Experiment set7IT014 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Tetracycline hydrochloride 0.0004 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2824 -4.2 -11.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4153 -4.2 -2.9 Sensory box histidine kinase compare
Pf6N2E2_2967 -3.8 -3.7 Cold shock protein CspA compare
Pf6N2E2_3607 -3.7 -10.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5527 -3.5 -2.4 Cold shock protein CspC compare
Pf6N2E2_2825 -3.5 -4.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2823 -3.3 -6.0 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4362 -3.2 -4.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4072 -3.2 -6.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_623 -3.0 -2.0 FIG00954674: hypothetical protein compare
Pf6N2E2_3835 -3.0 -3.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_463 -3.0 -8.4 Transcriptional regulatory protein RstA compare
Pf6N2E2_5430 -3.0 -11.8 Transglycosylase, Slt family compare
Pf6N2E2_4187 -3.0 -5.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3264 -3.0 -3.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5178 -2.9 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2646 -2.9 -2.7 FIG00953416: hypothetical protein compare
Pf6N2E2_5242 -2.8 -3.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3060 -2.7 -2.6 Outer membrane protein H precursor compare
Pf6N2E2_5219 -2.7 -9.2 FIG140336: TPR domain protein compare
Pf6N2E2_4075 -2.7 -7.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3460 -2.7 -3.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5006 -2.6 -10.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4372 -2.6 -7.0 FIG00460773: hypothetical protein compare
Pf6N2E2_4369 -2.6 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_620 -2.6 -9.5 BatD compare
Pf6N2E2_3270 -2.5 -5.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_624 -2.5 -7.3 hypothetical protein PA3071 compare
Pf6N2E2_2973 -2.4 -4.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2217 -2.4 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5534 -2.4 -7.1 FIG000859: hypothetical protein YebC compare
Pf6N2E2_464 -2.3 -3.0 Sensory histidine kinase QseC compare
Pf6N2E2_5014 -2.2 -2.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4451 -2.2 -7.8 FIG139438: lipoprotein B compare
Pf6N2E2_2694 -2.2 -9.3 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_2218 -2.1 -5.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_625 -2.1 -5.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_1660 -2.0 -4.2 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_5340 -2.0 -4.8 Stringent starvation protein A compare
Pf6N2E2_4678 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_622 -2.0 -3.7 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4414 -1.9 -2.2 FIG00953808: hypothetical protein compare
Pf6N2E2_2320 -1.9 -3.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4276 -1.9 -5.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5727 -1.8 -6.5 FIG00955360: hypothetical protein compare
Pf6N2E2_1661 -1.8 -7.5 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4579 -1.8 -2.5 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_6140 -1.8 -1.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5846 -1.7 -10.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5987 -1.7 -5.1 OmpA family protein compare
Pf6N2E2_5183 -1.7 -11.4 Paraquat-inducible protein B compare
Pf6N2E2_5252 -1.7 -1.9 FIG00956396: hypothetical protein compare
Pf6N2E2_621 -1.7 -6.5 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5181 -1.6 -9.2 Paraquat-inducible protein A compare
Pf6N2E2_2605 -1.6 -4.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4417 -1.6 -4.6 Protein of unknown function DUF484 compare
Pf6N2E2_4352 -1.6 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2189 -1.6 -4.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3039 -1.5 -6.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4155 -1.5 -8.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_6057 -1.5 -3.6 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3603 -1.5 -6.0 FIG003573: hypothetical protein compare
Pf6N2E2_754 -1.4 -1.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_1083 -1.4 -2.5 hypothetical protein compare
Pf6N2E2_5845 -1.4 -5.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2440 -1.4 -1.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5182 -1.4 -6.6 Paraquat-inducible protein A compare
Pf6N2E2_3504 -1.4 -8.5 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_3261 -1.3 -4.3 hypothetical protein compare
Pf6N2E2_3062 -1.3 -3.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_6058 -1.3 -5.4 FIG139976: hypothetical protein compare
Pf6N2E2_5155 -1.3 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3763 -1.3 -2.7 hypothetical protein compare
Pf6N2E2_4607 -1.3 -4.2 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_2474 -1.3 -7.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2067 -1.2 -10.5 cis/trans isomerase compare
Pf6N2E2_1806 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_4743 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_3753 -1.2 -9.4 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_4647 -1.2 -8.5 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_3095 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_288 -1.2 -2.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_145 -1.2 -6.1 putative exported protein compare
Pf6N2E2_5646 -1.2 -1.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2176 -1.2 -2.8 Amidases related to nicotinamidase compare
Pf6N2E2_3260 -1.2 -4.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1162 -1.2 -1.9 Transmembrane amino acid efflux protein compare
Pf6N2E2_144 -1.2 -8.9 Uncharacterized protein YtfM precursor compare
Pf6N2E2_6045 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_5156 -1.2 -2.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4074 -1.2 -6.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_1735 -1.2 -2.8 PhnB protein compare
Pf6N2E2_4803 -1.1 -1.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4174 -1.1 -7.0 Methionine ABC transporter substrate-binding protein compare
Pf6N2E2_3484 -1.1 -7.2 Multidrug resistance transporter, Bcr/CflA family conserved
Pf6N2E2_2675 -1.1 -1.3 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3825 -1.1 -4.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_309 -1.1 -1.8 FIG00957702: hypothetical protein compare
Pf6N2E2_736 -1.1 -3.3 hypothetical protein compare
Pf6N2E2_4999 -1.1 -5.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2274 -1.1 -4.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_248 -1.1 -5.8 hypothetical protein compare
Pf6N2E2_3257 -1.1 -2.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2971 -1.1 -8.1 AmpG permease compare
Pf6N2E2_2285 -1.1 -1.2 FIG00954079: hypothetical protein compare
Pf6N2E2_3040 -1.0 -5.3 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2693 -1.0 -2.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3493 -1.0 -4.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_88 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_3696 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3833 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_2472 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_2201 -1.0 -3.0 Transmembrane regulator protein PrtR compare
Pf6N2E2_2845 -1.0 -6.2 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_2755 -1.0 -1.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2471 -1.0 -5.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2753 -1.0 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_2699 -1.0 -4.9 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_4068 -1.0 -7.5 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_3515 -1.0 -4.9 Probable transmembrane protein compare
Pf6N2E2_3612 -0.9 -2.4 HflK protein compare
Pf6N2E2_5015 -0.9 -3.2 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_3847 -0.9 -3.2 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_4416 -0.9 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_2552 -0.9 -4.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1171 -0.9 -2.3 LysR family transcriptional regulator PA2877 compare
Pf6N2E2_2200 -0.9 -1.3 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5406 -0.9 -2.0 FIG00958224: hypothetical protein compare
Pf6N2E2_5758 -0.9 -2.2 FIG00957314: hypothetical protein compare
Pf6N2E2_2038 -0.9 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3258 -0.9 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4365 -0.9 -3.9 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_2080 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_1343 -0.9 -2.6 Transcriptional regulator compare
Pf6N2E2_595 -0.9 -1.9 Arsenical resistance operon repressor compare
Pf6N2E2_2827 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_5346 -0.9 -2.3 rRNA small subunit methyltransferase I compare
Pf6N2E2_5338 -0.9 -5.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4159 -0.9 -2.1 Cytochrome c4 compare
Pf6N2E2_4147 -0.8 -5.8 Fused spore maturation proteins A and B compare
Pf6N2E2_2261 -0.8 -3.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_4969 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2480 -0.8 -1.1 FIG00957636: hypothetical protein compare
Pf6N2E2_5425 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_5640 -0.8 -1.9 FIG00955597: hypothetical protein compare
Pf6N2E2_127 -0.8 -1.6 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1972 -0.8 -1.9 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_2253 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_2869 -0.8 -1.0 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2706 -0.8 -1.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5103 -0.8 -1.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5862 -0.8 -1.9 Lipoprotein, putative compare
Pf6N2E2_6047 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_1450 -0.8 -1.3 FIG00960438: hypothetical protein compare
Pf6N2E2_724 -0.8 -1.6 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_3834 -0.8 -2.6 Lipoprotein NlpD compare
Pf6N2E2_3856 -0.8 -4.4 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_1441 -0.8 -1.9 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_865 -0.8 -1.7 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_5321 -0.8 -5.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2448 -0.8 -2.8 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_4537 -0.8 -1.4 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_2181 -0.7 -0.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3516 -0.7 -1.3 Probable transmembrane protein compare
Pf6N2E2_5499 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_5402 -0.7 -4.6 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_2533 -0.7 -4.6 Rhodanese domain protein UPF0176 compare
Pf6N2E2_2318 -0.7 -4.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_472 -0.7 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_4452 -0.7 -3.3 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf6N2E2_2072 -0.7 -2.3 hypothetical protein compare
Pf6N2E2_2381 -0.7 -2.4 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2470 -0.7 -3.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_453 -0.7 -2.1 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_5544 -0.7 -3.7 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2574 -0.7 -0.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_5319 -0.7 -3.8 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_6063 -0.7 -4.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4359 -0.7 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5780 -0.7 -4.2 Periplasmic protease compare
Pf6N2E2_2438 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_3021 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_1056 -0.7 -2.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2469 -0.7 -2.8 hypothetical protein compare
Pf6N2E2_4581 -0.7 -3.2 FIG015547: peptidase, M16 family compare
Pf6N2E2_1732 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_3144 -0.7 -3.7 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_2312 -0.7 -0.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_634 -0.7 -4.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_2211 -0.7 -3.7 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_5160 -0.7 -1.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2081 -0.7 -1.6 putative exported protein compare
Pf6N2E2_672 -0.7 -1.6 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_2970 -0.7 -1.6 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_4448 -0.6 -1.7 probable P23 protein compare
Pf6N2E2_3744 -0.6 -1.9 General secretion pathway protein F compare
Pf6N2E2_3248 -0.6 -1.7 Probable transmembrane protein compare
Pf6N2E2_3826 -0.6 -2.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4640 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_2180 -0.6 -1.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare


Specific Phenotypes

For 7 genes in this experiment

For stress Tetracycline hydrochloride in Pseudomonas fluorescens FW300-N2E2

For stress Tetracycline hydrochloride across organisms