Experiment set7IT019 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Pepper

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.7 -2.5 anthranilate synthase, component II compare
Psyr_1983 -5.5 -3.8 3-isopropylmalate dehydratase, large subunit compare
Psyr_4897 -4.9 -4.5 imidazoleglycerol-phosphate dehydratase compare
Psyr_4893 -4.5 -1.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1613 -4.4 -5.3 septum site-determining protein MinC compare
Psyr_1984 -4.4 -3.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_0847 -4.1 -8.7 acetolactate synthase, small subunit compare
Psyr_1985 -4.1 -9.8 3-isopropylmalate dehydrogenase compare
Psyr_0846 -4.0 -11.6 acetolactate synthase, large subunit compare
Psyr_1350 -4.0 -4.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0034 -4.0 -4.7 tryptophan synthase, beta chain compare
Psyr_4134 -3.9 -11.2 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0033 -3.9 -5.9 tryptophan synthase, alpha chain compare
Psyr_4133 -3.9 -14.2 histidinol dehydrogenase compare
Psyr_4609 -3.9 -15.9 anthranilate synthase, component I compare
Psyr_0474 -3.8 -11.2 homoserine O-acetyltransferase compare
Psyr_0529 -3.8 -5.7 Glycosyl transferase, group 1 compare
Psyr_4894 -3.7 -8.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0918 -3.6 -14.4 ABC transporter compare
Psyr_4991 -3.6 -2.5 hypothetical protein compare
Psyr_1269 -3.6 -4.9 phosphoribosylformylglycinamidine synthase compare
Psyr_4270 -3.5 -7.6 serine hydroxymethyltransferase compare
Psyr_4362 -3.4 -3.3 Rare lipoprotein A compare
Psyr_0469 -3.4 -11.1 dihydroxyacid dehydratase compare
Psyr_0473 -3.3 -8.1 Methionine biosynthesis MetW compare
Psyr_3554 -3.3 -1.2 Carbon storage regulator compare
Psyr_0917 -3.2 -11.4 ABC-2 compare
Psyr_1212 -3.2 -2.4 type III secretion protein HrpO compare
Psyr_4369 -3.1 -7.4 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4580 -3.1 -3.8 anthranilate phosphoribosyltransferase compare
Psyr_1668 -3.1 -6.5 amidophosphoribosyltransferase compare
Psyr_4407 -3.0 -3.6 phosphoribosylamine--glycine ligase compare
Psyr_1669 -3.0 -8.8 O-succinylhomoserine sulfhydrylase compare
Psyr_3835 -3.0 -2.0 hypothetical protein compare
Psyr_4896 -3.0 -8.3 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0167 -2.9 -3.1 hypothetical protein compare
Psyr_2980 -2.9 -4.6 UDP-glucose pyrophosphorylase compare
Psyr_1379 -2.9 -2.7 Regulatory protein RecX compare
Psyr_1725 -2.8 -3.2 Protein of unknown function DUF204 compare
Psyr_4132 -2.7 -7.9 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0838 -2.6 -2.6 Rieske [2Fe-2S] region compare
Psyr_1663 -2.6 -4.0 phosphoribosylanthranilate isomerase compare
Psyr_3958 -2.6 -9.2 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_3739 -2.5 -2.9 conserved hypothetical protein compare
Psyr_3028 -2.5 -2.7 Protein of unknown function DUF28 compare
Psyr_0576 -2.5 -3.1 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_3208 -2.5 -2.7 NADH dehydrogenase subunit M compare
Psyr_4019 -2.5 -4.5 H-NS family protein MvaT compare
Psyr_0848 -2.4 -8.9 ketol-acid reductoisomerase compare
Psyr_4920 -2.4 -1.5 conserved hypothetical bacteriophage protein compare
Psyr_3287 -2.4 -2.8 DNA topoisomerase I compare
Psyr_1211 -2.4 -6.1 type III secretion protein HrpP compare
Psyr_1217 -2.3 -3.1 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_1257 -2.3 -7.2 2-isopropylmalate synthase compare
Psyr_0219 -2.3 -8.1 phosphomannomutase compare
Psyr_3008 -2.3 -4.7 Undecaprenyl-diphosphatase compare
Psyr_0385 -2.3 -3.0 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1247 -2.3 -2.5 conserved hypothetical protein compare
Psyr_1198 -2.2 -2.4 type III secretion protein HrpF compare
Psyr_4262 -2.2 -1.3 lipoprotein, putative compare
Psyr_4130 -2.2 -8.1 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_0386 -2.2 -3.6 phosphoribosyl-AMP cyclohydrolase compare
Psyr_2227 -2.2 -1.9 conserved hypothetical protein compare
Psyr_0532 -2.2 -5.6 conserved hypothetical protein compare
Psyr_3947 -2.1 -1.5 Methyltransferase, putative compare
Psyr_1373 -2.1 -3.1 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3090 -2.1 -2.8 hypothetical protein compare
Psyr_1218 -2.0 -7.5 type III helper protein HrpK1 compare
Psyr_0531 -2.0 -1.9 LmbE-like protein compare
Psyr_1270 -2.0 -1.3 conserved hypothetical protein compare
Psyr_2613 -2.0 -5.9 Cyclic peptide transporter compare
Psyr_4673 -1.9 -1.7 Coenzyme PQQ synthesis D compare
Psyr_5132 -1.9 -3.2 Glucose-inhibited division protein A subfamily compare
Psyr_4566 -1.9 -8.4 Peptidase M23B compare
Psyr_1678 -1.9 -0.9 Hypothetical protein compare
Psyr_2456 -1.8 -2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_1191 -1.8 -7.1 type III transcriptional regulator HrpS compare
Psyr_2245 -1.8 -2.1 conserved domain protein compare
Psyr_4852 -1.8 -5.2 D-3-phosphoglycerate dehydrogenase compare
Psyr_0356 -1.8 -1.6 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_1215 -1.8 -7.5 Type III secretion protein HrcV compare
Psyr_2758 -1.8 -3.0 ABC transporter:TOBE compare
Psyr_0557 -1.8 -4.7 phosphoserine phosphatase compare
Psyr_4801 -1.8 -4.1 Outer membrane efflux protein compare
Psyr_4408 -1.7 -7.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_1208 -1.7 -8.7 type III secretion protein HrcR compare
Psyr_2244 -1.7 -1.6 DNA topoisomerase III compare
Psyr_1111 -1.7 -1.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1196 -1.7 -2.0 type III secretion protein HrpD compare
Psyr_1748 -1.7 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1883 -1.7 -2.1 Hypothetical protein compare
Psyr_4844 -1.7 -4.8 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_2540 -1.6 -1.9 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4686 -1.6 -5.0 8-amino-7-oxononanoate synthase compare
Psyr_1791 -1.6 -2.9 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_1210 -1.6 -2.7 type III secretion protein HrcQa compare
Psyr_3585 -1.6 -2.3 Sua5/YciO/YrdC/YwlC compare
Psyr_1205 -1.6 -5.6 type III secretion protein HrcU compare
Psyr_1274 -1.6 -2.6 transferase hexapeptide repeat protein compare
Psyr_4361 -1.6 -3.1 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_2134 -1.6 -1.8 protein of unknown function DUF903 compare
Psyr_2537 -1.6 -3.0 conserved hypothetical protein compare
Psyr_1747 -1.5 -3.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0377 -1.5 -6.3 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_2031 -1.5 -1.9 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_5072 -1.5 -1.0 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3785 -1.5 -3.5 DSBA oxidoreductase compare
Psyr_3867 -1.5 -1.4 hypothetical protein compare
Psyr_3435 -1.5 -3.1 chemotaxis phosphatase, CheZ compare
Psyr_3677 -1.5 -2.1 Aminotransferase, class I and II compare
Psyr_0552 -1.5 -3.8 conserved hypothetical protein compare
Psyr_4144 -1.5 -1.0 Protein of unknown function DUF1239 compare
Psyr_0528 -1.5 -2.4 Carbamoyltransferase compare
Psyr_0373 -1.5 -1.3 CDS compare
Psyr_4091 -1.5 -3.4 8-oxo-dGTPase compare
Psyr_1544 -1.5 -3.0 SirA-like protein compare
Psyr_1402 -1.5 -2.2 SlyX compare
Psyr_1200 -1.5 -6.4 outer-membrane type III secretion protein HrcC compare
Psyr_0070 -1.5 -1.7 hypothetical protein compare
Psyr_1190 -1.5 -2.1 type III transcriptional regulator HrpR compare
Psyr_1487 -1.5 -2.2 conserved hypothetical protein compare
Psyr_1216 -1.5 -5.4 type III secretion outer membrane protein PopN compare
Psyr_0919 -1.5 -7.4 Chromosome segregation ATPase-like protein compare
Psyr_0914 -1.4 -6.4 Glycosyl transferase, group 1 compare
Psyr_2543 -1.4 -1.7 conserved hypothetical protein compare
Psyr_3545 -1.4 -2.4 Short-chain dehydrogenase/reductase SDR compare
Psyr_2879 -1.4 -1.4 VirK compare
Psyr_2897 -1.4 -4.3 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0376 -1.4 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_2955 -1.4 -2.2 Surfeit locus 4-related protein compare
Psyr_3886 -1.3 -1.4 methionyl-tRNA synthetase compare
Psyr_4582 -1.3 -0.8 hypothetical protein compare
Psyr_3425 -1.3 -2.5 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_0281 -1.3 -2.5 ABC transporter compare
Psyr_0827 -1.3 -1.9 pantothenate synthetase compare
Psyr_5096 -1.3 -1.9 hypothetical protein compare
Psyr_3782 -1.3 -2.6 CsbD-like protein compare
Psyr_2925 -1.3 -2.1 Helix-turn-helix motif protein compare
Psyr_1138 -1.3 -1.7 GCN5-related N-acetyltransferase compare
Psyr_1806 -1.3 -1.9 Ureidoglycolate hydrolase compare
Psyr_2223 -1.3 -0.9 sarcosine oxidase, delta subunit compare
Psyr_3266 -1.3 -2.0 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal compare
Psyr_0014 -1.3 -2.4 lipid A biosynthesis acyltransferase compare
Psyr_4512 -1.3 -3.2 putative phage-related protein compare
Psyr_0920 -1.3 -8.4 Glycosyl transferase, group 1 compare
Psyr_2080 -1.3 -4.0 aminodeoxychorismate synthase, subunit I compare
Psyr_1850 -1.3 -2.3 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase compare
Psyr_0320 -1.3 -4.1 Protein of unknown function UPF0149 compare
Psyr_2297 -1.3 -2.1 glucose 1-dehydrogenase compare
Psyr_0475 -1.3 -2.2 Protein of unknown function YGGT compare
Psyr_0555 -1.3 -3.3 Protein of unknown function DUF330 compare
Psyr_1213 -1.3 -4.0 type III secretion cytoplasmic ATPase HrcN compare
Psyr_1614 -1.3 -1.8 lipid A biosynthesis acyltransferase compare
Psyr_1666 -1.2 -2.7 Sporulation related protein compare
Psyr_0769 -1.2 -2.0 conserved hypothetical membrane-anchored protein compare
Psyr_0826 -1.2 -4.4 glucose-6-phosphate isomerase compare
Psyr_3636 -1.2 -6.8 Polysaccharide biosynthesis protein CapD compare
Psyr_4454 -1.2 -1.6 HupE/UreJ protein compare
Psyr_0781 -1.2 -2.2 Protein-glutamate methylesterase compare
Psyr_1937 -1.2 -2.3 UspA compare
Psyr_3691 -1.2 -3.6 conserved hypothetical protein compare
Psyr_1056 -1.2 -2.1 Poly(beta-D-mannuronate) lyase compare
Psyr_1914 -1.2 -5.9 transaldolase compare
Psyr_3179 -1.2 -2.2 DNA translocase FtsK compare
Psyr_2348 -1.2 -2.1 hypothetical protein compare
Psyr_4833 -1.2 -2.1 histidine ammonia-lyase compare
Psyr_3459 -1.2 -1.8 Helix-turn-helix, Fis-type compare
Psyr_3007 -1.2 -1.6 Protein of unknown function DUF1294 compare
Psyr_3779 -1.2 -1.8 GCN5-related N-acetyltransferase compare
Psyr_0546 -1.2 -3.2 lipoprotein, putative compare
Psyr_1069 -1.1 -2.5 molybdopterin synthase subunit MoaE compare
Psyr_4842 -1.1 -3.4 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_2462 -1.1 -2.9 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_3934 -1.1 -1.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_3558 -1.1 -1.8 6,7-dimethyl-8-ribityllumazine synthase compare
Psyr_0132 -1.1 -2.4 conserved hypothetical protein compare
Psyr_1975 -1.1 -2.1 Integrase, catalytic region compare
Psyr_1953 -1.1 -1.1 conserved hypothetical protein compare
Psyr_1824 -1.1 -3.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_2310 -1.1 -3.0 lipoprotein, putative compare
Psyr_1714 -1.1 -2.6 exonuclease SbcC compare
Psyr_2787 -1.1 -1.6 hypothetical protein compare
Psyr_0426 -1.1 -1.0 lipoprotein, putative compare
Psyr_4140 -1.1 -1.4 Protein of unknown function DUF140 compare
Psyr_3144 -1.1 -2.1 Fimbrial assembly compare
Psyr_0446 -1.1 -1.8 Malonate decarboxylase gamma subunit compare
Psyr_4610 -1.1 -2.6 phosphoglycolate phosphatase compare
Psyr_3193 -1.1 -2.5 Transcription factor jumonji, jmjC compare
Psyr_4343 -1.1 -4.0 Sel1-like repeat protein compare
Psyr_4416 -1.1 -1.8 precorrin-8X methylmutase compare
Psyr_4015 -1.1 -1.1 conserved domain protein compare
Psyr_4350 -1.1 -1.6 Protein of unknown function DUF218 compare
Psyr_2264 -1.1 -0.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2617 -1.1 -1.3 Secretion protein HlyD compare
Psyr_2461 -1.1 -1.9 Uncharacterized conserved protein UCP030820 compare
Psyr_2838 -1.1 -1.3 conserved hypothetical protein compare
Psyr_3433 -1.1 -2.5 Protein-glutamate methylesterase compare
Psyr_1955 -1.1 -1.5 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_1206 -1.0 -2.6 type III secretion protein HrcT compare
Psyr_0655 -1.0 -3.5 conserved domain protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments