
Psyr_3008 -2.7 -4.9 Undecaprenyl-diphosphatase compare
Psyr_3174 -2.7 -5.1 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_2461 -2.7 -3.3 Uncharacterized conserved protein UCP030820 compare
Psyr_0815 -2.7 -6.8 nicotinate-nucleotide pyrophosphorylase (carboxylating) compare
Psyr_3640 -2.7 -3.8 conserved hypothetical protein compare
Psyr_3636 -2.6 -11.3 Polysaccharide biosynthesis protein CapD compare
Psyr_1140 -2.6 -2.5 Disulfide bond formation protein DsbB compare
Psyr_1250 -2.6 -4.0 conserved hypothetical protein compare
Psyr_0915 -2.5 -10.2 NAD-dependent epimerase/dehydratase compare
Psyr_2077 -2.5 -6.3 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_4091 -2.5 -6.1 8-oxo-dGTPase compare
Psyr_1542 -2.5 -10.0 quinolinate synthetase compare
Psyr_4408 -2.5 -7.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_1575 -2.5 -12.9 conserved hypothetical protein compare
Psyr_0531 -2.5 -2.8 LmbE-like protein compare
Psyr_3688 -2.4 -2.5 conserved hypothetical protein compare
Psyr_0914 -2.4 -10.6 Glycosyl transferase, group 1 compare
Psyr_1257 -2.4 -9.2 2-isopropylmalate synthase compare
Psyr_4740 -2.4 -6.1 thiazole-phosphate synthase compare
Psyr_3128 -2.4 -6.7 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0533 -2.4 -5.3 conserved hypothetical protein compare
Psyr_1599 -2.4 -12.9 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A compare
Psyr_4361 -2.3 -3.1 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3045 -2.3 -9.0 PqiB family protein compare
Psyr_3127 -2.3 -4.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1864 -2.3 -4.4 spermidine synthase compare
Psyr_1373 -2.3 -3.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3046 -2.3 -6.9 Protein of unknown function DUF330 compare
Psyr_3043 -2.3 -5.3 Paraquat-inducible protein A compare
Psyr_0268 -2.3 -2.9 DSBA oxidoreductase compare
Psyr_0918 -2.3 -7.1 ABC transporter compare
Psyr_4687 -2.2 -5.6 biotin synthase compare
Psyr_5085 -2.2 -11.5 Twin-arginine translocation pathway signal compare
Psyr_0532 -2.2 -4.9 conserved hypothetical protein compare
Psyr_4229 -2.2 -12.6 ABC transporter:ABC transporter, N-terminal compare
Psyr_0937 -2.2 -9.4 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) compare
Psyr_4991 -2.2 -1.5 hypothetical protein compare
Psyr_4843 -2.2 -5.7 NUDIX hydrolase compare
Psyr_1748 -2.1 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1417 -2.1 -6.7 TPR repeat protein compare
Psyr_3044 -2.1 -6.2 Paraquat-inducible protein A compare
Psyr_3947 -2.1 -3.0 Methyltransferase, putative compare
Psyr_2070 -2.0 -11.5 ErfK/YbiS/YcfS/YnhG compare
Psyr_2072 -2.0 -9.3 conserved hypothetical protein compare
Psyr_0383 -2.0 -1.8 Twin-arginine translocation protein TatB compare
Psyr_4151 -2.0 -1.3 Phosphocarrier HPr protein compare
Psyr_0377 -1.9 -7.2 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_3675 -1.9 -3.1 adenosylcobinamide kinase compare
Psyr_0826 -1.9 -5.8 glucose-6-phosphate isomerase compare
Psyr_3709 -1.9 -3.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0219 -1.9 -7.7 phosphomannomutase compare
Psyr_1720 -1.9 -4.0 Protein of unknown function DUF58 compare
Psyr_0849 -1.8 -8.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_2582 -1.8 -10.2 TonB-dependent siderophore receptor compare
Psyr_3289 -1.8 -3.3 3-ketoacyl-CoA thiolase compare
Psyr_0917 -1.8 -3.6 ABC-2 compare
Psyr_2591 -1.8 -6.0 transport system permease protein compare
Psyr_1372 -1.8 -5.2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3563 -1.8 -5.5 arginine succinyltransferase compare
Psyr_3324 -1.8 -4.6 transcriptional regulator, TetR family compare
Psyr_0721 -1.7 -6.4 glycine oxidase compare
Psyr_0479 -1.7 -4.6 NLP/P60 compare
Psyr_3290 -1.7 -4.1 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_3013 -1.7 -2.1 magnesium chelatase subunit ChlD compare
Psyr_1721 -1.7 -4.5 moxR protein, putative compare
Psyr_0378 -1.7 -7.4 Glycosyl transferase, family 2 compare
Psyr_4575 -1.7 -9.9 adenosylmethionine decarboxylase proenzyme compare
Psyr_0350 -1.6 -2.8 ABC transporter compare
Psyr_1251 -1.6 -3.7 quinoprotein compare
Psyr_2502 -1.6 -4.1 conserved hypothetical protein compare
Psyr_3287 -1.6 -3.0 DNA topoisomerase I compare
Psyr_1394 -1.6 -9.6 potassium transporter compare
Psyr_4673 -1.6 -1.8 Coenzyme PQQ synthesis D compare
Psyr_4613 -1.6 -9.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1751 -1.5 -3.3 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0385 -1.5 -3.0 phosphoribosyl-ATP pyrophosphatase compare
Psyr_2592 -1.5 -5.0 transport system permease protein compare
Psyr_2593 -1.5 -3.4 ABC transporter compare
Psyr_2973 -1.5 -2.6 Glyoxalase I compare
Psyr_4612 -1.5 -5.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0524 -1.5 -3.4 Lipopolysaccharide kinase compare
Psyr_2980 -1.5 -3.2 UDP-glucose pyrophosphorylase compare
Psyr_4161 -1.5 -2.3 Rod shape-determining protein MreD compare
Psyr_3459 -1.5 -2.3 Helix-turn-helix, Fis-type compare
Psyr_3564 -1.5 -6.2 arginine succinyltransferase compare
Psyr_4362 -1.5 -2.6 Rare lipoprotein A compare
Psyr_3014 -1.5 -2.5 protoporphyrin IX magnesium-chelatase compare
Psyr_3554 -1.5 -1.6 Carbon storage regulator compare
Psyr_0376 -1.5 -2.5 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_3708 -1.5 -6.5 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_4572 -1.5 -6.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_4055 -1.4 -1.9 conserved domain protein compare
Psyr_3673 -1.4 -2.3 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_3581 -1.4 -4.5 ribosomal large subunit pseudouridine synthase B compare
Psyr_3707 -1.4 -6.4 Sodium:dicarboxylate symporter conserved
Psyr_4141 -1.4 -4.3 ABC transporter compare
Psyr_0529 -1.4 -3.3 Glycosyl transferase, group 1 compare
Psyr_0215 -1.4 -7.9 Exodeoxyribonuclease III xth compare
Psyr_0835 -1.4 -4.4 transcriptional regulator, TraR/DksA family compare
Psyr_0444 -1.4 -1.1 Malonate decarboxylase delta subunit compare
Psyr_3179 -1.4 -2.5 DNA translocase FtsK compare
Psyr_4898 -1.4 -6.8 aromatic amino acid aminotransferase apoenzyme compare
Psyr_2921 -1.4 -1.5 ADP-ribosylglycohydrolase compare
Psyr_1651 -1.4 -4.8 Protein of unknown function DUF175 compare
Psyr_1716 -1.4 -3.7 conserved hypothetical protein compare
Psyr_4009 -1.4 -5.5 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3450 -1.4 -3.7 Hpt compare
Psyr_0812 -1.3 -3.8 stress protein compare
Psyr_4278 -1.3 -2.3 regulatory protein, LuxR compare
Psyr_3674 -1.3 -2.3 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_1530 -1.3 -2.3 hypothetical protein compare
Psyr_2244 -1.3 -1.9 DNA topoisomerase III compare
Psyr_4089 -1.3 -4.7 PAS compare
Psyr_1779 -1.3 -1.8 hypothetical protein compare
Psyr_0579 -1.3 -7.9 RNAse R compare
Psyr_2251 -1.2 -1.6 Phosphonate metabolism PhnG compare
Psyr_4938 -1.2 -5.6 Helix-turn-helix, Fis-type conserved
Psyr_4224 -1.2 -0.9 conserved hypothetical protein compare
Psyr_5133 -1.2 -2.2 tRNA modification GTPase trmE compare
Psyr_1666 -1.2 -3.0 Sporulation related protein compare
Psyr_0232 -1.2 -6.8 gamma-glutamylputrescine oxidase compare
Psyr_0054 -1.2 -5.2 alginate regulatory protein AlgR3 compare
Psyr_4117 -1.2 -5.3 Stringent starvation protein B compare
Psyr_0373 -1.2 -2.3 CDS compare
Psyr_2590 -1.2 -2.5 Periplasmic binding protein compare
Psyr_4940 -1.2 -2.3 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_3701 -1.2 -1.9 thioredoxin, putative compare
Psyr_1600 -1.2 -3.3 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_5043 -1.2 -3.6 Thioesterase superfamily compare
Psyr_3374 -1.2 -2.4 Heavy metal response regulator compare


Specific Phenotypes

For 42 genes in this experiment

For carbon source L-Malic acid in Pseudomonas syringae pv. syringae B728a

For carbon source L-Malic acid across organisms