Experiment set7IT022 for Methanococcus maripaludis S2

Compare to:

Iron limitation, H2 media

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS00185 +0.9 7.0 potassium channel protein compare
MMP_RS07815 +0.8 1.6 DUF2120 domain-containing protein compare
MMP_RS06720 +0.8 4.7 response regulator transcription factor compare
MMP_RS06715 +0.8 6.4 cache domain-containing protein compare
MMP_RS08310 +0.8 2.2 TMEM165/GDT1 family protein compare
MMP_RS03340 +0.7 0.9 ABC transporter ATP-binding protein compare
MMP_RS02290 +0.7 4.3 MBL fold metallo-hydrolase compare
MMP_RS06540 +0.7 2.7 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS06575 +0.7 2.8 fluoride efflux transporter CrcB compare
MMP_RS08455 +0.6 2.8 multiprotein bridging factor aMBF1 compare
MMP_RS00395 +0.6 1.2 MGMT family protein compare
MMP_RS08640 +0.6 3.6 TIM barrel protein compare
MMP_RS06015 +0.6 3.5 flavodoxin family protein compare
MMP_RS08990 +0.6 3.2 hypothetical protein compare
MMP_RS01525 +0.6 1.5 nucleoside-diphosphate kinase compare
MMP_RS00295 +0.6 0.8 gamma carbonic anhydrase family protein compare
MMP_RS08275 +0.5 3.7 hypothetical protein compare
MMP_RS02310 +0.5 1.2 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS00450 +0.5 1.2 4Fe-4S binding protein compare
MMP_RS06500 +0.5 3.2 ATP-binding protein compare
MMP_RS08280 +0.5 2.0 proteasome assembly chaperone family protein compare
MMP_RS01675 +0.5 1.3 hypothetical protein compare
MMP_RS07960 +0.5 3.3 sugar phosphate isomerase/epimerase compare
MMP_RS03785 +0.5 2.2 cupin domain-containing protein compare
MMP_RS02300 +0.5 2.0 NAD(P)H-dependent oxidoreductase compare
MMP_RS05695 +0.5 3.5 phospholipase D-like domain-containing protein compare
MMP_RS08485 +0.5 3.2 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS08405 +0.5 3.3 MFS transporter compare
MMP_RS08285 +0.5 2.5 serine/threonine protein kinase compare
MMP_RS05715 +0.5 3.5 hypothetical protein compare
MMP_RS07775 +0.5 2.7 alanine dehydrogenase compare
MMP_RS05835 +0.5 0.6 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS00400 +0.5 2.1 tributyrin esterase compare
MMP_RS01630 +0.4 2.8 N-glycosylase/DNA lyase compare
MMP_RS00655 +0.4 1.4 hypothetical protein compare
MMP_RS02770 +0.4 2.5 hypothetical protein compare
MMP_RS05675 +0.4 1.4 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS01685 +0.4 1.1 indolepyruvate oxidoreductase subunit beta compare
MMP_RS01055 +0.4 1.9 hypothetical protein compare
MMP_RS04145 +0.4 1.0 hypothetical protein compare
MMP_RS02705 +0.4 2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08665 +0.4 3.5 hypothetical protein compare
MMP_RS08700 +0.4 2.5 hypothetical protein compare
MMP_RS07620 +0.4 1.2 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS00375 +0.4 2.6 ammonium transporter compare
MMP_RS01115 +0.4 2.8 molybdopterin molybdotransferase MoeA compare
MMP_RS06965 +0.4 2.3 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS05975 +0.4 0.9 hypothetical protein compare
MMP_RS00335 +0.4 2.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS02815 +0.4 1.5 hypothetical protein compare
MMP_RS07970 +0.4 1.6 hypothetical protein compare
MMP_RS06325 +0.4 0.8 hypothetical protein compare
MMP_RS00155 +0.4 2.0 heavy metal-binding domain-containing protein compare
MMP_RS07550 +0.4 2.7 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS03305 +0.4 2.1 winged helix-turn-helix domain-containing protein compare
MMP_RS08070 +0.4 2.0 DUF2096 domain-containing protein compare
MMP_RS08400 +0.4 1.6 MJ0307 family thioredoxin compare
MMP_RS06660 +0.4 2.5 glycosyltransferase family 4 protein compare
MMP_RS00345 +0.4 1.7 DUF2666 domain-containing protein compare
MMP_RS06570 +0.4 1.1 DUF190 domain-containing protein compare
MMP_RS08350 +0.4 0.5 hypothetical protein compare
MMP_RS01620 +0.4 1.8 hypothetical protein compare
MMP_RS02510 +0.4 2.0 site-specific integrase compare
MMP_RS01570 +0.4 0.8 hypothetical protein compare
MMP_RS08480 +0.4 2.4 molybdate ABC transporter substrate-binding protein compare
MMP_RS00455 +0.4 2.0 orotate phosphoribosyltransferase-like protein compare
MMP_RS07835 +0.4 1.9 TldD/PmbA family protein compare
MMP_RS00660 +0.4 2.7 alkaline phosphatase family protein compare
MMP_RS08390 +0.3 1.8 DUF5400 domain-containing protein compare
MMP_RS04195 +0.3 1.5 flavodoxin compare
MMP_RS03965 +0.3 1.1 hypothetical protein compare
MMP_RS00570 +0.3 1.4 protein-L-isoaspartate O-methyltransferase compare
MMP_RS06490 +0.3 1.7 hypothetical protein compare
MMP_RS08750 +0.3 1.6 hypothetical protein compare
MMP_RS00120 +0.3 2.4 LysR family transcriptional regulator compare
MMP_RS08845 +0.3 2.4 archaellum operon transcriptional activator EarA family protein compare
MMP_RS00940 +0.3 2.1 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS00990 +0.3 1.0 hypothetical protein compare
MMP_RS08555 +0.3 1.2 hypothetical protein compare
MMP_RS05780 +0.3 2.5 multidrug resistance efflux transporter family protein compare
MMP_RS01490 +0.3 1.9 tetratricopeptide repeat protein compare
MMP_RS07615 +0.3 1.7 energy-coupling factor ABC transporter permease compare
MMP_RS04790 +0.3 2.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08380 +0.3 1.7 phosphatase PAP2 family protein compare
MMP_RS05985 +0.3 1.3 hypothetical protein compare
MMP_RS02425 +0.3 1.9 hypothetical protein compare
MMP_RS07350 +0.3 0.9 preprotein translocase subunit Sec61beta compare
MMP_RS06555 +0.3 1.1 cupin domain-containing protein compare
MMP_RS02680 +0.3 1.9 ABC transporter permease compare
MMP_RS06910 +0.3 1.8 RlmF-related methyltransferase compare
MMP_RS06300 +0.3 2.2 ABC transporter substrate-binding protein compare
MMP_RS08410 +0.3 1.4 DUF169 domain-containing protein compare
MMP_RS07840 +0.3 1.3 ribonuclease III compare
MMP_RS08850 +0.3 2.7 hypothetical protein compare
MMP_RS06930 +0.3 2.3 MBL fold metallo-hydrolase compare
MMP_RS08160 +0.3 1.9 EamA family transporter compare
MMP_RS01485 +0.3 1.7 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS01775 +0.3 0.6 TIGR00297 family protein compare
MMP_RS09030 +0.3 1.8 hypothetical protein compare
MMP_RS06045 +0.3 2.2 DNA polymerase compare
MMP_RS09065 +0.3 2.4 hypothetical protein compare
MMP_RS08260 +0.3 2.2 DUF99 family protein compare
MMP_RS04740 +0.3 1.2 DUF473 domain-containing protein compare
MMP_RS02385 +0.3 2.0 ATP-binding protein compare
MMP_RS01145 +0.3 2.1 ABC transporter ATP-binding protein compare
MMP_RS06280 +0.3 1.6 alpha-glucan family phosphorylase compare
MMP_RS08610 +0.3 2.2 flagellar protein F compare
MMP_RS02690 +0.3 1.7 FmdE family protein compare
MMP_RS05895 +0.3 2.3 metallophosphoesterase compare
MMP_RS01125 +0.3 1.7 thioredoxin family protein compare
MMP_RS01635 +0.3 1.9 thiamine pyrophosphate-dependent enzyme compare
MMP_RS06990 +0.3 1.2 CatB-related O-acetyltransferase compare
MMP_RS02595 +0.3 0.6 putative zinc-binding protein compare
MMP_RS02295 +0.3 2.1 TatD family hydrolase compare
MMP_RS01980 +0.3 2.2 trimeric intracellular cation channel family protein compare
MMP_RS07150 +0.3 1.7 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS08235 +0.3 1.0 hypothetical protein compare
MMP_RS04015 +0.3 0.8 hypothetical protein compare
MMP_RS06190 +0.3 1.5 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS06655 +0.3 2.2 glycoside hydrolase family 15 protein compare
MMP_RS07590 +0.3 2.2 hypothetical protein compare
MMP_RS06530 +0.3 1.4 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS02265 +0.3 1.1 nitroreductase family protein compare
MMP_RS00950 +0.3 1.0 site-2 protease family protein compare
MMP_RS00430 +0.3 0.7 hypothetical protein compare
MMP_RS08430 +0.3 1.7 HAD family hydrolase compare
MMP_RS01320 +0.3 1.3 hypothetical protein compare
MMP_RS01275 +0.3 1.4 class III signal peptide-containing protein compare
MMP_RS02375 +0.3 1.9 hypothetical protein compare
MMP_RS01130 +0.3 1.8 flavoprotein compare
MMP_RS03895 +0.3 1.0 hypothetical protein compare
MMP_RS07805 +0.3 1.5 ABC transporter permease compare
MMP_RS08245 +0.3 1.6 DUF4013 domain-containing protein compare
MMP_RS08620 +0.3 1.4 flagellar accessory protein FlaH compare
MMP_RS00235 +0.3 1.9 HDIG domain-containing protein compare
MMP_RS00385 +0.3 1.2 P-II family nitrogen regulator compare
MMP_RS08580 +0.3 0.6 flagellin compare
MMP_RS03555 +0.3 1.5 transcriptional regulator compare
MMP_RS08670 +0.2 1.5 metallophosphoesterase compare
MMP_RS05315 +0.2 0.7 hypothetical protein compare
MMP_RS07880 +0.2 1.2 AAA family ATPase compare
MMP_RS07715 +0.2 1.5 YfcE family phosphodiesterase compare
MMP_RS06225 +0.2 1.3 DNA double-strand break repair nuclease NurA compare
MMP_RS06155 +0.2 0.9 DUF4186 domain-containing protein compare
MMP_RS01640 +0.2 1.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS01985 +0.2 1.4 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS05790 +0.2 1.2 HDIG domain-containing protein compare
MMP_RS04520 +0.2 0.9 nucleoside deaminase compare
MMP_RS08625 +0.2 1.3 type II/IV secretion system ATPase subunit compare
MMP_RS08250 +0.2 1.5 pyruvate kinase compare
MMP_RS08325 +0.2 1.6 hypothetical protein compare
MMP_RS07915 +0.2 1.1 DUF4870 domain-containing protein compare
MMP_RS00630 +0.2 1.3 ECF transporter S component compare
MMP_RS02695 +0.2 1.3 formylmethanofuran dehydrogenase subunit A compare
MMP_RS07925 +0.2 1.0 haloacid dehalogenase compare
MMP_RS01065 +0.2 1.7 alpha/beta hydrolase compare
MMP_RS00975 +0.2 1.8 HD domain-containing protein compare
MMP_RS00800 +0.2 1.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS04610 +0.2 1.2 Dabb family protein compare
MMP_RS03320 +0.2 0.9 metal-dependent transcriptional regulator compare
MMP_RS02545 +0.2 1.3 hypothetical protein compare
MMP_RS00290 +0.2 1.1 hypothetical protein compare
MMP_RS02915 +0.2 1.3 amino acid ABC transporter permease compare
MMP_RS06465 +0.2 1.7 NERD domain-containing protein compare
MMP_RS00825 +0.2 1.2 fumarylacetoacetate hydrolase family protein compare
MMP_RS05795 +0.2 1.4 redox-regulated ATPase YchF compare
MMP_RS05965 +0.2 1.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS07415 +0.2 1.4 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS02320 +0.2 1.2 glutamate-cysteine ligase family protein compare
MMP_RS06050 +0.2 1.6 ZIP family metal transporter compare
MMP_RS06710 +0.2 1.1 selenium-binding protein compare
MMP_RS02475 +0.2 0.7 hypothetical protein compare
MMP_RS03215 +0.2 1.4 MBL fold metallo-hydrolase compare
MMP_RS08225 +0.2 1.3 RimK family alpha-L-glutamate ligase compare
MMP_RS05995 +0.2 1.7 FprA family A-type flavoprotein compare
MMP_RS00285 +0.2 1.3 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS06440 +0.2 1.1 CBS domain-containing protein compare
MMP_RS06860 +0.2 0.5 4Fe-4S binding protein compare
MMP_RS06115 +0.2 1.4 class II aldolase/adducin family protein compare
MMP_RS04990 +0.2 1.5 aquaporin family protein compare
MMP_RS03885 +0.2 1.3 tyrosine-type recombinase/integrase compare
MMP_RS05470 +0.2 1.5 DUF523 and DUF1722 domain-containing protein compare
MMP_RS04105 +0.2 1.2 MarR family transcriptional regulator compare
MMP_RS02380 +0.2 0.9 ATP-binding protein compare
MMP_RS06185 +0.2 0.8 thermonuclease family protein compare
MMP_RS02585 +0.2 1.7 methyl-accepting chemotaxis protein compare
MMP_RS07155 +0.2 1.4 MFS transporter compare
MMP_RS00435 +0.2 1.4 CPBP family intramembrane metalloprotease compare
MMP_RS04735 +0.2 1.0 tautomerase family protein compare
MMP_RS07130 +0.2 1.4 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS04055 +0.2 0.5 hypothetical protein compare
MMP_RS07185 +0.2 1.4 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08085 +0.2 1.4 hypothetical protein compare
MMP_RS06100 +0.2 1.5 GNAT family N-acetyltransferase compare
MMP_RS05270 +0.2 1.4 PEGA domain-containing protein compare
MMP_RS05785 +0.2 1.4 ATP-binding protein compare
MMP_RS05905 +0.2 1.3 undecaprenyl-diphosphate phosphatase compare
MMP_RS00390 +0.2 1.3 ammonium transporter compare
MMP_RS00855 +0.2 1.3 DUF367 family protein compare
MMP_RS05095 +0.2 1.1 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms