Experiment set7IT018 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Pepper

200 most important genes:

  gene name fitness t score description  
Psyr_0847 -4.8 -7.2 acetolactate synthase, small subunit compare
Psyr_1613 -4.7 -4.6 septum site-determining protein MinC compare
Psyr_4581 -4.6 -2.7 anthranilate synthase, component II compare
Psyr_4580 -4.6 -4.4 anthranilate phosphoribosyltransferase compare
Psyr_1985 -4.6 -7.6 3-isopropylmalate dehydrogenase compare
Psyr_4134 -4.5 -9.9 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_1983 -4.4 -6.6 3-isopropylmalate dehydratase, large subunit compare
Psyr_1984 -4.3 -3.2 3-isopropylmalate dehydratase, small subunit compare
Psyr_4897 -4.3 -4.3 imidazoleglycerol-phosphate dehydratase compare
Psyr_4407 -4.2 -2.9 phosphoribosylamine--glycine ligase compare
Psyr_0033 -4.2 -5.0 tryptophan synthase, alpha chain compare
Psyr_0034 -4.2 -2.9 tryptophan synthase, beta chain compare
Psyr_4894 -4.0 -7.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4270 -3.9 -10.0 serine hydroxymethyltransferase compare
Psyr_0474 -3.9 -10.6 homoserine O-acetyltransferase compare
Psyr_0846 -3.9 -11.4 acetolactate synthase, large subunit compare
Psyr_4893 -3.9 -2.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4609 -3.9 -14.9 anthranilate synthase, component I compare
Psyr_1212 -3.8 -2.1 type III secretion protein HrpO compare
Psyr_4133 -3.8 -14.5 histidinol dehydrogenase compare
Psyr_1269 -3.7 -3.6 phosphoribosylformylglycinamidine synthase compare
Psyr_0386 -3.7 -5.9 phosphoribosyl-AMP cyclohydrolase compare
Psyr_1190 -3.5 -4.5 type III transcriptional regulator HrpR compare
Psyr_0529 -3.5 -6.2 Glycosyl transferase, group 1 compare
Psyr_0918 -3.4 -14.7 ABC transporter compare
Psyr_4144 -3.4 -1.2 Protein of unknown function DUF1239 compare
Psyr_3835 -3.3 -2.6 hypothetical protein compare
Psyr_4369 -3.3 -6.2 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4362 -3.3 -3.2 Rare lipoprotein A compare
Psyr_0531 -3.2 -2.7 LmbE-like protein compare
Psyr_4896 -3.2 -7.3 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_3554 -3.2 -1.1 Carbon storage regulator compare
Psyr_2543 -3.2 -2.3 conserved hypothetical protein compare
Psyr_0469 -3.1 -11.2 dihydroxyacid dehydratase compare
Psyr_0917 -3.1 -11.5 ABC-2 compare
Psyr_3208 -3.0 -3.2 NADH dehydrogenase subunit M compare
Psyr_1668 -2.9 -6.1 amidophosphoribosyltransferase compare
Psyr_0473 -2.9 -6.4 Methionine biosynthesis MetW compare
Psyr_1669 -2.9 -8.1 O-succinylhomoserine sulfhydrylase compare
Psyr_3958 -2.9 -9.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_0576 -2.7 -2.6 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1663 -2.7 -4.3 phosphoribosylanthranilate isomerase compare
Psyr_0070 -2.7 -2.5 hypothetical protein compare
Psyr_1379 -2.6 -3.1 Regulatory protein RecX compare
Psyr_2245 -2.6 -2.6 conserved domain protein compare
Psyr_4132 -2.6 -9.4 histidinol phosphate aminotransferase apoenzyme compare
Psyr_4920 -2.6 -1.9 conserved hypothetical bacteriophage protein compare
Psyr_1257 -2.6 -8.3 2-isopropylmalate synthase compare
Psyr_1350 -2.6 -4.5 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4130 -2.5 -8.8 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1373 -2.4 -2.3 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3459 -2.4 -2.8 Helix-turn-helix, Fis-type compare
Psyr_1111 -2.4 -1.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4991 -2.3 -2.5 hypothetical protein compare
Psyr_0385 -2.3 -3.4 phosphoribosyl-ATP pyrophosphatase compare
Psyr_4140 -2.3 -2.3 Protein of unknown function DUF140 compare
Psyr_2456 -2.3 -2.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_2758 -2.2 -4.0 ABC transporter:TOBE compare
Psyr_1678 -2.2 -0.9 Hypothetical protein compare
Psyr_0219 -2.2 -7.9 phosphomannomutase compare
Psyr_0014 -2.2 -4.0 lipid A biosynthesis acyltransferase compare
Psyr_4686 -2.2 -6.5 8-amino-7-oxononanoate synthase compare
Psyr_3435 -2.2 -3.1 chemotaxis phosphatase, CheZ compare
Psyr_3287 -2.2 -2.9 DNA topoisomerase I compare
Psyr_0446 -2.1 -2.4 Malonate decarboxylase gamma subunit compare
Psyr_0532 -2.1 -5.9 conserved hypothetical protein compare
Psyr_0167 -2.1 -2.2 hypothetical protein compare
Psyr_2925 -2.1 -2.8 Helix-turn-helix motif protein compare
Psyr_0848 -2.1 -7.5 ketol-acid reductoisomerase compare
Psyr_1725 -2.1 -3.5 Protein of unknown function DUF204 compare
Psyr_3193 -2.1 -3.1 Transcription factor jumonji, jmjC compare
Psyr_1811 -2.0 -2.3 transcriptional regulator, GntR family compare
Psyr_3008 -2.0 -4.2 Undecaprenyl-diphosphatase compare
Psyr_3028 -2.0 -1.5 Protein of unknown function DUF28 compare
Psyr_1208 -1.9 -8.8 type III secretion protein HrcR compare
Psyr_5096 -1.9 -2.3 hypothetical protein compare
Psyr_1218 -1.9 -7.5 type III helper protein HrpK1 compare
Psyr_0528 -1.9 -2.8 Carbamoyltransferase compare
Psyr_4566 -1.9 -8.3 Peptidase M23B compare
Psyr_4408 -1.9 -7.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_1205 -1.9 -6.3 type III secretion protein HrcU compare
Psyr_0376 -1.8 -2.3 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_1211 -1.8 -4.1 type III secretion protein HrpP compare
Psyr_0555 -1.8 -4.4 Protein of unknown function DUF330 compare
Psyr_5132 -1.8 -2.7 Glucose-inhibited division protein A subfamily compare
Psyr_0426 -1.8 -1.3 lipoprotein, putative compare
Psyr_0557 -1.8 -4.0 phosphoserine phosphatase compare
Psyr_4833 -1.8 -3.7 histidine ammonia-lyase compare
Psyr_4852 -1.8 -4.5 D-3-phosphoglycerate dehydrogenase compare
Psyr_4844 -1.7 -4.9 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_3545 -1.7 -2.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_2613 -1.7 -4.8 Cyclic peptide transporter compare
Psyr_1210 -1.7 -3.7 type III secretion protein HrcQa compare
Psyr_2980 -1.7 -2.8 UDP-glucose pyrophosphorylase compare
Psyr_4842 -1.6 -3.8 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_4416 -1.6 -2.7 precorrin-8X methylmutase compare
Psyr_2080 -1.6 -5.1 aminodeoxychorismate synthase, subunit I compare
Psyr_1217 -1.6 -2.1 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_0827 -1.6 -2.7 pantothenate synthetase compare
Psyr_1200 -1.6 -7.6 outer-membrane type III secretion protein HrcC compare
Psyr_1215 -1.6 -6.3 Type III secretion protein HrcV compare
Psyr_1270 -1.6 -1.2 conserved hypothetical protein compare
Psyr_2973 -1.6 -1.6 Glyoxalase I compare
Psyr_1191 -1.6 -5.6 type III transcriptional regulator HrpS compare
Psyr_1459 -1.6 -3.1 DNA polymerase, beta-like region compare
Psyr_1748 -1.6 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_2617 -1.5 -2.0 Secretion protein HlyD compare
Psyr_1751 -1.5 -4.2 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_2833 -1.5 -2.3 CDS compare
Psyr_0550 -1.5 -2.0 Protein of unknown function UPF0227 compare
Psyr_3627 -1.5 -2.2 OsmC-like protein compare
Psyr_0793 -1.5 -3.1 conserved hypothetical protein compare
Psyr_0281 -1.5 -2.7 ABC transporter compare
Psyr_3433 -1.5 -2.8 Protein-glutamate methylesterase compare
Psyr_2808 -1.4 -1.5 hypothetical protein compare
Psyr_1197 -1.4 -2.3 type III secretion protein HrpE compare
Psyr_0377 -1.4 -5.3 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_3947 -1.4 -1.2 Methyltransferase, putative compare
Psyr_2573 -1.4 -2.6 transcriptional regulator, DeoR family compare
Psyr_4388 -1.4 -1.2 Response regulator receiver compare
Psyr_0259 -1.4 -2.5 Osmolarity sensor protein envZ compare
Psyr_2887 -1.4 -1.3 Endoribonuclease L-PSP compare
Psyr_4673 -1.4 -1.7 Coenzyme PQQ synthesis D compare
Psyr_3681 -1.4 -2.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_2461 -1.4 -2.9 Uncharacterized conserved protein UCP030820 compare
Psyr_0920 -1.4 -9.0 Glycosyl transferase, group 1 compare
Psyr_2031 -1.4 -2.0 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3135 -1.4 -1.6 transcriptional regulator, GntR family compare
Psyr_1213 -1.4 -4.0 type III secretion cytoplasmic ATPase HrcN compare
Psyr_1216 -1.4 -5.3 type III secretion outer membrane protein PopN compare
Psyr_2223 -1.3 -1.5 sarcosine oxidase, delta subunit compare
Psyr_0248 -1.3 -2.7 conserved hypothetical protein compare
Psyr_4257 -1.3 -2.7 Uncharacterized protein UPF0114 compare
Psyr_4605 -1.3 -2.9 transcriptional regulator PrtN, putative compare
Psyr_0914 -1.3 -6.0 Glycosyl transferase, group 1 compare
Psyr_0356 -1.3 -1.1 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_3867 -1.3 -1.3 hypothetical protein compare
Psyr_2977 -1.3 -3.1 cointegrate resolution protein T compare
Psyr_1544 -1.3 -2.0 SirA-like protein compare
Psyr_1056 -1.3 -2.4 Poly(beta-D-mannuronate) lyase compare
Psyr_1953 -1.3 -1.1 conserved hypothetical protein compare
Psyr_0818 -1.3 -2.2 ampE protein compare
Psyr_4804 -1.3 -2.1 conserved hypothetical protein compare
Psyr_4262 -1.3 -0.9 lipoprotein, putative compare
Psyr_4361 -1.3 -2.3 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_0951 -1.2 -2.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_2264 -1.2 -1.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_1955 -1.2 -2.2 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_2347 -1.2 -1.8 hypothetical protein compare
Psyr_0781 -1.2 -1.8 Protein-glutamate methylesterase compare
Psyr_4380 -1.2 -1.8 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_1791 -1.2 -2.2 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_0383 -1.2 -1.4 Twin-arginine translocation protein TatB compare
Psyr_3785 -1.2 -1.9 DSBA oxidoreductase compare
Psyr_4610 -1.2 -2.6 phosphoglycolate phosphatase compare
Psyr_1247 -1.2 -1.6 conserved hypothetical protein compare
Psyr_0826 -1.2 -4.4 glucose-6-phosphate isomerase compare
Psyr_0919 -1.2 -6.3 Chromosome segregation ATPase-like protein compare
Psyr_4151 -1.2 -0.7 Phosphocarrier HPr protein compare
Psyr_3280 -1.2 -1.2 methylthioadenosine phosphorylase compare
Psyr_2227 -1.2 -1.5 conserved hypothetical protein compare
Psyr_4091 -1.2 -3.0 8-oxo-dGTPase compare
Psyr_0153 -1.2 -2.2 conserved hypothetical protein compare
Psyr_2897 -1.2 -4.6 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2955 -1.2 -2.7 Surfeit locus 4-related protein compare
Psyr_1206 -1.2 -3.8 type III secretion protein HrcT compare
Psyr_3691 -1.2 -3.8 conserved hypothetical protein compare
Psyr_4687 -1.2 -3.7 biotin synthase compare
Psyr_3213 -1.2 -2.1 Propeptide, PepSY amd peptidase M4 compare
Psyr_0524 -1.2 -2.6 Lipopolysaccharide kinase compare
Psyr_1747 -1.2 -2.5 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2228 -1.2 -2.2 conserved hypothetical protein compare
Psyr_1402 -1.2 -1.4 SlyX compare
Psyr_2807 -1.2 -0.8 NinB compare
Psyr_1843 -1.2 -1.2 Protein of unknown function DUF1311 compare
Psyr_2787 -1.1 -1.6 hypothetical protein compare
Psyr_2879 -1.1 -1.3 VirK compare
Psyr_3585 -1.1 -1.6 Sua5/YciO/YrdC/YwlC compare
Psyr_3253 -1.1 -3.1 multisubunit potassium/proton antiporter, PhaC subunit compare
Psyr_1198 -1.1 -1.4 type III secretion protein HrpF compare
Psyr_3154 -1.1 -2.2 transcriptional regulator, TetR family compare
Psyr_3636 -1.1 -5.9 Polysaccharide biosynthesis protein CapD compare
Psyr_3739 -1.1 -1.7 conserved hypothetical protein compare
Psyr_0436 -1.1 -1.4 Phosphopantetheine-binding protein compare
Psyr_0838 -1.1 -1.5 Rieske [2Fe-2S] region compare
Psyr_4169 -1.1 -1.7 4-carboxymuconolactone decarboxylase compare
Psyr_0454 -1.1 -2.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1638 -1.1 -1.6 RNAse E compare
Psyr_3116 -1.1 -1.7 transcriptional regulator, CdaR family compare
Psyr_0552 -1.1 -2.5 conserved hypothetical protein compare
Psyr_2609 -1.1 -4.4 Alpha/beta hydrolase fold protein compare
Psyr_3673 -1.1 -1.0 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_2508 -1.1 -1.7 transcriptional regulator, IclR family compare
Psyr_0704 -1.1 -3.0 glutamate 5-kinase compare
Psyr_4601 -1.1 -1.4 hypothetical protein compare
Psyr_1666 -1.1 -1.7 Sporulation related protein compare
Psyr_2244 -1.1 -0.7 DNA topoisomerase III compare
Psyr_3411 -1.1 -2.2 conserved hypothetical protein compare
Psyr_4895 -1.1 -1.4 conserved hypothetical protein compare
Psyr_3336 -1.1 -2.7 transcriptional regulator, LacI family compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments