Experiment set7IT015 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Lima bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -6.4 -4.0 anthranilate synthase, component II compare
Psyr_1984 -5.7 -3.9 3-isopropylmalate dehydratase, small subunit compare
Psyr_4270 -5.1 -6.0 serine hydroxymethyltransferase compare
Psyr_1983 -4.8 -5.6 3-isopropylmalate dehydratase, large subunit compare
Psyr_1985 -4.7 -9.6 3-isopropylmalate dehydrogenase compare
Psyr_4609 -4.4 -15.2 anthranilate synthase, component I compare
Psyr_0531 -4.4 -4.2 LmbE-like protein compare
Psyr_0167 -4.2 -5.6 hypothetical protein compare
Psyr_0378 -4.2 -10.2 Glycosyl transferase, family 2 compare
Psyr_0377 -4.2 -7.9 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4407 -4.1 -2.8 phosphoribosylamine--glycine ligase compare
Psyr_0034 -4.0 -6.1 tryptophan synthase, beta chain compare
Psyr_0219 -3.9 -14.0 phosphomannomutase compare
Psyr_1373 -3.9 -3.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4580 -3.8 -4.8 anthranilate phosphoribosyltransferase compare
Psyr_0529 -3.8 -7.2 Glycosyl transferase, group 1 compare
Psyr_3958 -3.8 -12.1 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_3008 -3.7 -8.1 Undecaprenyl-diphosphatase compare
Psyr_0915 -3.7 -12.4 NAD-dependent epimerase/dehydratase compare
Psyr_3886 -3.6 -2.5 methionyl-tRNA synthetase compare
Psyr_1668 -3.6 -9.4 amidophosphoribosyltransferase compare
Psyr_1669 -3.5 -11.6 O-succinylhomoserine sulfhydrylase compare
Psyr_4852 -3.4 -9.3 D-3-phosphoglycerate dehydrogenase compare
Psyr_1613 -3.4 -5.9 septum site-determining protein MinC compare
Psyr_1614 -3.4 -5.1 lipid A biosynthesis acyltransferase compare
Psyr_1350 -3.3 -4.5 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1663 -3.2 -4.6 phosphoribosylanthranilate isomerase compare
Psyr_4362 -3.2 -3.0 Rare lipoprotein A compare
Psyr_4144 -3.1 -1.5 Protein of unknown function DUF1239 compare
Psyr_1410 -3.1 -5.7 Holliday junction DNA helicase RuvB compare
Psyr_0917 -3.0 -9.3 ABC-2 compare
Psyr_1269 -2.9 -5.1 phosphoribosylformylglycinamidine synthase compare
Psyr_3287 -2.9 -3.5 DNA topoisomerase I compare
Psyr_4369 -2.9 -7.4 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0826 -2.9 -8.2 glucose-6-phosphate isomerase compare
Psyr_0918 -2.8 -13.4 ABC transporter compare
Psyr_1748 -2.8 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4683 -2.7 -5.1 dethiobiotin synthase compare
Psyr_4130 -2.7 -11.5 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1198 -2.7 -3.6 type III secretion protein HrpF compare
Psyr_0025 -2.7 -5.0 shikimate dehydrogenase compare
Psyr_1056 -2.7 -6.1 Poly(beta-D-mannuronate) lyase compare
Psyr_0474 -2.6 -9.2 homoserine O-acetyltransferase compare
Psyr_2461 -2.6 -5.1 Uncharacterized conserved protein UCP030820 compare
Psyr_2980 -2.6 -4.3 UDP-glucose pyrophosphorylase compare
Psyr_4686 -2.6 -6.4 8-amino-7-oxononanoate synthase compare
Psyr_1914 -2.5 -11.2 transaldolase compare
Psyr_0704 -2.5 -9.6 glutamate 5-kinase compare
Psyr_0473 -2.5 -6.1 Methionine biosynthesis MetW compare
Psyr_0033 -2.5 -5.0 tryptophan synthase, alpha chain compare
Psyr_0532 -2.4 -6.1 conserved hypothetical protein compare
Psyr_2137 -2.4 -3.6 molybdopterin molybdochelatase compare
Psyr_1257 -2.3 -8.3 2-isopropylmalate synthase compare
Psyr_3208 -2.3 -3.4 NADH dehydrogenase subunit M compare
Psyr_4018 -2.3 -9.0 Formyltetrahydrofolate deformylase compare
Psyr_4991 -2.3 -2.6 hypothetical protein compare
Psyr_0557 -2.2 -4.9 phosphoserine phosphatase compare
Psyr_3202 -2.2 -3.1 NADH dehydrogenase subunit G compare
Psyr_4687 -2.2 -8.4 biotin synthase compare
Psyr_4940 -2.1 -2.7 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_0846 -2.0 -11.0 acetolactate synthase, large subunit compare
Psyr_1054 -2.0 -6.6 alginate biosynthesis protein AlgJ compare
Psyr_1212 -2.0 -2.7 type III secretion protein HrpO compare
Psyr_4100 -1.9 -4.2 D-alanine--D-alanine ligase compare
Psyr_4203 -1.9 -2.7 SsrA-binding protein compare
Psyr_0454 -1.9 -5.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1408 -1.9 -2.1 Holliday junction endonuclease RuvC compare
Psyr_4408 -1.9 -7.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0914 -1.9 -9.1 Glycosyl transferase, group 1 compare
Psyr_0014 -1.8 -3.6 lipid A biosynthesis acyltransferase compare
Psyr_3146 -1.8 -2.0 general secretion pathway protein J, putative compare
Psyr_4684 -1.8 -2.6 biotin synthesis protein BioC compare
Psyr_1210 -1.7 -4.6 type III secretion protein HrcQa compare
Psyr_1304 -1.7 -2.2 CheW-like protein compare
Psyr_3174 -1.7 -5.0 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_0920 -1.6 -11.8 Glycosyl transferase, group 1 compare
Psyr_0796 -1.6 -5.4 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A compare
Psyr_5065 -1.6 -7.9 ATP-dependent DNA helicase UvrD compare
Psyr_2757 -1.6 -3.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0936 -1.6 -8.7 Glycosyl transferase, group 1 compare
Psyr_4833 -1.6 -2.6 histidine ammonia-lyase compare
Psyr_0848 -1.6 -7.8 ketol-acid reductoisomerase compare
Psyr_5133 -1.6 -4.8 tRNA modification GTPase trmE compare
Psyr_4893 -1.6 -2.1 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4194 -1.5 -3.5 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1053 -1.5 -5.9 alginate biosynthesis protein AlgF compare
Psyr_1217 -1.5 -2.1 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_0919 -1.5 -8.7 Chromosome segregation ATPase-like protein compare
Psyr_1062 -1.5 -8.9 alginate biosynthesis protein Alg8 compare
Psyr_1055 -1.5 -9.3 Membrane bound O-acyl transferase, MBOAT compare
Psyr_5029 -1.5 -2.6 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_2077 -1.5 -5.6 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0680 -1.5 -3.6 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_3637 -1.5 -8.8 Glycosyl transferase, family 4 compare
Psyr_2462 -1.4 -5.0 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0469 -1.4 -7.0 dihydroxyacid dehydratase compare
Psyr_3179 -1.4 -3.0 DNA translocase FtsK compare
Psyr_1747 -1.4 -3.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1060 -1.4 -7.1 Sel1-like repeat protein compare
Psyr_0478 -1.4 -8.4 pilus retraction ATPase PilT compare
Psyr_1058 -1.4 -6.7 Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis compare
Psyr_0831 -1.4 -2.0 Two-component response regulator CbrB compare
Psyr_3199 -1.4 -2.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4566 -1.4 -7.2 Peptidase M23B compare
Psyr_1401 -1.3 -3.5 Histidine triad (HIT) protein compare
Psyr_4140 -1.3 -2.0 Protein of unknown function DUF140 compare
Psyr_1751 -1.3 -3.8 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0534 -1.3 -9.1 membrane protein, putative compare
Psyr_1206 -1.3 -5.4 type III secretion protein HrcT compare
Psyr_0555 -1.3 -3.7 Protein of unknown function DUF330 compare
Psyr_2520 -1.3 -1.6 SOS-response transcriptional repressor, LexA compare
Psyr_3636 -1.3 -6.9 Polysaccharide biosynthesis protein CapD compare
Psyr_3290 -1.3 -3.5 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_0847 -1.3 -4.1 acetolactate synthase, small subunit compare
Psyr_1667 -1.3 -3.7 Colicin V production protein compare
Psyr_1247 -1.3 -1.8 conserved hypothetical protein compare
Psyr_2244 -1.3 -1.6 DNA topoisomerase III compare
Psyr_1205 -1.2 -6.4 type III secretion protein HrcU compare
Psyr_3955 -1.2 -4.9 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1059 -1.2 -5.6 alginate export porin compare
Psyr_4091 -1.2 -3.3 8-oxo-dGTPase compare
Psyr_0202 -1.2 -5.8 transcriptional regulator, LysR family compare
Psyr_4340 -1.2 -5.9 phosphomethylpyrimidine kinase, putative compare
Psyr_3882 -1.2 -1.7 conserved hypothetical protein compare
Psyr_5130 -1.2 -6.3 chromosome segregation ATPase compare
Psyr_1039 -1.2 -1.6 FecR protein compare
Psyr_3692 -1.2 -1.9 conserved hypothetical protein compare
Psyr_0849 -1.2 -6.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3347 -1.2 -6.7 transcriptional regulator, TetR family compare
Psyr_4118 -1.2 -5.0 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1227 -1.2 -2.6 Queuosine biosynthesis protein compare
Psyr_1216 -1.2 -6.2 type III secretion outer membrane protein PopN compare
Psyr_0951 -1.1 -2.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_3626 -1.1 -3.4 transcriptional regulator, MarR family compare
Psyr_1749 -1.1 -4.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_1196 -1.1 -2.6 type III secretion protein HrpD compare
Psyr_1063 -1.1 -7.1 GDP-mannose 6-dehydrogenase compare
Psyr_4139 -1.1 -4.7 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_4361 -1.1 -3.2 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_1061 -1.1 -3.9 alginate biosynthesis protein Alg44 compare
Psyr_0579 -1.1 -6.6 RNAse R compare
Psyr_4898 -1.1 -5.9 aromatic amino acid aminotransferase apoenzyme compare
Psyr_1057 -1.1 -4.6 alginate biosynthesis protein AlgX compare
Psyr_0263 -1.1 -2.5 Two-component response regulator AlgB compare
Psyr_4262 -1.1 -1.2 lipoprotein, putative compare
Psyr_5072 -1.1 -0.9 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4008 -1.1 -8.2 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_1544 -1.1 -3.1 SirA-like protein compare
Psyr_4141 -1.1 -3.5 ABC transporter compare
Psyr_4009 -1.1 -5.4 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3525 -1.1 -2.0 3-hydroxyisobutyrate dehydrogenase compare
Psyr_0811 -1.1 -4.0 Integral membrane protein TerC compare
Psyr_2973 -1.1 -1.9 Glyoxalase I compare
Psyr_3555 -1.0 -1.9 aspartate kinase compare
Psyr_0835 -1.0 -4.0 transcriptional regulator, TraR/DksA family compare
Psyr_2471 -1.0 -1.4 hydroxymethylglutaryl-CoA lyase compare
Psyr_2620 -1.0 -2.3 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1567 -1.0 -2.3 Uncharacterized conserved protein UCP006173 compare
Psyr_0916 -1.0 -5.4 GDP-mannose 4,6-dehydratase compare
Psyr_0201 -1.0 -4.5 ATP-dependent DNA helicase RecG compare
Psyr_4842 -1.0 -4.8 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_1215 -1.0 -4.8 Type III secretion protein HrcV compare
Psyr_0565 -1.0 -3.4 Protein of unknown function UPF0126 compare
Psyr_0259 -1.0 -1.6 Osmolarity sensor protein envZ compare
Psyr_0635 -1.0 -1.7 MaoC-like dehydratase compare
Psyr_0524 -1.0 -2.2 Lipopolysaccharide kinase compare
Psyr_4894 -1.0 -4.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4618 -1.0 -2.7 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4896 -1.0 -4.8 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4341 -1.0 -3.7 thiamine-phosphate diphosphorylase compare
Psyr_1211 -1.0 -2.8 type III secretion protein HrpP compare
Psyr_0070 -1.0 -1.8 hypothetical protein compare
Psyr_4416 -1.0 -3.0 precorrin-8X methylmutase compare
Psyr_2264 -1.0 -1.5 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_1780 -0.9 -1.2 transcriptional regulator, TetR family compare
Psyr_1200 -0.9 -5.3 outer-membrane type III secretion protein HrcC compare
Psyr_0535 -0.9 -1.5 toluene tolerance protein, putative compare
Psyr_0923 -0.9 -3.2 hypothetical protein compare
Psyr_2897 -0.9 -3.7 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2245 -0.9 -1.8 conserved domain protein compare
Psyr_1378 -0.9 -1.9 RecA protein compare
Psyr_3691 -0.9 -3.8 conserved hypothetical protein compare
Psyr_3844 -0.9 -3.3 conserved hypothetical protein compare
Psyr_1588 -0.9 -2.2 Putative exonuclease, RdgC compare
Psyr_4019 -0.9 -2.1 H-NS family protein MvaT compare
Psyr_4136 -0.9 -1.2 BolA-like protein compare
Psyr_4491 -0.9 -2.5 Deoxyribose-phosphate aldolase compare
Psyr_2155 -0.9 -2.3 Carbohydrate kinase, PfkB compare
Psyr_2820 -0.9 -2.2 RecT protein compare
Psyr_1998 -0.9 -1.2 lipoprotein, putative compare
Psyr_4464 -0.9 -1.0 lipoprotein, putative compare
Psyr_3034 -0.9 -2.5 conserved hypothetical protein compare
Psyr_4007 -0.9 -5.3 Secretion protein HlyD compare
Psyr_1615 -0.9 -2.4 Patatin compare
Psyr_0508 -0.9 -5.4 lyase, putative compare
Psyr_3255 -0.9 -1.8 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_1197 -0.9 -3.2 type III secretion protein HrpE compare
Psyr_1275 -0.9 -2.5 Protein of unknown function DUF1289 compare
Psyr_0758 -0.9 -6.6 beta-fructofuranosidase compare
Psyr_4480 -0.8 -1.4 outer membrane transport energization protein TonB compare


Specific Phenotypes

For 6 genes in this experiment