Experiment set7IT016 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.01 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3655 -4.1 -16.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3612 -4.0 -3.8 HflK protein compare
Pf6N2E2_2825 -3.9 -4.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_464 -3.9 -4.5 Sensory histidine kinase QseC compare
Pf6N2E2_1661 -3.8 -11.4 RND efflux system, inner membrane transporter CmeB conserved
Pf6N2E2_3611 -3.8 -2.5 HflC protein compare
Pf6N2E2_5430 -3.7 -12.9 Transglycosylase, Slt family compare
Pf6N2E2_4072 -3.7 -6.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_288 -3.5 -4.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_621 -3.4 -9.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4372 -3.3 -7.8 FIG00460773: hypothetical protein compare
Pf6N2E2_5340 -3.2 -5.7 Stringent starvation protein A compare
Pf6N2E2_625 -3.2 -7.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_624 -3.2 -8.5 hypothetical protein PA3071 compare
Pf6N2E2_463 -3.1 -8.8 Transcriptional regulatory protein RstA compare
Pf6N2E2_4187 -3.1 -6.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1660 -3.0 -4.9 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_622 -2.9 -4.2 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_620 -2.8 -8.6 BatD compare
Pf6N2E2_5014 -2.8 -2.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3826 -2.7 -7.4 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3656 -2.7 -7.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_623 -2.6 -2.1 FIG00954674: hypothetical protein compare
Pf6N2E2_4353 -2.5 -7.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4272 -2.3 -5.4 putative membrane protein compare
Pf6N2E2_2823 -2.3 -5.6 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4599 -2.3 -4.1 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5252 -2.1 -3.5 FIG00956396: hypothetical protein compare
Pf6N2E2_3696 -2.0 -1.9 hypothetical protein compare
Pf6N2E2_2574 -2.0 -2.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_4584 -2.0 -4.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4369 -1.9 -2.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5006 -1.9 -8.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2824 -1.9 -8.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5178 -1.9 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5406 -1.9 -3.9 FIG00958224: hypothetical protein compare
Pf6N2E2_2605 -1.8 -6.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2218 -1.7 -5.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3603 -1.6 -4.8 FIG003573: hypothetical protein compare
Pf6N2E2_3460 -1.6 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2967 -1.6 -1.7 Cold shock protein CspA compare
Pf6N2E2_5534 -1.5 -4.6 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3770 -1.5 -2.2 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_2473 -1.5 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_3825 -1.4 -4.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4797 -1.4 -2.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2277 -1.4 -2.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2217 -1.4 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5001 -1.4 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_16 -1.4 -2.1 hypothetical protein compare
Pf6N2E2_4414 -1.3 -2.8 FIG00953808: hypothetical protein compare
Pf6N2E2_285 -1.3 -3.3 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_4453 -1.3 -10.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5190 -1.3 -8.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2285 -1.3 -2.4 FIG00954079: hypothetical protein compare
Pf6N2E2_2274 -1.2 -5.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4618 -1.2 -4.1 Chemotaxis signal transduction protein compare
Pf6N2E2_3617 -1.2 -5.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3134 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_5714 -1.2 -2.6 Flavoprotein WrbA compare
Pf6N2E2_4352 -1.2 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2707 -1.2 -3.3 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3062 -1.2 -3.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2708 -1.2 -4.7 Lactam utilization protein LamB compare
Pf6N2E2_5544 -1.2 -5.8 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2181 -1.2 -2.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4607 -1.1 -2.8 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_3260 -1.1 -4.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3300 -1.1 -3.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4362 -1.1 -2.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5261 -1.1 -1.4 FIG00956983: hypothetical protein compare
Pf6N2E2_5605 -1.1 -3.2 FxsA protein compare
Pf6N2E2_1239 -1.1 -5.7 Putative TEGT family carrier/transport protein compare
Pf6N2E2_2189 -1.1 -3.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2706 -1.1 -3.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1545 -1.1 -3.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_586 -1.1 -6.1 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_4454 -1.0 -3.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4415 -1.0 -2.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_3908 -1.0 -5.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_248 -1.0 -6.1 hypothetical protein compare
Pf6N2E2_687 -1.0 -2.9 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_2753 -1.0 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_4706 -1.0 -2.6 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4155 -1.0 -6.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1691 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_4120 -0.9 -6.6 Trk system potassium uptake protein TrkA compare
Pf6N2E2_5520 -0.9 -4.1 Sensory box histidine kinase compare
Pf6N2E2_3607 -0.9 -4.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5727 -0.9 -4.5 FIG00955360: hypothetical protein compare
Pf6N2E2_2541 -0.9 -5.5 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf6N2E2_3151 -0.9 -2.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_82 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_75 -0.9 -3.0 Colicin V production protein compare
Pf6N2E2_4160 -0.9 -1.3 Cytochrome c5 compare
Pf6N2E2_613 -0.9 -1.6 lipoprotein, putative compare
Pf6N2E2_5758 -0.9 -2.3 FIG00957314: hypothetical protein compare
Pf6N2E2_2106 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_5733 -0.9 -3.9 NLP/P60 family protein compare
Pf6N2E2_405 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4279 -0.9 -5.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4585 -0.9 -6.2 Cell division protein FtsX compare
Pf6N2E2_3504 -0.9 -6.3 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_3257 -0.9 -2.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5728 -0.9 -3.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4278 -0.9 -6.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4181 -0.9 -1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_4534 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_3870 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_2634 -0.9 -5.6 Potassium uptake protein TrkH compare
Pf6N2E2_4993 -0.9 -2.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2606 -0.8 -3.9 hypothetical protein compare
Pf6N2E2_4365 -0.8 -4.3 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_5494 -0.8 -3.8 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3616 -0.8 -5.4 DNA mismatch repair protein MutL compare
Pf6N2E2_4075 -0.8 -3.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5679 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_4763 -0.8 -5.3 Biotin synthesis protein BioC compare
Pf6N2E2_2261 -0.8 -3.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_3258 -0.8 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4147 -0.8 -4.9 Fused spore maturation proteins A and B compare
Pf6N2E2_927 -0.8 -1.6 (AJ250023) putative polyketide synthase compare
Pf6N2E2_4635 -0.8 -3.9 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_4162 -0.8 -1.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5300 -0.8 -5.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5242 -0.8 -1.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3477 -0.8 -1.5 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2640 -0.8 -1.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4614 -0.7 -2.4 twitching motility protein PilH compare
Pf6N2E2_4999 -0.7 -3.7 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_5342 -0.7 -1.6 21 kDa hemolysin precursor compare
Pf6N2E2_1720 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_6065 -0.7 -1.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1718 -0.7 -2.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1582 -0.7 -2.2 HlyD family secretion protein compare
Pf6N2E2_1089 -0.7 -1.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3261 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_5241 -0.7 -1.6 Aminopeptidase N compare
Pf6N2E2_2344 -0.7 -4.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2845 -0.7 -4.4 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_4427 -0.7 -1.9 FIG00954215: hypothetical protein compare
Pf6N2E2_4277 -0.7 -5.2 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_1834 -0.7 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2013 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_2300 -0.7 -2.4 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_1714 -0.7 -2.7 FIG01218476: hypothetical protein compare
Pf6N2E2_2940 -0.7 -3.4 OmpA family protein compare
Pf6N2E2_1705 -0.7 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4146 -0.7 -1.6 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_4803 -0.7 -1.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4073 -0.7 -2.1 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_1169 -0.7 -1.4 TnpR protein compare
Pf6N2E2_28 -0.7 -1.6 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_3665 -0.7 -0.7 serine/threonine protein kinase compare
Pf6N2E2_2080 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_156 -0.7 -1.4 Carbon storage regulator compare
Pf6N2E2_3849 -0.6 -2.0 FIG00954739: hypothetical protein compare
Pf6N2E2_1188 -0.6 -2.5 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_603 -0.6 -2.4 FIG00953934: hypothetical protein compare
Pf6N2E2_4153 -0.6 -0.7 Sensory box histidine kinase compare
Pf6N2E2_2675 -0.6 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5757 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_1792 -0.6 -1.4 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_3574 -0.6 -4.8 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf6N2E2_2938 -0.6 -2.3 Outer membrane lipoprotein compare
Pf6N2E2_4743 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_5671 -0.6 -2.0 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1673 -0.6 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1492 -0.6 -2.0 No significant database matches compare
Pf6N2E2_1110 -0.6 -2.1 FIG00964414: hypothetical protein compare
Pf6N2E2_4761 -0.6 -4.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2219 -0.6 -0.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2487 -0.6 -0.8 FIG00956090: hypothetical protein compare
Pf6N2E2_2253 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_2870 -0.6 -2.1 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2474 -0.6 -4.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5522 -0.6 -2.5 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_3753 -0.6 -4.8 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_1153 -0.6 -2.5 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_3514 -0.6 -1.2 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4459 -0.6 -1.4 Transcriptional regulator, GntR family compare
Pf6N2E2_529 -0.6 -3.1 FIG00954439: hypothetical protein compare
Pf6N2E2_1195 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_3742 -0.6 -2.8 General secretion pathway protein H compare
Pf6N2E2_6045 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_3586 -0.6 -3.7 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_5061 -0.6 -2.3 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) compare
Pf6N2E2_2925 -0.6 -2.1 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) compare
Pf6N2E2_619 -0.6 -2.6 Exonuclease SbcD compare
Pf6N2E2_4617 -0.6 -5.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_453 -0.6 -1.9 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2970 -0.6 -1.6 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_4590 -0.6 -3.2 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_2388 -0.6 -2.2 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_5245 -0.6 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3106 -0.6 -2.5 hypothetical protein compare
Pf6N2E2_3156 -0.6 -2.7 POSSIBLE MEMBRANE PROTEIN compare
Pf6N2E2_1625 -0.6 -2.1 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5015 -0.6 -1.8 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_1441 -0.6 -1.3 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Spectinomycin dihydrochloride pentahydrate across organisms