Experiment set7IT020 for Pantoea sp. MT58

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Group: survival
Media: + Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Culturing: MT058_ML2, tube, Aerobic, at 30 (C)
By: Mike Thorgersen on 07/11/2022

Specific Phenotypes

For 32 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms

SEED Subsystems

Subsystem	#Specific
Bacterial Cell Division	1
Homogentisate pathway of aromatic compound degradation	1
Queuosine-Archaeosine Biosynthesis	1
Restriction-Modification System	1
TCA Cycle	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycine, serine and threonine metabolism
• Methionine metabolism
• Lysine biosynthesis
• Lysine degradation
• Arginine and proline metabolism
• Aminophosphonate metabolism
• Nucleotide sugars metabolism
• Pyruvate metabolism
• Caprolactam degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
ectoine degradation	4	1	1
ectoine biosynthesis	5	3	1
norspermidine biosynthesis	6	4	1
rhizobactin 1021 biosynthesis	7	2	1
partial TCA cycle (obligate autotrophs)	8	7	1
superpathway of polyamine biosynthesis III	8	4	1
TCA cycle VII (acetate-producers)	9	6	1
TCA cycle VI (Helicobacter)	9	6	1
TCA cycle I (prokaryotic)	10	9	1
baumannoferrin biosynthesis	11	2	1
pyoverdine I biosynthesis	11	2	1
superpathway of glyoxylate bypass and TCA	12	11	1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	26	25	1