Experiment set7IT022 for Methanococcus maripaludis S2

Compare to:

Iron limitation, H2 media

200 most important genes:

  gene name fitness t score description  
MMP_RS01545 -4.1 -2.0 CBS domain-containing protein compare
MMP_RS01175 -3.4 -8.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03315 -3.4 -2.2 ferrous iron transport protein A compare
MMP_RS03015 -3.3 -15.5 GTP 3' 8-cyclase MoaA compare
MMP_RS06355 -3.3 -5.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01020 -3.0 -2.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06400 -2.9 -2.8 4Fe-4S binding protein compare
MMP_RS02145 -2.9 -11.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS02010 -2.8 -15.5 PHP domain-containing protein compare
MMP_RS08715 -2.8 -2.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01265 -2.8 -3.4 hypothetical protein compare
MMP_RS07735 -2.8 -1.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07390 -2.7 -3.9 cell division protein FtsZ compare
MMP_RS07635 -2.7 -11.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06285 -2.7 -5.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02195 -2.7 -8.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02240 -2.6 -4.8 methanogenesis marker 7 protein compare
MMP_RS05515 -2.6 -10.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07005 -2.5 -1.2 4Fe-4S binding protein compare
MMP_RS03400 -2.5 -5.6 archease compare
MMP_RS00040 -2.5 -6.1 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06350 -2.4 -12.3 HesA/MoeB/ThiF family protein compare
MMP_RS08300 -2.4 -1.9 metal-sulfur cluster assembly factor compare
MMP_RS08745 -2.3 -8.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08720 -2.2 -3.5 4Fe-4S binding protein compare
MMP_RS08095 -2.1 -7.9 dethiobiotin synthase compare
MMP_RS03700 -2.1 -9.1 sodium:proton antiporter compare
MMP_RS04710 -2.1 -2.9 hypothetical protein compare
MMP_RS01225 -2.1 -6.6 DUF5379 domain-containing protein compare
MMP_RS08635 -2.1 -3.5 UbiA family prenyltransferase compare
MMP_RS01500 -2.1 -3.8 CBS domain-containing protein compare
MMP_RS01960 -2.1 -1.5 hypothetical protein compare
MMP_RS04500 -2.1 -13.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08105 -2.0 -9.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS05285 -2.0 -12.0 MMPL family transporter compare
MMP_RS00750 -2.0 -3.2 fumarate hydratase compare
MMP_RS08790 -2.0 -3.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS03110 -2.0 -6.9 glycosyltransferase family 2 protein compare
MMP_RS01885 -2.0 -12.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06120 -2.0 -3.3 UPF0147 family protein compare
MMP_RS01925 -2.0 -10.3 DUF1616 domain-containing protein compare
MMP_RS08435 -2.0 -3.8 Era-like GTP-binding protein compare
MMP_RS08100 -1.9 -9.0 8-amino-7-oxononanoate synthase compare
MMP_RS01385 -1.9 -1.1 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06895 -1.9 -2.5 selenocysteine-specific translation elongation factor compare
MMP_RS06370 -1.9 -5.0 biotin synthase BioB compare
MMP_RS01900 -1.9 -13.9 hypothetical protein compare
MMP_RS03435 -1.9 -2.5 ketol-acid reductoisomerase compare
MMP_RS01725 -1.9 -6.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS00695 -1.9 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03025 -1.9 -7.5 molybdenum cofactor guanylyltransferase compare
MMP_RS08440 -1.8 -4.4 cell division protein SepF compare
MMP_RS01955 -1.8 -6.3 hypothetical protein compare
MMP_RS07645 -1.8 -10.0 aldehyde dehydrogenase family protein compare
MMP_RS00515 -1.8 -1.4 DUF655 domain-containing protein compare
MMP_RS03205 -1.8 -2.7 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS05280 -1.8 -9.2 COG1361 S-layer family protein compare
MMP_RS06625 -1.8 -3.4 DNA primase compare
MMP_RS01890 -1.8 -5.0 nucleotide sugar dehydrogenase compare
MMP_RS01755 -1.8 -2.6 DUF2097 domain-containing protein compare
MMP_RS04685 -1.8 -5.0 DUF126 domain-containing protein compare
MMP_RS01610 -1.8 -6.0 hypothetical protein compare
MMP_RS03035 -1.7 -4.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06295 -1.7 -7.8 methanogenesis marker 14 protein compare
MMP_RS01880 -1.7 -8.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS04780 -1.7 -5.1 ribonuclease P compare
MMP_RS01875 -1.7 -11.2 N-acetyltransferase compare
MMP_RS01830 -1.7 -2.0 tRNA-Val compare
MMP_RS03600 -1.6 -2.4 triose-phosphate isomerase compare
MMP_RS03640 -1.6 -3.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07380 -1.6 -3.4 transcription elongation factor Spt5 compare
MMP_RS05555 -1.6 -2.3 DUF4040 domain-containing protein compare
MMP_RS06730 -1.6 -2.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS08210 -1.6 -3.7 phosphatidylglycerophosphatase A compare
MMP_RS04890 -1.6 -1.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08650 -1.6 -3.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07420 -1.6 -5.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06110 -1.6 -4.3 ATP-dependent protease LonB compare
MMP_RS07845 -1.6 -1.9 LL-diaminopimelate aminotransferase compare
MMP_RS04605 -1.6 -6.5 cobalt ECF transporter T component CbiQ compare
MMP_RS03485 -1.6 -5.4 TIGR00267 family protein compare
MMP_RS08460 -1.6 -3.5 proteasome-activating nucleotidase compare
MMP_RS07755 -1.6 -1.8 DUF555 domain-containing protein compare
MMP_RS01905 -1.6 -11.1 glycosyltransferase compare
MMP_RS05550 -1.6 -1.1 cation:proton antiporter compare
MMP_RS06900 -1.5 -4.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS01005 -1.5 -1.9 riboflavin synthase compare
MMP_RS01800 -1.5 -5.2 TIGR00303 family protein compare
MMP_RS07955 -1.5 -5.9 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS00320 -1.5 -2.9 class I SAM-dependent methyltransferase compare
MMP_RS06865 -1.5 -1.7 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02135 -1.5 -4.2 DUF5612 domain-containing protein compare
MMP_RS07525 -1.5 -6.5 4Fe-4S binding protein compare
MMP_RS07200 -1.5 -5.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS06670 -1.4 -5.7 glucose-6-phosphate isomerase compare
MMP_RS07075 -1.4 -5.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS01380 -1.4 -5.5 PHP domain-containing protein compare
MMP_RS02345 -1.4 -4.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06725 -1.4 -9.2 hypothetical protein compare
MMP_RS04585 -1.4 -8.5 AIR synthase related protein compare
MMP_RS04775 -1.4 -3.8 adenosylhomocysteinase compare
MMP_RS03475 -1.4 -1.1 hypothetical protein compare
MMP_RS00810 -1.4 -7.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07195 -1.4 -7.6 M20 family metallo-hydrolase compare
MMP_RS02280 -1.3 -1.2 DUF211 domain-containing protein compare
MMP_RS04900 -1.3 -11.6 hypothetical protein compare
MMP_RS05250 -1.3 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00305 -1.3 -1.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS03445 -1.3 -1.3 methanogenesis marker 17 protein compare
MMP_RS08195 -1.3 -8.4 hypothetical protein compare
MMP_RS01220 -1.3 -6.1 hypothetical protein compare
MMP_RS00110 -1.3 -3.5 hypothetical protein compare
MMP_RS05540 -1.3 -3.0 hypothetical protein compare
MMP_RS00895 -1.3 -3.0 hypothetical protein compare
MMP_RS06020 -1.3 -4.7 archaeoflavoprotein AfpA compare
MMP_RS08820 -1.3 -4.2 hypothetical protein compare
MMP_RS07090 -1.3 -7.6 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01915 -1.3 -9.9 DUF354 domain-containing protein compare
MMP_RS01910 -1.3 -8.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03580 -1.3 -2.6 signal recognition particle-docking protein FtsY compare
MMP_RS01365 -1.2 -2.6 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS07710 -1.2 -7.2 cell division protein FtsZ compare
MMP_RS01975 -1.2 -9.5 hypothetical protein compare
MMP_RS00520 -1.2 -1.4 RNA polymerase Rpb4 family protein compare
MMP_RS01970 -1.2 -9.2 TIGR04279 domain-containing protein compare
MMP_RS07750 -1.2 -4.4 DUF357 domain-containing protein compare
MMP_RS03095 -1.2 -4.8 diphthine synthase compare
MMP_RS01895 -1.2 -9.0 flippase compare
MMP_RS01795 -1.2 -1.9 methanogenesis marker 6 protein compare
MMP_RS07730 -1.2 -2.4 pyruvate synthase subunit beta compare
MMP_RS01240 -1.2 -1.2 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS06885 -1.2 -3.3 50S ribosome-binding GTPase compare
MMP_RS07365 -1.1 -7.9 2-phosphoglycerate kinase compare
MMP_RS06940 -1.1 -3.5 polyprenyl diphosphate synthase compare
MMP_RS06475 -1.1 -3.6 FAD-dependent oxidoreductase compare
MMP_RS00915 -1.1 -5.5 DUF116 domain-containing protein compare
MMP_RS06270 -1.1 -5.8 TIGR00300 family protein compare
MMP_RS02245 -1.1 -3.6 hypothetical protein compare
MMP_RS00985 -1.1 -5.6 CDC48 family AAA ATPase compare
MMP_RS00685 -1.1 -4.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01840 -1.1 -6.5 TIGR00289 family protein compare
MMP_RS05640 -1.1 -4.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06340 -1.1 -5.6 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS04485 -1.1 -8.5 putative beta-lysine N-acetyltransferase compare
MMP_RS04720 -1.1 -3.0 DedA family protein compare
MMP_RS09020 -1.1 -1.9 hypothetical protein compare
MMP_RS04955 -1.1 -4.4 DNA topoisomerase I compare
MMP_RS05845 -1.0 -2.0 tRNA-intron lyase compare
MMP_RS04870 -1.0 -3.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS00115 -1.0 -6.5 radical SAM protein compare
MMP_RS06840 -1.0 -1.1 DNA-directed RNA polymerase subunit N compare
MMP_RS01920 -1.0 -8.5 glycosyltransferase family 2 protein compare
MMP_RS00730 -1.0 -6.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS02875 -1.0 -5.8 chorismate pyruvate-lyase family protein compare
MMP_RS03420 -1.0 -1.7 acetolactate synthase small subunit compare
MMP_RS01440 -1.0 -6.3 NAAT family transporter compare
MMP_RS06105 -1.0 -4.8 hydrogenase maturation peptidase HycI compare
MMP_RS07820 -1.0 -3.2 UPF0104 family protein compare
MMP_RS08595 -1.0 -1.3 flagellar protein C compare
MMP_RS03080 -1.0 -2.3 universal stress protein compare
MMP_RS05930 -1.0 -1.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS02130 -1.0 -3.8 zinc metalloprotease HtpX compare
MMP_RS05815 -1.0 -1.5 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00300 -1.0 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06980 -1.0 -5.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS05425 -0.9 -4.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05245 -0.9 -6.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07875 -0.9 -3.4 hypothetical protein compare
MMP_RS07575 -0.9 -2.9 RNA ligase partner protein compare
MMP_RS00720 -0.9 -5.7 metal-dependent hydrolase compare
MMP_RS06630 -0.9 -0.9 UPF0058 family protein compare
MMP_RS05265 -0.9 -1.5 2-isopropylmalate synthase compare
MMP_RS04850 -0.9 -7.4 UPF0254 family protein compare
MMP_RS06395 -0.9 -2.8 ThiF family adenylyltransferase compare
MMP_RS01665 -0.9 -3.0 DUF2111 domain-containing protein compare
MMP_RS01700 -0.9 -0.8 dihydroxy-acid dehydratase compare
MMP_RS05920 -0.9 -0.4 50S ribosomal protein L37e compare
MMP_RS07695 -0.9 -4.2 DUF3236 domain-containing protein compare
MMP_RS03590 -0.9 -3.5 METTL5 family protein compare
MMP_RS01045 -0.9 -4.4 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS07605 -0.9 -2.3 diadenylate cyclase compare
MMP_RS03140 -0.8 -5.7 hypothetical protein compare
MMP_RS07540 -0.8 -4.0 CBS domain-containing protein compare
MMP_RS04695 -0.8 -4.2 selenide water dikinase SelD compare
MMP_RS08645 -0.8 -4.2 UPF0179 family protein compare
MMP_RS02930 -0.8 -2.2 class I SAM-dependent methyltransferase compare
MMP_RS04620 -0.8 -4.1 cobalt transporter CbiM compare
MMP_RS02900 -0.8 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08155 -0.8 -4.0 hypothetical protein compare
MMP_RS05580 -0.8 -6.6 glycosyltransferase compare
MMP_RS01940 -0.8 -3.6 MoxR family ATPase compare
MMP_RS06310 -0.8 -3.4 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS00315 -0.8 -3.8 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS05925 -0.8 -2.5 small nuclear ribonucleoprotein compare
MMP_RS07545 -0.8 -0.9 HTH domain-containing protein compare
MMP_RS00735 -0.8 -3.0 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS08165 -0.8 -2.5 phosphoglycerate dehydrogenase compare
MMP_RS07190 -0.8 -5.0 chromosome segregation protein SMC compare
MMP_RS05290 -0.7 -3.8 TetR/AcrR family transcriptional regulator compare
MMP_RS08590 -0.7 -2.9 flagellin compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms