Experiment set7IT014 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Lima bean

200 most detrimental genes:

  gene name fitness t score description  
Psyr_1017 +1.5 2.0 type III effector HopJ1 compare
Psyr_4920 +1.5 3.5 conserved hypothetical bacteriophage protein compare
Psyr_4634 +1.3 1.3 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3028 +1.1 2.6 Protein of unknown function DUF28 compare
Psyr_2062 +1.1 1.8 DoxD-like family protein compare
Psyr_5078 +1.1 2.8 conserved hypothetical protein compare
Psyr_2202 +1.1 2.2 ABC transporter compare
Psyr_1802 +1.1 1.9 transcriptional regulator, AsnC family compare
Psyr_3081 +1.0 3.8 Secretion protein HlyD compare
Psyr_4682 +1.0 1.6 conserved hypothetical protein compare
Psyr_2578 +1.0 2.0 regulatory protein, LuxR compare
Psyr_4087 +1.0 1.8 Protein of unknown function DUF520 compare
Psyr_3473 +1.0 2.6 Flagellar P-ring protein compare
Psyr_2872 +0.9 1.8 hypothetical protein compare
Psyr_3342 +0.9 1.4 conserved hypothetical protein compare
Psyr_4455 +0.9 1.9 conserved hypothetical protein compare
Psyr_3808 +0.9 1.3 hypothetical protein compare
Psyr_1694 +0.9 2.8 Rhomboid-like protein compare
Psyr_RNA61 +0.9 2.7 tRNA-Gly compare
Psyr_2694 +0.8 2.2 conserved hypothetical protein compare
Psyr_4051 +0.8 1.6 transcriptional regulator, ArsR family compare
Psyr_1594 +0.8 3.3 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type compare
Psyr_2982 +0.8 1.9 conserved hypothetical protein compare
Psyr_3118 +0.8 1.8 transcriptional regulator, GntR family compare
Psyr_3702 +0.8 1.9 Arsenate reductase compare
Psyr_4822 +0.8 1.2 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_3458 +0.8 1.4 Flagellar hook-basal body complex protein FliE compare
Psyr_3446 +0.8 1.3 Surface presentation of antigens (SPOA) protein compare
Psyr_3023 +0.8 2.0 conserved hypothetical protein compare
Psyr_1547 +0.8 2.4 glycine cleavage system transcriptional repressor compare
Psyr_0907 +0.8 1.6 conserved hypothetical protein compare
Psyr_2069 +0.8 1.5 conserved hypothetical protein compare
Psyr_4001 +0.8 1.7 conserved domain protein compare
Psyr_2114 +0.8 3.0 two component transcriptional regulator, LuxR family compare
Psyr_0487 +0.8 1.6 glutathione synthase compare
Psyr_2255 +0.8 1.8 ABC transporter compare
Psyr_2059 +0.8 2.8 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_1967 +0.8 2.9 Twin-arginine translocation pathway signal compare
Psyr_1388 +0.7 2.2 Protein of unknown function UPF0066 compare
Psyr_0076 +0.7 1.4 Xanthine phosphoribosyltransferase compare
Psyr_1844 +0.7 3.0 conserved hypothetical protein compare
Psyr_3840 +0.7 2.3 conserved hypothetical protein compare
Psyr_1019 +0.7 2.4 Dihydroneopterin aldolase compare
Psyr_4766 +0.7 3.0 L-threonine aldolase compare
Psyr_5135 +0.7 1.0 Protein of unknown function DUF37 compare
Psyr_4620 +0.7 2.2 conserved hypothetical protein compare
Psyr_3558 +0.7 2.2 6,7-dimethyl-8-ribityllumazine synthase compare
Psyr_0085 +0.7 2.2 conserved hypothetical protein compare
Psyr_4598 +0.7 2.2 lipoprotein, putative compare
Psyr_3228 +0.7 2.4 Glycosyl transferase, group 1 compare
Psyr_2259 +0.7 2.0 Beta-lactamase-like protein compare
Psyr_1022 +0.7 1.5 conserved hypothetical protein compare
Psyr_3358 +0.7 1.3 transmembrane pair compare
Psyr_3480 +0.7 1.6 Flagellar basal-body rod protein FlgC compare
Psyr_1997 +0.7 2.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_2415 +0.7 2.4 hypothetical protein compare
Psyr_1725 +0.7 1.8 Protein of unknown function DUF204 compare
Psyr_5071 +0.7 2.1 conserved hypothetical protein compare
Psyr_2388 +0.7 3.1 Twin-arginine translocation pathway signal compare
Psyr_2765 +0.7 1.5 conserved domain protein compare
Psyr_3001 +0.7 2.2 Glycosyl transferase, family 2 compare
Psyr_0441 +0.7 1.6 conserved hypothetical protein compare
Psyr_1616 +0.7 1.1 Rieske [2Fe-2S] region compare
Psyr_1675 +0.7 3.2 2,4-dienoyl-CoA reductase compare
Psyr_2401 +0.7 2.0 extracellular solute-binding protein, family 1 compare
Psyr_3661 +0.6 1.3 Fumarate hydratase, class II compare
Psyr_2584 +0.6 2.5 IucA/IucC compare
Psyr_2396 +0.6 1.8 Tartrate dehydrogenase compare
Psyr_2802 +0.6 1.6 lipoprotein, putative compare
Psyr_1871 +0.6 2.2 Transglutaminase-like protein compare
Psyr_2808 +0.6 1.2 hypothetical protein compare
Psyr_3299 +0.6 2.6 two component transcriptional regulator, LuxR family compare
Psyr_2514 +0.6 1.5 ABC transporter compare
Psyr_3934 +0.6 0.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_2737 +0.6 1.5 hypothetical protein compare
Psyr_3688 +0.6 1.0 conserved hypothetical protein compare
Psyr_3854 +0.6 0.7 OmpA/MotB compare
Psyr_1532 +0.6 2.6 hypothetical protein compare
Psyr_2117 +0.6 1.3 conserved hypothetical protein compare
Psyr_3233 +0.6 1.6 FMN reductase compare
Psyr_1158 +0.6 1.9 Gluconate transporter compare
Psyr_2389 +0.6 2.1 oxidoreductase, molybdopterin-binding subunit, putative compare
Psyr_3102 +0.6 2.1 transcriptional regulator, LysR family compare
Psyr_0485 +0.6 2.2 Protein of unknown function DUF179 compare
Psyr_1932 +0.6 2.4 CDS compare
Psyr_4115 +0.6 1.1 phosphoheptose isomerase compare
Psyr_1154 +0.6 1.1 Copper/Zinc superoxide dismutase compare
Psyr_2938 +0.6 1.4 transcriptional regulator, LysR family compare
Psyr_2989 +0.6 2.1 6-phosphogluconate dehydrogenase (decarboxylating) compare
Psyr_0428 +0.6 2.2 Monooxygenase, FAD-binding protein compare
Psyr_1678 +0.6 0.8 Hypothetical protein compare
Psyr_3670 +0.6 3.1 Glutathione peroxidase compare
Psyr_2434 +0.6 1.1 Carbohydrate kinase, PfkB compare
Psyr_3489 +0.6 1.5 FlgN compare
Psyr_2107 +0.6 1.6 Ribosome modulation factor compare
Psyr_0081 +0.6 1.1 ABC transporter compare
Psyr_3598 +0.6 2.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3005 +0.6 1.2 3-oxoadipate enol-lactonase compare
Psyr_1050 +0.6 2.1 conserved hypothetical protein compare
Psyr_4454 +0.6 1.4 HupE/UreJ protein compare
Psyr_3935 +0.5 2.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_1686 +0.5 1.6 Metallophosphoesterase compare
Psyr_0690 +0.5 1.6 3-hydroxyisobutyrate dehydrogenase compare
Psyr_4727 +0.5 1.6 glutathione S-transferase, putative compare
Psyr_2554 +0.5 1.6 Fatty acid desaturase compare
Psyr_4586 +0.5 1.5 tail protein, putative compare
Psyr_3369 +0.5 1.4 Twin-arginine translocation pathway signal:Tat-translocated enzyme:Dyp-type peroxidase compare
Psyr_3597 +0.5 0.8 ABC transporter compare
Psyr_4380 +0.5 1.6 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_3240 +0.5 1.1 CTP synthase compare
Psyr_3250 +0.5 1.6 Helix-turn-helix motif protein compare
Psyr_3031 +0.5 1.2 Thiolase compare
Psyr_2418 +0.5 2.6 shikimate dehydrogenase compare
Psyr_0170 +0.5 1.5 heat shock protein Hsp15 compare
Psyr_0789 +0.5 2.0 chemotaxis sensory transducer compare
Psyr_0264 +0.5 2.0 Alginate biosynthesis sensor protein KinB compare
Psyr_0044 +0.5 0.6 transferase hexapeptide repeat protein compare
Psyr_3367 +0.5 1.6 Iron permease FTR1 compare
Psyr_2663 +0.5 2.3 hypothetical protein compare
Psyr_2829 +0.5 1.3 conserved hypothetical protein compare
Psyr_3652 +0.5 1.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_2876 +0.5 2.3 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
Psyr_3284 +0.5 1.9 SOS cell division inhibitor SulA compare
Psyr_0561 +0.5 2.8 chemotaxis motA protein compare
Psyr_3585 +0.5 1.4 Sua5/YciO/YrdC/YwlC compare
Psyr_4788 +0.5 1.2 lipoprotein, putative compare
Psyr_3866 +0.5 2.0 conserved hypothetical protein compare
Psyr_0613 +0.5 1.6 conserved hypothetical protein compare
Psyr_2594 +0.5 1.1 unknown conserved protein in bacilli compare
Psyr_3085 +0.5 1.9 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0668 +0.5 2.7 Sodium/calcium exchanger membrane region compare
Psyr_0769 +0.5 1.3 conserved hypothetical membrane-anchored protein compare
Psyr_3986 +0.5 1.4 GCN5-related N-acetyltransferase compare
Psyr_2184 +0.5 1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_4860 +0.5 0.6 Integrase, catalytic region compare
Psyr_1112 +0.5 2.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0791 +0.5 0.6 MOSC compare
Psyr_5055 +0.5 1.7 YeeE/YedE compare
Psyr_3395 +0.5 1.4 FlhB domain protein compare
Psyr_1774 +0.5 1.1 Mg2+ transporter protein, CorA-like protein compare
Psyr_2403 +0.5 1.4 Protein of unknown function DUF1330 compare
Psyr_1949 +0.5 1.2 ABC-3 compare
Psyr_0231 +0.5 1.2 conserved hypothetical protein compare
Psyr_2364 +0.5 1.7 conserved hypothetical protein compare
Psyr_2751 +0.5 2.4 Phage integrase:Phage integrase, N-terminal SAM-like protein compare
Psyr_1152 +0.5 1.7 transcriptional regulator, ArsR family compare
Psyr_2779 +0.5 0.9 Phage minor tail compare
Psyr_1783 +0.5 1.4 CDS compare
Psyr_2419 +0.5 1.1 Protein of unknown function DUF480 compare
Psyr_1202 +0.5 0.8 negative regulator of hrp expression HrpV compare
Psyr_4077 +0.5 1.3 Methylated-DNA-[protein]-cysteine S-methyltransferase compare
Psyr_0439 +0.5 2.0 conserved hypothetical protein compare
Psyr_2634 +0.5 2.6 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_2569 +0.5 1.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_3841 +0.5 0.9 conserved hypothetical protein compare
Psyr_2650 +0.5 1.9 hypothetical protein compare
Psyr_1222 +0.5 0.9 CDS compare
Psyr_2617 +0.5 1.1 Secretion protein HlyD compare
Psyr_2075 +0.5 1.7 5-nucleotidase compare
Psyr_4434 +0.5 1.8 GCN5-related N-acetyltransferase compare
Psyr_1791 +0.5 1.1 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_0785 +0.5 1.5 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_2497 +0.5 1.5 lipoprotein, putative compare
Psyr_1799 +0.5 2.1 Protein of unknown function DUF6 compare
Psyr_2593 +0.5 1.4 ABC transporter compare
Psyr_2827 +0.5 1.8 phage-related protein compare
Psyr_4774 +0.5 0.9 Hypothetical protein compare
Psyr_4411 +0.5 2.4 conserved hypothetical protein compare
Psyr_3330 +0.5 2.6 4-hydroxyphenylpyruvate dioxygenase compare
Psyr_0463 +0.5 1.8 Gluconate transporter compare
Psyr_1431 +0.5 1.8 hypothetical protein compare
Psyr_2628 +0.5 1.2 ABC transporter compare
Psyr_1316 +0.5 2.1 OmpA/MotB compare
Psyr_2927 +0.5 0.8 transcriptional regulator, TetR family compare
Psyr_3037 +0.5 2.7 membrane protein, putative compare
Psyr_4254 +0.5 1.0 conserved hypothetical protein compare
Psyr_0418 +0.5 2.1 conserved domain protein compare
Psyr_0642 +0.5 1.2 conserved hypothetical protein compare
Psyr_3555 +0.5 0.8 aspartate kinase compare
Psyr_3824 +0.5 2.1 conserved hypothetical protein compare
Psyr_2344 +0.5 1.1 CDS compare
Psyr_1729 +0.5 1.5 transcriptional regulator, MarR family compare
Psyr_0078 +0.5 2.1 Beta-lactamase-like protein compare
Psyr_4013 +0.5 1.9 Glutaconate CoA-transferase compare
Psyr_3542 +0.4 2.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_4330 +0.4 1.4 conserved domain protein compare
Psyr_3445 +0.4 1.6 Flagellar biosynthesis protein, FliO compare
Psyr_1013 +0.4 0.9 hypothetical protein compare
Psyr_2356 +0.4 1.3 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_3796 +0.4 1.4 transcriptional regulator, LysR family compare
Psyr_4978 +0.4 1.0 hypothetical protein compare
Psyr_4939 +0.4 1.3 conserved hypothetical protein compare
Psyr_0510 +0.4 1.3 conserved hypothetical protein compare
Psyr_3110 +0.4 0.9 Nucleoside 2-deoxyribosyltransferase compare
Psyr_5062 +0.4 1.4 transcriptional regulator, LysR family compare
Psyr_3770 +0.4 1.8 Propeptide, PepSY amd peptidase M4 compare
Psyr_0958 +0.4 2.7 amine oxidase, flavin-containing compare
Psyr_1948 +0.4 1.3 ABC transporter, periplasmic substrate-binding protein, putative compare
Psyr_0814 +0.4 1.7 Protein of unknown function DUF124 compare
Psyr_1689 +0.4 1.4 conserved hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment