Experiment set7IT014 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Lima bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -6.4 -4.0 anthranilate synthase, component II compare
Psyr_0531 -5.1 -3.5 LmbE-like protein compare
Psyr_4270 -5.0 -7.6 serine hydroxymethyltransferase compare
Psyr_1985 -4.9 -7.4 3-isopropylmalate dehydrogenase compare
Psyr_1984 -4.8 -4.6 3-isopropylmalate dehydratase, small subunit compare
Psyr_1983 -4.8 -5.7 3-isopropylmalate dehydratase, large subunit compare
Psyr_0167 -4.6 -5.5 hypothetical protein compare
Psyr_4580 -4.4 -5.2 anthranilate phosphoribosyltransferase compare
Psyr_4609 -4.4 -16.0 anthranilate synthase, component I compare
Psyr_3008 -4.3 -7.0 Undecaprenyl-diphosphatase compare
Psyr_0034 -4.2 -5.7 tryptophan synthase, beta chain compare
Psyr_0529 -4.2 -5.7 Glycosyl transferase, group 1 compare
Psyr_0025 -4.1 -6.2 shikimate dehydrogenase compare
Psyr_0378 -4.1 -9.9 Glycosyl transferase, family 2 compare
Psyr_0219 -4.0 -13.5 phosphomannomutase compare
Psyr_0915 -3.9 -12.9 NAD-dependent epimerase/dehydratase compare
Psyr_0377 -3.8 -9.7 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1748 -3.8 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1269 -3.7 -4.4 phosphoribosylformylglycinamidine synthase compare
Psyr_1373 -3.7 -4.3 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1668 -3.6 -9.7 amidophosphoribosyltransferase compare
Psyr_1614 -3.6 -4.8 lipid A biosynthesis acyltransferase compare
Psyr_4407 -3.5 -4.1 phosphoribosylamine--glycine ligase compare
Psyr_4852 -3.4 -7.9 D-3-phosphoglycerate dehydrogenase compare
Psyr_1350 -3.3 -5.0 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1663 -3.3 -5.5 phosphoribosylanthranilate isomerase compare
Psyr_0826 -3.2 -7.6 glucose-6-phosphate isomerase compare
Psyr_1613 -3.1 -5.7 septum site-determining protein MinC compare
Psyr_3958 -3.1 -12.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_0473 -3.1 -7.3 Methionine biosynthesis MetW compare
Psyr_3202 -3.0 -3.4 NADH dehydrogenase subunit G compare
Psyr_1056 -3.0 -6.7 Poly(beta-D-mannuronate) lyase compare
Psyr_1669 -3.0 -8.9 O-succinylhomoserine sulfhydrylase compare
Psyr_4130 -3.0 -13.5 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_0474 -3.0 -9.9 homoserine O-acetyltransferase compare
Psyr_1408 -2.9 -3.6 Holliday junction endonuclease RuvC compare
Psyr_1257 -2.9 -10.5 2-isopropylmalate synthase compare
Psyr_0918 -2.9 -13.6 ABC transporter compare
Psyr_4203 -2.8 -3.2 SsrA-binding protein compare
Psyr_0917 -2.7 -9.5 ABC-2 compare
Psyr_2461 -2.7 -4.4 Uncharacterized conserved protein UCP030820 compare
Psyr_4194 -2.7 -6.6 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4369 -2.6 -7.0 glutamate-5-semialdehyde dehydrogenase compare
Psyr_3886 -2.6 -2.2 methionyl-tRNA synthetase compare
Psyr_1410 -2.6 -5.8 Holliday junction DNA helicase RuvB compare
Psyr_0033 -2.5 -5.2 tryptophan synthase, alpha chain compare
Psyr_4683 -2.5 -5.2 dethiobiotin synthase compare
Psyr_4408 -2.5 -9.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4684 -2.4 -4.1 biotin synthesis protein BioC compare
Psyr_3287 -2.3 -3.2 DNA topoisomerase I compare
Psyr_4018 -2.3 -9.0 Formyltetrahydrofolate deformylase compare
Psyr_0532 -2.3 -6.1 conserved hypothetical protein compare
Psyr_4362 -2.3 -4.2 Rare lipoprotein A compare
Psyr_1212 -2.3 -3.3 type III secretion protein HrpO compare
Psyr_0070 -2.3 -2.9 hypothetical protein compare
Psyr_4687 -2.2 -8.2 biotin synthase compare
Psyr_1054 -2.2 -8.7 alginate biosynthesis protein AlgJ compare
Psyr_0704 -2.1 -8.6 glutamate 5-kinase compare
Psyr_1914 -2.1 -9.1 transaldolase compare
Psyr_2980 -2.1 -3.1 UDP-glucose pyrophosphorylase compare
Psyr_4991 -2.1 -2.4 hypothetical protein compare
Psyr_0846 -2.1 -10.0 acetolactate synthase, large subunit compare
Psyr_1217 -2.0 -4.1 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_0454 -2.0 -5.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4686 -2.0 -6.1 8-amino-7-oxononanoate synthase compare
Psyr_1198 -2.0 -2.6 type III secretion protein HrpF compare
Psyr_3208 -2.0 -2.8 NADH dehydrogenase subunit M compare
Psyr_0557 -1.9 -3.7 phosphoserine phosphatase compare
Psyr_0014 -1.9 -4.5 lipid A biosynthesis acyltransferase compare
Psyr_4940 -1.9 -3.1 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_4100 -1.8 -7.0 D-alanine--D-alanine ligase compare
Psyr_1055 -1.8 -11.2 Membrane bound O-acyl transferase, MBOAT compare
Psyr_0848 -1.7 -8.1 ketol-acid reductoisomerase compare
Psyr_3174 -1.7 -4.8 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_3179 -1.7 -3.2 DNA translocase FtsK compare
Psyr_5132 -1.7 -3.4 Glucose-inhibited division protein A subfamily compare
Psyr_2312 -1.7 -1.5 Protein of unknown function DUF24 compare
Psyr_1544 -1.7 -3.4 SirA-like protein compare
Psyr_1747 -1.7 -4.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1247 -1.7 -2.8 conserved hypothetical protein compare
Psyr_0469 -1.7 -8.6 dihydroxyacid dehydratase compare
Psyr_1053 -1.6 -6.1 alginate biosynthesis protein AlgF compare
Psyr_0914 -1.6 -7.9 Glycosyl transferase, group 1 compare
Psyr_0796 -1.6 -6.7 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A compare
Psyr_0936 -1.6 -8.7 Glycosyl transferase, group 1 compare
Psyr_5130 -1.6 -8.1 chromosome segregation ATPase compare
Psyr_0919 -1.6 -9.2 Chromosome segregation ATPase-like protein compare
Psyr_2462 -1.6 -5.9 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1216 -1.6 -7.8 type III secretion outer membrane protein PopN compare
Psyr_1121 -1.6 -2.1 6-phosphogluconolactonase compare
Psyr_0724 -1.6 -2.9 conserved hypothetical protein compare
Psyr_1719 -1.6 -2.5 conserved hypothetical protein compare
Psyr_4566 -1.6 -7.5 Peptidase M23B compare
Psyr_1057 -1.5 -6.7 alginate biosynthesis protein AlgX compare
Psyr_4842 -1.5 -6.8 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_0920 -1.5 -10.8 Glycosyl transferase, group 1 compare
Psyr_0916 -1.4 -7.9 GDP-mannose 4,6-dehydratase compare
Psyr_3636 -1.4 -8.0 Polysaccharide biosynthesis protein CapD compare
Psyr_0951 -1.4 -1.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1060 -1.4 -6.9 Sel1-like repeat protein compare
Psyr_2137 -1.4 -1.6 molybdopterin molybdochelatase compare
Psyr_3637 -1.4 -8.5 Glycosyl transferase, family 4 compare
Psyr_4340 -1.4 -6.1 phosphomethylpyrimidine kinase, putative compare
Psyr_0137 -1.4 -1.1 outer membrane transport energization protein ExbD compare
Psyr_1062 -1.4 -8.0 alginate biosynthesis protein Alg8 compare
Psyr_1751 -1.4 -3.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1210 -1.3 -3.1 type III secretion protein HrcQa compare
Psyr_1401 -1.3 -4.4 Histidine triad (HIT) protein compare
Psyr_0268 -1.3 -2.5 DSBA oxidoreductase compare
Psyr_0555 -1.3 -4.3 Protein of unknown function DUF330 compare
Psyr_0847 -1.3 -5.1 acetolactate synthase, small subunit compare
Psyr_3932 -1.3 -2.5 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4341 -1.3 -4.9 thiamine-phosphate diphosphorylase compare
Psyr_3347 -1.3 -7.2 transcriptional regulator, TetR family compare
Psyr_5065 -1.3 -5.7 ATP-dependent DNA helicase UvrD compare
Psyr_0201 -1.3 -4.7 ATP-dependent DNA helicase RecG compare
Psyr_3620 -1.3 -2.5 hypothetical protein compare
Psyr_0534 -1.3 -9.0 membrane protein, putative compare
Psyr_1749 -1.2 -6.0 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_4139 -1.2 -4.9 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_4893 -1.2 -1.4 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1556 -1.2 -1.9 hypothetical protein compare
Psyr_2540 -1.2 -1.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2244 -1.2 -1.8 DNA topoisomerase III compare
Psyr_1059 -1.2 -6.0 alginate export porin compare
Psyr_1215 -1.2 -6.5 Type III secretion protein HrcV compare
Psyr_3947 -1.2 -1.8 Methyltransferase, putative compare
Psyr_1211 -1.2 -3.0 type III secretion protein HrpP compare
Psyr_3450 -1.2 -3.1 Hpt compare
Psyr_0680 -1.1 -3.4 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_3255 -1.1 -2.5 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_1337 -1.1 -2.0 Conserved hypothetical protein ArsC related protein compare
Psyr_1058 -1.1 -6.3 Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis compare
Psyr_1206 -1.1 -4.0 type III secretion protein HrcT compare
Psyr_1063 -1.1 -7.4 GDP-mannose 6-dehydrogenase compare
Psyr_4894 -1.1 -5.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_1530 -1.1 -1.9 hypothetical protein compare
Psyr_1988 -1.1 -2.5 2-keto-3-deoxy-phosphogalactonate aldolase compare
Psyr_3121 -1.1 -2.7 Protein of unknown function DUF1345 compare
Psyr_1395 -1.1 -4.9 virulence compare
Psyr_1903 -1.1 -2.7 conserved hypothetical protein compare
Psyr_4491 -1.1 -2.0 Deoxyribose-phosphate aldolase compare
Psyr_1205 -1.1 -5.6 type III secretion protein HrcU compare
Psyr_4008 -1.1 -8.0 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_0923 -1.1 -4.4 hypothetical protein compare
Psyr_0444 -1.1 -1.0 Malonate decarboxylase delta subunit compare
Psyr_0524 -1.1 -2.8 Lipopolysaccharide kinase compare
Psyr_1268 -1.1 -4.7 extracellular solute-binding protein, family 3:SLT compare
Psyr_0508 -1.1 -5.7 lyase, putative compare
Psyr_3199 -1.0 -2.4 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1213 -1.0 -3.4 type III secretion cytoplasmic ATPase HrcN compare
Psyr_0565 -1.0 -3.8 Protein of unknown function UPF0126 compare
Psyr_4009 -1.0 -5.3 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1162 -1.0 -2.9 conserved hypothetical protein compare
Psyr_0202 -1.0 -6.1 transcriptional regulator, LysR family compare
Psyr_3691 -1.0 -3.4 conserved hypothetical protein compare
Psyr_0259 -1.0 -1.9 Osmolarity sensor protein envZ compare
Psyr_1419 -1.0 -1.4 preQ(0) biosynthesis protein QueC compare
Psyr_3673 -1.0 -1.3 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_4300 -1.0 -2.0 DNA polymerase III, epsilon subunit compare
Psyr_0831 -1.0 -1.8 Two-component response regulator CbrB compare
Psyr_3090 -1.0 -2.2 hypothetical protein compare
Psyr_3955 -1.0 -4.3 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_5133 -1.0 -2.9 tRNA modification GTPase trmE compare
Psyr_0478 -1.0 -4.9 pilus retraction ATPase PilT compare
Psyr_4140 -1.0 -1.6 Protein of unknown function DUF140 compare
Psyr_2752 -1.0 -1.9 conserved hypothetical protein compare
Psyr_3954 -1.0 -3.8 GTP-binding protein LepA compare
Psyr_4833 -1.0 -2.9 histidine ammonia-lyase compare
Psyr_0528 -1.0 -2.1 Carbamoyltransferase compare
Psyr_4278 -1.0 -1.9 regulatory protein, LuxR compare
Psyr_4896 -1.0 -4.0 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0827 -1.0 -2.6 pantothenate synthetase compare
Psyr_0579 -1.0 -5.8 RNAse R compare
Psyr_4015 -1.0 -1.7 conserved domain protein compare
Psyr_1148 -1.0 -4.6 branched chain amino acid aminotransferase apoenzyme compare
Psyr_4091 -0.9 -2.4 8-oxo-dGTPase compare
Psyr_1615 -0.9 -2.5 Patatin compare
Psyr_0176 -0.9 -1.8 conserved hypothetical protein compare
Psyr_4882 -0.9 -4.4 protein translocase subunit secB compare
Psyr_1588 -0.9 -1.8 Putative exonuclease, RdgC compare
Psyr_1218 -0.9 -5.0 type III helper protein HrpK1 compare
Psyr_3419 -0.9 -3.2 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_0982 -0.9 -1.9 conserved hypothetical protein compare
Psyr_1039 -0.9 -1.2 FecR protein compare
Psyr_4740 -0.9 -2.5 thiazole-phosphate synthase compare
Psyr_4158 -0.9 -4.7 conserved hypothetical protein compare
Psyr_3906 -0.9 -1.2 regulatory protein, DeoR compare
Psyr_1200 -0.9 -4.7 outer-membrane type III secretion protein HrcC compare
Psyr_3212 -0.9 -4.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3701 -0.9 -1.5 thioredoxin, putative compare
Psyr_2851 -0.9 -1.6 conserved hypothetical protein compare
Psyr_2620 -0.9 -1.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3145 -0.9 -4.0 general secretion pathway protein K, putative compare
Psyr_0535 -0.9 -1.6 toluene tolerance protein, putative compare
Psyr_1722 -0.9 -2.8 Amidohydrolase 2 compare
Psyr_0567 -0.9 -2.4 Protein of unknown function UPF0031:YjeF-related protein, N-terminal compare
Psyr_0261 -0.9 -3.0 conserved hypothetical protein compare
Psyr_1097 -0.9 -1.5 glycine cleavage system H protein compare
Psyr_4019 -0.9 -2.6 H-NS family protein MvaT compare


Specific Phenotypes

For 7 genes in this experiment