Experiment set7IT020 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chloride 500 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.8 -4.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4071 -5.7 -5.6 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3351 -4.0 -6.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2756 -3.9 -8.6 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4162 -3.6 -4.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4418 -3.3 -2.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4803 -3.3 -2.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4352 -3.1 -5.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4369 -2.9 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4585 -2.9 -15.3 Cell division protein FtsX compare
Pf6N2E2_144 -2.8 -15.6 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3062 -2.6 -5.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_145 -2.6 -11.2 putative exported protein compare
Pf6N2E2_3885 -2.4 -5.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4454 -2.4 -7.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5705 -2.4 -3.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3617 -2.4 -5.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3198 -2.4 -3.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3834 -2.4 -6.6 Lipoprotein NlpD compare
Pf6N2E2_5430 -2.3 -11.0 Transglycosylase, Slt family compare
Pf6N2E2_5001 -2.3 -2.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4584 -2.3 -3.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5956 -2.1 -6.3 FIG004453: protein YceG like compare
Pf6N2E2_2507 -2.1 -5.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_156 -2.0 -3.2 Carbon storage regulator compare
Pf6N2E2_4416 -2.0 -4.1 Tyrosine recombinase XerC compare
Pf6N2E2_4638 -2.0 -4.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3611 -2.0 -1.7 HflC protein compare
Pf6N2E2_5406 -2.0 -4.0 FIG00958224: hypothetical protein compare
Pf6N2E2_2013 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_4187 -1.9 -4.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5703 -1.9 -6.2 outer membrane protein H1 compare
Pf6N2E2_4353 -1.7 -3.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2074 -1.6 -1.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3332 -1.6 -5.5 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_4612 -1.6 -4.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2506 -1.6 -10.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3330 -1.6 -6.7 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_2022 -1.6 -5.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3179 -1.6 -3.9 FIG021952: putative membrane protein compare
Pf6N2E2_2217 -1.6 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5049 -1.5 -3.1 acetyltransferase, GNAT family compare
Pf6N2E2_2508 -1.5 -3.6 hypothetical protein compare
Pf6N2E2_4273 -1.5 -6.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3908 -1.5 -6.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1676 -1.5 -2.2 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_4372 -1.5 -5.7 FIG00460773: hypothetical protein compare
Pf6N2E2_1806 -1.5 -2.2 hypothetical protein compare
Pf6N2E2_1293 -1.5 -2.2 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_2938 -1.5 -4.1 Outer membrane lipoprotein compare
Pf6N2E2_5242 -1.4 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1211 -1.4 -2.1 Lactoylglutathione lyase compare
Pf6N2E2_3333 -1.4 -6.6 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf6N2E2_302 -1.4 -4.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5704 -1.4 -5.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_659 -1.4 -2.5 Transcriptional regulatory protein ompR compare
Pf6N2E2_288 -1.4 -2.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3461 -1.4 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_6001 -1.3 -6.1 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_813 -1.3 -3.3 Response regulator compare
Pf6N2E2_4918 -1.3 -2.5 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3607 -1.3 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3658 -1.3 -5.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2278 -1.3 -9.3 Transcription-repair coupling factor compare
Pf6N2E2_1932 -1.3 -4.7 Transcriptional regulator, IclR family compare
Pf6N2E2_2258 -1.3 -6.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3331 -1.3 -8.2 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation conserved
Pf6N2E2_5766 -1.3 -1.7 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3841 -1.3 -4.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5150 -1.2 -5.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2069 -1.2 -1.3 FIG00953703: hypothetical protein compare
Pf6N2E2_4152 -1.2 -5.5 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_2992 -1.2 -3.8 Regulatory protein RecX compare
Pf6N2E2_2073 -1.2 -5.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1545 -1.2 -4.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2128 -1.2 -4.1 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_5252 -1.1 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_28 -1.1 -1.8 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_1860 -1.1 -2.6 Ferredoxin, 2Fe-2S compare
Pf6N2E2_42 -1.1 -2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4508 -1.1 -3.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2285 -1.1 -2.0 FIG00954079: hypothetical protein compare
Pf6N2E2_2218 -1.1 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2706 -1.1 -3.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3534 -1.1 -1.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_1095 -1.1 -1.8 Opine oxidase subunit C compare
Pf6N2E2_3833 -1.1 -3.7 hypothetical protein compare
Pf6N2E2_579 -1.1 -1.5 FIG00962753: hypothetical protein compare
Pf6N2E2_2509 -1.1 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5342 -1.1 -2.6 21 kDa hemolysin precursor compare
Pf6N2E2_3282 -1.1 -2.1 FIG005080: Possible exported protein compare
Pf6N2E2_3696 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_2176 -1.0 -1.2 Amidases related to nicotinamidase compare
Pf6N2E2_1435 -1.0 -2.3 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1694 -1.0 -1.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5499 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_2219 -1.0 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5086 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_815 -1.0 -5.0 Signal transduction histidine kinase compare
Pf6N2E2_5965 -1.0 -2.6 transcriptional regulator compare
Pf6N2E2_4205 -1.0 -2.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2367 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_4599 -1.0 -2.4 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_1032 -1.0 -1.0 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_4399 -1.0 -4.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_5536 -1.0 -1.5 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2870 -1.0 -2.8 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2864 -1.0 -2.1 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_2636 -1.0 -2.1 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3783 -1.0 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5027 -1.0 -6.7 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_1195 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1660 -1.0 -2.6 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_5646 -1.0 -1.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3612 -1.0 -2.5 HflK protein compare
Pf6N2E2_4636 -1.0 -5.3 periplasmic binding protein, putative compare
Pf6N2E2_1024 -0.9 -2.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_16 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_3661 -0.9 -3.7 hypothetical protein compare
Pf6N2E2_1370 -0.9 -4.1 Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28) compare
Pf6N2E2_4679 -0.9 -5.2 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf6N2E2_4381 -0.9 -3.5 hypothetical protein compare
Pf6N2E2_3829 -0.9 -2.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_5255 -0.9 -5.6 Outer membrane stress sensor protease DegS compare
Pf6N2E2_1514 -0.9 -2.4 lipoprotein OprI, putative compare
Pf6N2E2_1036 -0.9 -3.2 Biopolymer transport protein ExbD/TolR compare
Pf6N2E2_2325 -0.9 -3.3 Recombination protein RecR compare
Pf6N2E2_1603 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_5392 -0.9 -1.9 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_2791 -0.9 -1.4 FIG00954883: hypothetical protein compare
Pf6N2E2_5527 -0.9 -1.2 Cold shock protein CspC compare
Pf6N2E2_4150 -0.9 -3.7 probable exported protein YPO0432 compare
Pf6N2E2_6075 -0.9 -2.3 Chromosome segregation ATPases compare
Pf6N2E2_623 -0.9 -0.9 FIG00954674: hypothetical protein compare
Pf6N2E2_447 -0.9 -3.5 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_3603 -0.9 -4.0 FIG003573: hypothetical protein compare
Pf6N2E2_3504 -0.9 -5.4 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_613 -0.9 -1.2 lipoprotein, putative compare
Pf6N2E2_5761 -0.9 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5520 -0.8 -3.0 Sensory box histidine kinase compare
Pf6N2E2_2852 -0.8 -4.4 GGDEF domain/EAL domain protein compare
Pf6N2E2_737 -0.8 -0.7 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_1450 -0.8 -0.8 FIG00960438: hypothetical protein compare
Pf6N2E2_3255 -0.8 -2.6 YrbA protein compare
Pf6N2E2_1534 -0.8 -1.5 Probable transmembrane protein compare
Pf6N2E2_52 -0.8 -5.9 Excinuclease ABC subunit B compare
Pf6N2E2_2510 -0.8 -2.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5740 -0.8 -3.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_818 -0.8 -3.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5739 -0.8 -1.1 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2645 -0.8 -4.5 ATP-dependent DNA helicase RecQ compare
Pf6N2E2_698 -0.8 -1.6 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_819 -0.8 -1.2 Response regulator compare
Pf6N2E2_3839 -0.8 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2080 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_1606 -0.8 -3.4 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_544 -0.8 -1.6 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_316 -0.8 -2.7 membrane protein, putative compare
Pf6N2E2_3252 -0.8 -4.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2010 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_1302 -0.8 -2.6 TRAP-type C4-dicarboxylate transport system, large permease component compare
Pf6N2E2_5758 -0.8 -1.5 FIG00957314: hypothetical protein compare
Pf6N2E2_3763 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_2371 -0.8 -2.0 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_405 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_4391 -0.7 -3.0 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_6081 -0.7 -1.9 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_3300 -0.7 -2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2930 -0.7 -2.2 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf6N2E2_1647 -0.7 -2.8 Maltose/maltodextrin ABC transporter, permease protein MalF compare
Pf6N2E2_3901 -0.7 -2.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_3454 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_5278 -0.7 -4.5 Signal transduction histidine kinase compare
Pf6N2E2_2071 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_2264 -0.7 -2.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1460 -0.7 -2.8 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_5250 -0.7 -1.7 Restriction endonuclease compare
Pf6N2E2_3027 -0.7 -1.1 Baseplate assembly protein V compare
Pf6N2E2_2872 -0.7 -4.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_4797 -0.7 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2479 -0.7 -2.3 Transcription elongation factor GreB compare
Pf6N2E2_3161 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_1027 -0.7 -2.2 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_178 -0.7 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5757 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_3533 -0.7 -2.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_88 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_3279 -0.7 -2.5 FIG138315: Putative alpha helix protein compare
Pf6N2E2_1720 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_2887 -0.7 -2.1 Aldose 1-epimerase compare
Pf6N2E2_5245 -0.7 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_624 -0.7 -3.0 hypothetical protein PA3071 compare
Pf6N2E2_3517 -0.7 -2.8 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_4888 -0.7 -5.8 Excinuclease ABC subunit A compare
Pf6N2E2_2501 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_5671 -0.7 -1.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_833 -0.7 -1.8 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_5714 -0.7 -1.6 Flavoprotein WrbA compare
Pf6N2E2_5171 -0.7 -5.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3293 -0.7 -1.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare


Specific Phenotypes

For 5 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chloride across organisms