Experiment set7IT021 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chloride 600 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.7 -4.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4071 -5.0 -5.9 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4584 -4.8 -4.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4353 -4.8 -6.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_42 -4.7 -5.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2675 -4.4 -1.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4585 -4.3 -17.0 Cell division protein FtsX compare
Pf6N2E2_5956 -4.3 -8.2 FIG004453: protein YceG like compare
Pf6N2E2_4162 -4.2 -2.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_813 -4.2 -4.9 Response regulator compare
Pf6N2E2_2258 -4.1 -11.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3885 -4.0 -3.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_241 -4.0 -1.3 hypothetical protein compare
Pf6N2E2_5430 -4.0 -11.9 Transglycosylase, Slt family compare
Pf6N2E2_3617 -4.0 -7.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3351 -3.8 -6.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2507 -3.8 -7.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2756 -3.8 -8.7 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3834 -3.7 -8.9 Lipoprotein NlpD compare
Pf6N2E2_4152 -3.7 -8.7 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_3062 -3.7 -5.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3332 -3.6 -6.6 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_1545 -3.6 -5.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4638 -3.6 -4.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5704 -3.5 -6.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5150 -3.4 -8.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2509 -3.4 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3770 -3.4 -3.3 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_5103 -3.4 -1.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4416 -3.4 -4.0 Tyrosine recombinase XerC compare
Pf6N2E2_4187 -3.4 -5.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2870 -3.4 -5.5 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_3460 -3.3 -3.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2217 -3.3 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5006 -3.3 -10.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5261 -3.2 -1.5 FIG00956983: hypothetical protein compare
Pf6N2E2_2825 -3.2 -4.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4803 -3.2 -2.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4352 -3.1 -4.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3829 -3.1 -4.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_5160 -3.1 -1.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3074 -3.1 -2.0 FIG00960973: hypothetical protein compare
Pf6N2E2_2278 -3.1 -16.2 Transcription-repair coupling factor compare
Pf6N2E2_4206 -3.0 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2508 -3.0 -5.7 hypothetical protein compare
Pf6N2E2_4369 -3.0 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5703 -3.0 -4.5 outer membrane protein H1 compare
Pf6N2E2_2506 -3.0 -14.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_144 -3.0 -14.8 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5714 -2.9 -3.1 Flavoprotein WrbA compare
Pf6N2E2_3330 -2.9 -9.4 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_1932 -2.9 -7.3 Transcriptional regulator, IclR family compare
Pf6N2E2_3333 -2.9 -8.9 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf6N2E2_3969 -2.9 -1.8 Membrane-fusion protein compare
Pf6N2E2_1293 -2.8 -1.9 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_5027 -2.8 -8.1 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_2219 -2.7 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4612 -2.7 -6.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2425 -2.7 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5536 -2.7 -1.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2938 -2.7 -4.6 Outer membrane lipoprotein compare
Pf6N2E2_156 -2.6 -2.8 Carbon storage regulator compare
Pf6N2E2_3095 -2.6 -1.4 hypothetical protein compare
Pf6N2E2_3027 -2.5 -1.7 Baseplate assembly protein V compare
Pf6N2E2_5001 -2.5 -2.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_145 -2.5 -7.6 putative exported protein compare
Pf6N2E2_818 -2.5 -7.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2510 -2.4 -5.2 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_133 -2.4 -3.2 hypothetical protein compare
Pf6N2E2_2022 -2.4 -5.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5425 -2.4 -1.5 hypothetical protein compare
Pf6N2E2_3331 -2.3 -10.5 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation conserved
Pf6N2E2_5406 -2.3 -3.0 FIG00958224: hypothetical protein compare
Pf6N2E2_3833 -2.3 -5.1 hypothetical protein compare
Pf6N2E2_4415 -2.3 -2.6 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_3607 -2.3 -8.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5520 -2.2 -7.1 Sensory box histidine kinase compare
Pf6N2E2_5342 -2.2 -3.2 21 kDa hemolysin precursor compare
Pf6N2E2_2074 -2.2 -1.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5534 -2.2 -5.5 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4454 -2.2 -6.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2824 -2.1 -7.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_447 -2.1 -3.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2869 -2.1 -1.8 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3282 -2.1 -2.5 FIG005080: Possible exported protein compare
Pf6N2E2_3077 -2.1 -4.3 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_2753 -2.1 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_815 -2.1 -8.0 Signal transduction histidine kinase compare
Pf6N2E2_5316 -2.0 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5242 -2.0 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_6001 -2.0 -6.2 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_75 -2.0 -2.7 Colicin V production protein compare
Pf6N2E2_3876 -2.0 -4.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_841 -2.0 -2.3 hypothetical protein compare
Pf6N2E2_1834 -2.0 -1.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1860 -2.0 -2.4 Ferredoxin, 2Fe-2S compare
Pf6N2E2_5111 -2.0 -3.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2438 -2.0 -1.9 hypothetical protein compare
Pf6N2E2_3612 -2.0 -3.2 HflK protein compare
Pf6N2E2_3658 -2.0 -6.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1032 -2.0 -1.1 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5255 -2.0 -7.6 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5841 -2.0 -1.4 GlcG protein compare
Pf6N2E2_4273 -2.0 -6.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3252 -1.9 -6.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3198 -1.9 -2.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_613 -1.9 -1.5 lipoprotein, putative compare
Pf6N2E2_3634 -1.9 -1.9 Transporter compare
Pf6N2E2_4305 -1.9 -1.5 FIG00959590: hypothetical protein compare
Pf6N2E2_4773 -1.9 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5252 -1.9 -1.5 FIG00956396: hypothetical protein compare
Pf6N2E2_2218 -1.9 -4.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3505 -1.9 -1.0 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5749 -1.9 -3.1 hypothetical protein compare
Pf6N2E2_2073 -1.9 -7.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3839 -1.9 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5825 -1.9 -3.2 FIG00958237: hypothetical protein compare
Pf6N2E2_1972 -1.8 -1.9 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_816 -1.8 -4.5 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_5671 -1.8 -3.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5250 -1.8 -2.7 Restriction endonuclease compare
Pf6N2E2_2586 -1.8 -1.8 Hpt domain protein compare
Pf6N2E2_3537 -1.8 -3.9 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_971 -1.8 -2.1 hypothetical protein compare
Pf6N2E2_2823 -1.8 -3.2 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5720 -1.7 -7.2 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3908 -1.7 -6.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2285 -1.7 -1.8 FIG00954079: hypothetical protein compare
Pf6N2E2_2514 -1.7 -4.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_424 -1.7 -4.7 Decarboxylase family protein compare
Pf6N2E2_5705 -1.7 -1.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5081 -1.7 -2.9 hypothetical protein compare
Pf6N2E2_1548 -1.7 -2.9 Lactoylglutathione lyase compare
Pf6N2E2_3696 -1.7 -1.2 hypothetical protein compare
Pf6N2E2_238 -1.6 -1.7 hypothetical protein compare
Pf6N2E2_5740 -1.6 -5.0 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_1099 -1.6 -1.4 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_4636 -1.6 -5.5 periplasmic binding protein, putative compare
Pf6N2E2_460 -1.5 -1.6 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_4679 -1.5 -5.6 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf6N2E2_5807 -1.5 -4.3 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_4541 -1.5 -1.2 hypothetical protein compare
Pf6N2E2_1110 -1.5 -3.8 FIG00964414: hypothetical protein compare
Pf6N2E2_2967 -1.5 -1.9 Cold shock protein CspA compare
Pf6N2E2_4556 -1.5 -3.3 FIG00953078: hypothetical protein compare
Pf6N2E2_3300 -1.5 -3.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5545 -1.5 -3.0 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2992 -1.5 -4.5 Regulatory protein RecX compare
Pf6N2E2_342 -1.5 -1.3 DNA-binding response regulator compare
Pf6N2E2_2871 -1.5 -1.5 FIG00954271: hypothetical protein compare
Pf6N2E2_3122 -1.5 -1.7 Chemotaxis signal transduction protein compare
Pf6N2E2_5936 -1.5 -1.2 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_2176 -1.5 -2.2 Amidases related to nicotinamidase compare
Pf6N2E2_2513 -1.5 -3.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3454 -1.4 -3.1 hypothetical protein compare
Pf6N2E2_5544 -1.4 -5.0 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5727 -1.4 -5.1 FIG00955360: hypothetical protein compare
Pf6N2E2_421 -1.4 -3.1 Methyl-accepting chemotaxis protein compare
Pf6N2E2_869 -1.4 -3.6 FMN oxidoreductase compare
Pf6N2E2_3830 -1.4 -2.9 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_1534 -1.4 -1.4 Probable transmembrane protein compare
Pf6N2E2_464 -1.4 -1.3 Sensory histidine kinase QseC compare
Pf6N2E2_634 -1.4 -5.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_5771 -1.4 -5.3 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2852 -1.4 -3.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_5898 -1.4 -3.1 Integral membrane protein compare
Pf6N2E2_1081 -1.4 -1.0 probable membrane protein YPO3302 compare
Pf6N2E2_3763 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_5178 -1.3 -1.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5171 -1.3 -9.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2072 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_2872 -1.3 -5.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_58 -1.3 -1.4 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_375 -1.3 -3.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3917 -1.3 -6.0 High-affinity choline uptake protein BetT conserved
Pf6N2E2_4590 -1.3 -4.0 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_1917 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_502 -1.3 -2.7 hypothetical protein compare
Pf6N2E2_1596 -1.3 -1.0 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_2121 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_4362 -1.3 -2.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2942 -1.3 -6.0 ATP-dependent helicase DinG/Rad3 compare
Pf6N2E2_1340 -1.3 -1.4 major pilin protein fimA compare
Pf6N2E2_820 -1.3 -2.9 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf6N2E2_122 -1.3 -1.4 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5172 -1.3 -2.6 FOG: TPR repeat compare
Pf6N2E2_2487 -1.3 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_4888 -1.2 -8.8 Excinuclease ABC subunit A compare
Pf6N2E2_4150 -1.2 -1.9 probable exported protein YPO0432 compare
Pf6N2E2_5647 -1.2 -3.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3504 -1.2 -5.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2755 -1.2 -1.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_52 -1.2 -7.1 Excinuclease ABC subunit B compare
Pf6N2E2_1148 -1.2 -2.7 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_4120 -1.2 -6.9 Trk system potassium uptake protein TrkA compare
Pf6N2E2_5506 -1.2 -5.3 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf6N2E2_5768 -1.2 -2.4 DNA recombination-dependent growth factor C compare
Pf6N2E2_1128 -1.2 -1.3 Two-component response regulator compare
Pf6N2E2_5508 -1.2 -1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_189 -1.2 -1.5 regulatory protein, putative compare


Specific Phenotypes

For 14 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chloride across organisms