Experiment set7IT014 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 2g/L casamino acids 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMP_RS01795 -6.2 -2.3 methanogenesis marker 6 protein compare
MMP_RS08720 -4.5 -2.5 4Fe-4S binding protein compare
MMP_RS03445 -4.5 -1.4 methanogenesis marker 17 protein compare
MMP_RS01020 -4.3 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05515 -4.2 -12.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06350 -4.1 -8.1 HesA/MoeB/ThiF family protein compare
MMP_RS07005 -4.1 -0.9 4Fe-4S binding protein compare
MMP_RS07635 -4.1 -14.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03015 -4.1 -14.3 GTP 3' 8-cyclase MoaA compare
MMP_RS02240 -4.0 -4.5 methanogenesis marker 7 protein compare
MMP_RS08715 -3.9 -3.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02145 -3.9 -14.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS02010 -3.8 -10.1 PHP domain-containing protein compare
MMP_RS06895 -3.8 -2.7 selenocysteine-specific translation elongation factor compare
MMP_RS06120 -3.8 -3.5 UPF0147 family protein compare
MMP_RS01175 -3.7 -6.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05550 -3.7 -1.1 cation:proton antiporter compare
MMP_RS01610 -3.7 -5.9 hypothetical protein compare
MMP_RS08650 -3.6 -4.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06355 -3.6 -5.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03315 -3.5 -1.9 ferrous iron transport protein A compare
MMP_RS00110 -3.5 -4.9 hypothetical protein compare
MMP_RS03025 -3.5 -7.2 molybdenum cofactor guanylyltransferase compare
MMP_RS06625 -3.5 -2.6 DNA primase compare
MMP_RS06295 -3.4 -10.9 methanogenesis marker 14 protein compare
MMP_RS03960 -3.4 -1.6 hypothetical protein compare
MMP_RS06730 -3.3 -3.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS01265 -3.3 -3.5 hypothetical protein compare
MMP_RS08300 -3.3 -1.7 metal-sulfur cluster assembly factor compare
MMP_RS07380 -3.3 -3.6 transcription elongation factor Spt5 compare
MMP_RS03475 -3.3 -1.2 hypothetical protein compare
MMP_RS07630 -3.2 -1.9 ATP-binding cassette domain-containing protein compare
MMP_RS02195 -3.1 -5.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08635 -3.0 -3.0 UbiA family prenyltransferase compare
MMP_RS08790 -3.0 -3.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS03400 -2.9 -3.9 archease compare
MMP_RS07600 -2.9 -3.7 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08435 -2.9 -2.9 Era-like GTP-binding protein compare
MMP_RS01220 -2.8 -12.0 hypothetical protein compare
MMP_RS06400 -2.8 -1.9 4Fe-4S binding protein compare
MMP_RS03640 -2.8 -4.7 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07750 -2.8 -6.1 DUF357 domain-containing protein compare
MMP_RS00040 -2.8 -4.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS00300 -2.8 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03035 -2.8 -5.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02280 -2.7 -1.4 DUF211 domain-containing protein compare
MMP_RS01725 -2.7 -6.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS06270 -2.7 -8.0 TIGR00300 family protein compare
MMP_RS00685 -2.7 -5.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05265 -2.7 -3.3 2-isopropylmalate synthase compare
MMP_RS01830 -2.6 -2.0 tRNA-Val compare
MMP_RS04710 -2.6 -3.0 hypothetical protein compare
MMP_RS07545 -2.6 -1.5 HTH domain-containing protein compare
MMP_RS04685 -2.6 -4.2 DUF126 domain-containing protein compare
MMP_RS02355 -2.6 -5.0 30S ribosomal protein S27ae compare
MMP_RS01755 -2.6 -2.4 DUF2097 domain-containing protein compare
MMP_RS01225 -2.6 -6.8 DUF5379 domain-containing protein compare
MMP_RS00695 -2.6 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08440 -2.6 -4.1 cell division protein SepF compare
MMP_RS08095 -2.6 -9.2 dethiobiotin synthase compare
MMP_RS08210 -2.6 -2.3 phosphatidylglycerophosphatase A compare
MMP_RS06285 -2.6 -2.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04500 -2.5 -15.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05920 -2.5 -0.5 50S ribosomal protein L37e compare
MMP_RS01800 -2.5 -6.0 TIGR00303 family protein compare
MMP_RS01960 -2.5 -1.4 hypothetical protein compare
MMP_RS07730 -2.5 -2.9 pyruvate synthase subunit beta compare
MMP_RS04775 -2.5 -5.1 adenosylhomocysteinase compare
MMP_RS08745 -2.5 -9.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05250 -2.5 -2.7 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07390 -2.5 -3.6 cell division protein FtsZ compare
MMP_RS00515 -2.5 -1.3 DUF655 domain-containing protein compare
MMP_RS05425 -2.5 -6.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07755 -2.4 -1.8 DUF555 domain-containing protein compare
MMP_RS06370 -2.4 -6.0 biotin synthase BioB compare
MMP_RS06475 -2.4 -6.0 FAD-dependent oxidoreductase compare
MMP_RS09020 -2.3 -2.6 hypothetical protein compare
MMP_RS07540 -2.3 -5.4 CBS domain-containing protein compare
MMP_RS04890 -2.3 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02800 -2.3 -6.3 nucleotidyltransferase domain-containing protein compare
MMP_RS02875 -2.3 -9.0 chorismate pyruvate-lyase family protein compare
MMP_RS01500 -2.3 -2.9 CBS domain-containing protein compare
MMP_RS06020 -2.3 -5.2 archaeoflavoprotein AfpA compare
MMP_RS07735 -2.2 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS02245 -2.2 -4.3 hypothetical protein compare
MMP_RS05555 -2.2 -2.2 DUF4040 domain-containing protein compare
MMP_RS04780 -2.2 -3.3 ribonuclease P compare
MMP_RS03580 -2.2 -3.8 signal recognition particle-docking protein FtsY compare
MMP_RS01005 -2.2 -1.7 riboflavin synthase compare
MMP_RS05815 -2.1 -2.3 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06840 -2.1 -1.3 DNA-directed RNA polymerase subunit N compare
MMP_RS07845 -2.1 -2.6 LL-diaminopimelate aminotransferase compare
MMP_RS01380 -2.0 -5.6 PHP domain-containing protein compare
MMP_RS08100 -2.0 -9.2 8-amino-7-oxononanoate synthase compare
MMP_RS07645 -2.0 -7.6 aldehyde dehydrogenase family protein compare
MMP_RS03700 -2.0 -7.7 sodium:proton antiporter compare
MMP_RS02900 -1.9 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01840 -1.9 -9.8 TIGR00289 family protein compare
MMP_RS07420 -1.9 -4.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00985 -1.9 -6.0 CDC48 family AAA ATPase compare
MMP_RS00895 -1.9 -4.4 hypothetical protein compare
MMP_RS06975 -1.9 -2.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08460 -1.9 -2.5 proteasome-activating nucleotidase compare
MMP_RS06885 -1.9 -3.7 50S ribosome-binding GTPase compare
MMP_RS01885 -1.9 -5.6 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS04585 -1.9 -9.3 AIR synthase related protein compare
MMP_RS07200 -1.9 -6.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS04720 -1.9 -2.2 DedA family protein compare
MMP_RS06315 -1.9 -1.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01700 -1.9 -1.0 dihydroxy-acid dehydratase compare
MMP_RS03600 -1.9 -2.9 triose-phosphate isomerase compare
MMP_RS01875 -1.8 -9.2 N-acetyltransferase compare
MMP_RS00115 -1.8 -11.1 radical SAM protein compare
MMP_RS08105 -1.8 -8.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS00810 -1.8 -8.6 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS05845 -1.8 -2.3 tRNA-intron lyase compare
MMP_RS05925 -1.8 -4.6 small nuclear ribonucleoprotein compare
MMP_RS00915 -1.8 -7.1 DUF116 domain-containing protein compare
MMP_RS00305 -1.8 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS01880 -1.8 -3.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08820 -1.8 -7.0 hypothetical protein compare
MMP_RS01975 -1.8 -13.3 hypothetical protein compare
MMP_RS01545 -1.7 -1.4 CBS domain-containing protein compare
MMP_RS01325 -1.7 -2.6 dihydroneopterin aldolase family protein compare
MMP_RS05540 -1.7 -2.4 hypothetical protein compare
MMP_RS08350 -1.7 -1.1 hypothetical protein compare
MMP_RS06105 -1.7 -9.4 hydrogenase maturation peptidase HycI compare
MMP_RS01365 -1.7 -3.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06340 -1.7 -6.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06900 -1.7 -3.9 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06980 -1.7 -6.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07605 -1.7 -3.2 diadenylate cyclase compare
MMP_RS04605 -1.7 -5.8 cobalt ECF transporter T component CbiQ compare
MMP_RS02345 -1.7 -2.6 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07090 -1.7 -8.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS05345 -1.7 -7.1 hypothetical protein compare
MMP_RS00060 -1.6 -2.3 3-dehydroquinate synthase II compare
MMP_RS06485 -1.6 -1.3 zinc ribbon domain-containing protein compare
MMP_RS03145 -1.6 -5.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS03095 -1.6 -6.4 diphthine synthase compare
MMP_RS03485 -1.6 -4.0 TIGR00267 family protein compare
MMP_RS07435 -1.6 -2.4 GMP synthase subunit A compare
MMP_RS04870 -1.6 -4.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS06230 -1.6 -2.7 helix-turn-helix domain-containing protein compare
MMP_RS05245 -1.6 -8.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07705 -1.6 -7.8 transcriptional regulator compare
MMP_RS06940 -1.6 -3.3 polyprenyl diphosphate synthase compare
MMP_RS06925 -1.6 -2.8 ribonuclease VapC4 compare
MMP_RS04955 -1.6 -6.3 DNA topoisomerase I compare
MMP_RS05640 -1.6 -6.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06630 -1.6 -1.0 UPF0058 family protein compare
MMP_RS03140 -1.5 -9.8 hypothetical protein compare
MMP_RS01665 -1.5 -3.4 DUF2111 domain-containing protein compare
MMP_RS03420 -1.5 -2.6 acetolactate synthase small subunit compare
MMP_RS03435 -1.5 -1.9 ketol-acid reductoisomerase compare
MMP_RS07355 -1.5 -1.1 transcription factor S compare
MMP_RS07075 -1.5 -4.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS08330 -1.5 -5.2 NADH-quinone oxidoreductase subunit H compare
MMP_RS07575 -1.5 -2.4 RNA ligase partner protein compare
MMP_RS07955 -1.5 -5.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07195 -1.4 -6.0 M20 family metallo-hydrolase compare
MMP_RS05930 -1.4 -2.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS00750 -1.4 -2.0 fumarate hydratase compare
MMP_RS05580 -1.4 -10.8 glycosyltransferase compare
MMP_RS05280 -1.4 -5.9 COG1361 S-layer family protein compare
MMP_RS01045 -1.3 -7.4 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS06215 -1.3 -3.3 30S ribosomal protein S6e compare
MMP_RS03250 -1.3 -3.0 MJ1244 family protein compare
MMP_RS07330 -1.3 -10.4 membrane protein compare
MMP_RS05635 -1.3 -8.1 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS04875 -1.3 -4.7 energy-converting hydrogenase B subunit P compare
MMP_RS03205 -1.3 -1.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06130 -1.3 -3.6 peptidylprolyl isomerase compare
MMP_RS08340 -1.2 -4.8 4Fe-4S binding protein compare
MMP_RS05525 -1.2 -5.7 calcium/sodium antiporter compare
MMP_RS03155 -1.2 -6.3 precorrin-6A reductase compare
MMP_RS02340 -1.2 -1.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01030 -1.2 -3.5 MTAP family purine nucleoside phosphorylase compare
MMP_RS00320 -1.2 -2.0 class I SAM-dependent methyltransferase compare
MMP_RS01925 -1.2 -3.5 DUF1616 domain-containing protein compare
MMP_RS07580 -1.2 -1.8 DUF356 domain-containing protein compare
MMP_RS02135 -1.2 -1.7 DUF5612 domain-containing protein compare
MMP_RS05430 -1.2 -3.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS06035 -1.1 -7.4 glycosyltransferase family 2 protein compare
MMP_RS06865 -1.1 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS05285 -1.1 -6.0 MMPL family transporter compare
MMP_RS03110 -1.1 -4.3 glycosyltransferase family 2 protein compare
MMP_RS07525 -1.1 -4.1 4Fe-4S binding protein compare
MMP_RS08645 -1.1 -5.2 UPF0179 family protein compare
MMP_RS07820 -1.1 -3.5 UPF0104 family protein compare
MMP_RS08320 -1.1 -3.8 molybdopterin molybdotransferase MoeA compare
MMP_RS02885 -1.1 -7.4 molybdopterin biosynthesis protein compare
MMP_RS02930 -1.1 -3.2 class I SAM-dependent methyltransferase compare
MMP_RS05950 -1.1 -6.0 nickel-dependent hydrogenase large subunit compare
MMP_RS04615 -1.1 -2.4 PDGLE domain-containing protein compare
MMP_RS00050 -1.1 -5.3 AarF/UbiB family protein compare
MMP_RS00900 -1.1 -1.7 50S ribosomal protein L39e compare
MMP_RS06670 -1.1 -2.1 glucose-6-phosphate isomerase compare
MMP_RS08360 -1.0 -3.5 hypothetical protein compare
MMP_RS04695 -1.0 -5.5 selenide water dikinase SelD compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source casamino acids across organisms