Experiment set7IT014 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 2g/L casamino acids 10mM Ammonium chloride

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS08845 +1.4 4.3 archaellum operon transcriptional activator EarA family protein compare
MMP_RS03300 +1.3 1.4 TOBE domain-containing protein compare
MMP_RS08850 +1.3 8.8 hypothetical protein compare
MMP_RS06300 +1.3 3.9 ABC transporter substrate-binding protein compare
MMP_RS08725 +1.1 0.9 Ni/Fe hydrogenase subunit alpha compare
MMP_RS01650 +1.1 1.2 sulfurtransferase TusA family protein compare
MMP_RS02310 +1.1 2.1 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08580 +1.0 1.8 flagellin compare
MMP_RS03340 +1.0 1.0 ABC transporter ATP-binding protein compare
MMP_RS08670 +1.0 4.2 metallophosphoesterase compare
MMP_RS05975 +1.0 1.8 hypothetical protein compare
MMP_RS00655 +0.9 2.3 hypothetical protein compare
MMP_RS09025 +0.9 1.0 hypothetical protein compare
MMP_RS04945 +0.8 2.8 hypothetical protein compare
MMP_RS02170 +0.8 3.2 CBS domain-containing protein compare
MMP_RS00395 +0.8 1.4 MGMT family protein compare
MMP_RS00295 +0.8 1.5 gamma carbonic anhydrase family protein compare
MMP_RS01945 +0.8 2.1 DUF4350 domain-containing protein compare
MMP_RS06540 +0.7 1.2 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS02290 +0.7 3.7 MBL fold metallo-hydrolase compare
MMP_RS01935 +0.7 3.1 DUF58 domain-containing protein compare
MMP_RS00185 +0.7 5.0 potassium channel protein compare
MMP_RS06910 +0.7 4.2 RlmF-related methyltransferase compare
MMP_RS08500 +0.6 2.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS08160 +0.6 1.7 EamA family transporter compare
MMP_RS06515 +0.6 1.7 UPF0489 family protein compare
MMP_RS08415 +0.6 2.0 radical SAM protein compare
MMP_RS01630 +0.6 3.4 N-glycosylase/DNA lyase compare
MMP_RS07900 +0.6 1.5 YeeE/YedE family protein compare
MMP_RS06575 +0.6 2.4 fluoride efflux transporter CrcB compare
MMP_RS07835 +0.6 2.7 TldD/PmbA family protein compare
MMP_RS00155 +0.6 2.7 heavy metal-binding domain-containing protein compare
MMP_RS02815 +0.6 1.8 hypothetical protein compare
MMP_RS08455 +0.6 2.3 multiprotein bridging factor aMBF1 compare
MMP_RS08430 +0.6 2.1 HAD family hydrolase compare
MMP_RS05695 +0.6 3.9 phospholipase D-like domain-containing protein compare
MMP_RS07880 +0.5 2.7 AAA family ATPase compare
MMP_RS07815 +0.5 0.8 DUF2120 domain-containing protein compare
MMP_RS06500 +0.5 2.6 ATP-binding protein compare
MMP_RS01950 +0.5 2.2 hypothetical protein compare
MMP_RS08775 +0.5 2.0 methanogenesis marker 9 domain-containing protein compare
MMP_RS04740 +0.5 2.3 DUF473 domain-containing protein compare
MMP_RS00450 +0.5 0.8 4Fe-4S binding protein compare
MMP_RS08265 +0.5 2.0 rubrerythrin compare
MMP_RS01930 +0.5 2.5 hypothetical protein compare
MMP_RS06310 +0.5 0.9 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS00980 +0.5 2.3 hypothetical protein compare
MMP_RS01570 +0.5 0.9 hypothetical protein compare
MMP_RS03450 +0.5 1.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS08280 +0.5 1.4 proteasome assembly chaperone family protein compare
MMP_RS01805 +0.5 1.7 NUDIX hydrolase compare
MMP_RS02475 +0.5 0.8 hypothetical protein compare
MMP_RS01660 +0.5 1.7 hypothetical protein compare
MMP_RS07970 +0.5 1.6 hypothetical protein compare
MMP_RS05675 +0.5 0.9 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS08405 +0.5 2.4 MFS transporter compare
MMP_RS08700 +0.5 2.5 hypothetical protein compare
MMP_RS07095 +0.4 1.1 PspC domain-containing protein compare
MMP_RS05955 +0.4 1.3 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS01470 +0.4 1.4 ATP-binding cassette domain-containing protein compare
MMP_RS05795 +0.4 2.1 redox-regulated ATPase YchF compare
MMP_RS08285 +0.4 1.8 serine/threonine protein kinase compare
MMP_RS01420 +0.4 0.8 hypothetical protein compare
MMP_RS02705 +0.4 2.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02935 +0.4 1.7 A24 family peptidase compare
MMP_RS05715 +0.4 2.2 hypothetical protein compare
MMP_RS05970 +0.4 2.0 class II SORL domain-containing protein compare
MMP_RS08250 +0.4 2.6 pyruvate kinase compare
MMP_RS08990 +0.4 2.0 hypothetical protein compare
MMP_RS01150 +0.4 1.8 aldo/keto reductase compare
MMP_RS06590 +0.4 1.4 GNAT family N-acetyltransferase compare
MMP_RS03065 +0.4 1.4 AzlC family ABC transporter permease compare
MMP_RS06965 +0.4 2.2 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS01675 +0.4 0.8 hypothetical protein compare
MMP_RS06660 +0.4 2.3 glycosyltransferase family 4 protein compare
MMP_RS01110 +0.4 1.2 FmdE family protein compare
MMP_RS07860 +0.4 0.4 hypothetical protein compare
MMP_RS08640 +0.4 2.5 TIM barrel protein compare
MMP_RS06990 +0.4 1.6 CatB-related O-acetyltransferase compare
MMP_RS09065 +0.4 3.0 hypothetical protein compare
MMP_RS00660 +0.4 2.7 alkaline phosphatase family protein compare
MMP_RS08620 +0.4 1.3 flagellar accessory protein FlaH compare
MMP_RS07985 +0.4 2.9 nitroreductase family protein compare
MMP_RS06305 +0.4 1.9 transporter substrate-binding domain-containing protein compare
MMP_RS00290 +0.4 2.1 hypothetical protein compare
MMP_RS07765 +0.4 2.4 sodium:alanine symporter family protein compare
MMP_RS06715 +0.4 3.0 cache domain-containing protein compare
MMP_RS01115 +0.4 2.0 molybdopterin molybdotransferase MoeA compare
MMP_RS08235 +0.4 1.5 hypothetical protein compare
MMP_RS07850 +0.4 0.8 prephenate dehydratase compare
MMP_RS00145 +0.4 2.5 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS08070 +0.4 2.0 DUF2096 domain-containing protein compare
MMP_RS07805 +0.4 1.9 ABC transporter permease compare
MMP_RS07155 +0.4 2.0 MFS transporter compare
MMP_RS01100 +0.4 0.5 ABC transporter ATP-binding protein compare
MMP_RS00235 +0.4 2.1 HDIG domain-containing protein compare
MMP_RS02265 +0.4 0.8 nitroreductase family protein compare
MMP_RS00795 +0.4 2.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08275 +0.4 2.0 hypothetical protein compare
MMP_RS06720 +0.4 2.2 response regulator transcription factor compare
MMP_RS03965 +0.4 0.9 hypothetical protein compare
MMP_RS07775 +0.4 2.0 alanine dehydrogenase compare
MMP_RS08930 +0.4 0.7 hypothetical protein compare
MMP_RS00455 +0.4 2.0 orotate phosphoribosyltransferase-like protein compare
MMP_RS08260 +0.3 2.0 DUF99 family protein compare
MMP_RS00960 +0.3 1.4 iron export ABC transporter permease subunit FetB compare
MMP_RS06050 +0.3 1.9 ZIP family metal transporter compare
MMP_RS08325 +0.3 2.2 hypothetical protein compare
MMP_RS08485 +0.3 1.9 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS08555 +0.3 1.0 hypothetical protein compare
MMP_RS05780 +0.3 2.2 multidrug resistance efflux transporter family protein compare
MMP_RS01910 +0.3 1.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS08075 +0.3 1.4 DUF749 domain-containing protein compare
MMP_RS02890 +0.3 1.9 TIGR00296 family protein compare
MMP_RS07550 +0.3 2.3 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS05660 +0.3 2.1 phosphate ABC transporter substrate-binding protein compare
MMP_RS06710 +0.3 1.2 selenium-binding protein compare
MMP_RS05720 +0.3 0.9 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS01320 +0.3 1.3 hypothetical protein compare
MMP_RS08410 +0.3 1.1 DUF169 domain-containing protein compare
MMP_RS08980 +0.3 1.1 hypothetical protein compare
MMP_RS07335 +0.3 1.2 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS06655 +0.3 2.3 glycoside hydrolase family 15 protein compare
MMP_RS09060 +0.3 2.1 hypothetical protein compare
MMP_RS04145 +0.3 0.6 hypothetical protein compare
MMP_RS03875 +0.3 0.8 hypothetical protein compare
MMP_RS02695 +0.3 1.4 formylmethanofuran dehydrogenase subunit A compare
MMP_RS02375 +0.3 1.7 hypothetical protein compare
MMP_RS01580 +0.3 1.6 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS06675 +0.3 1.6 ADP-specific phosphofructokinase compare
MMP_RS06015 +0.3 1.6 flavodoxin family protein compare
MMP_RS00705 +0.3 0.7 hypothetical protein compare
MMP_RS07840 +0.3 1.0 ribonuclease III compare
MMP_RS01130 +0.3 1.9 flavoprotein compare
MMP_RS02415 +0.3 0.7 site-specific integrase compare
MMP_RS01105 +0.3 1.4 hypothetical protein compare
MMP_RS00385 +0.3 1.5 P-II family nitrogen regulator compare
MMP_RS01460 +0.3 0.9 hypothetical protein compare
MMP_RS08390 +0.3 1.5 DUF5400 domain-containing protein compare
MMP_RS07905 +0.3 1.1 DUF3343 domain-containing protein compare
MMP_RS02390 +0.3 1.2 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS08130 +0.3 1.7 IGHMBP2 family helicase compare
MMP_RS07185 +0.3 1.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01785 +0.3 1.3 hypothetical protein compare
MMP_RS00665 +0.3 1.0 hypothetical protein compare
MMP_RS04405 +0.3 1.7 hypothetical protein compare
MMP_RS00950 +0.3 1.1 site-2 protease family protein compare
MMP_RS03870 +0.3 0.9 purine NTPase compare
MMP_RS07150 +0.3 1.3 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS03535 +0.3 0.5 helix-turn-helix transcriptional regulator compare
MMP_RS02315 +0.3 1.2 RimK family alpha-L-glutamate ligase compare
MMP_RS06860 +0.3 0.5 4Fe-4S binding protein compare
MMP_RS08315 +0.3 0.9 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS01210 +0.3 1.3 sodium:solute symporter compare
MMP_RS08610 +0.3 1.9 flagellar protein F compare
MMP_RS02320 +0.3 1.4 glutamate-cysteine ligase family protein compare
MMP_RS06065 +0.3 2.1 iron ABC transporter substrate-binding protein compare
MMP_RS01455 +0.3 0.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS02770 +0.3 1.0 hypothetical protein compare
MMP_RS01920 +0.3 1.3 glycosyltransferase family 2 protein compare
MMP_RS06440 +0.3 1.1 CBS domain-containing protein compare
MMP_RS07650 +0.3 1.9 TldD/PmbA family protein compare
MMP_RS08400 +0.2 1.0 MJ0307 family thioredoxin compare
MMP_RS08665 +0.2 2.0 hypothetical protein compare
MMP_RS08475 +0.2 1.3 ABC transporter permease compare
MMP_RS02895 +0.2 1.4 DHH family phosphoesterase compare
MMP_RS05665 +0.2 0.8 phosphate ABC transporter permease subunit PstC compare
MMP_RS01060 +0.2 1.6 calcium/sodium antiporter compare
MMP_RS05270 +0.2 1.8 PEGA domain-containing protein compare
MMP_RS01620 +0.2 1.0 hypothetical protein compare
MMP_RS00085 +0.2 1.6 DNA cytosine methyltransferase compare
MMP_RS06190 +0.2 1.0 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS06735 +0.2 0.9 class I SAM-dependent rRNA methyltransferase compare
MMP_RS02915 +0.2 1.1 amino acid ABC transporter permease compare
MMP_RS03730 +0.2 1.7 ABC transporter substrate-binding protein compare
MMP_RS00800 +0.2 1.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02295 +0.2 1.2 TatD family hydrolase compare
MMP_RS07855 +0.2 1.3 class I SAM-dependent methyltransferase compare
MMP_RS06520 +0.2 1.1 DUF1786 domain-containing protein compare
MMP_RS00390 +0.2 1.5 ammonium transporter compare
MMP_RS08225 +0.2 1.0 RimK family alpha-L-glutamate ligase compare
MMP_RS08470 +0.2 1.0 ATP-binding cassette domain-containing protein compare
MMP_RS03480 +0.2 1.5 SulP family inorganic anion transporter compare
MMP_RS06585 +0.2 0.4 DMT family protein compare
MMP_RS00855 +0.2 1.1 DUF367 family protein compare
MMP_RS06010 +0.2 1.5 heavy metal translocating P-type ATPase compare
MMP_RS00565 +0.2 1.1 CBS domain-containing protein compare
MMP_RS01070 +0.2 1.5 hypothetical protein compare
MMP_RS07915 +0.2 1.0 DUF4870 domain-containing protein compare
MMP_RS08395 +0.2 0.8 DsrE family protein compare
MMP_RS02510 +0.2 1.3 site-specific integrase compare
MMP_RS00990 +0.2 0.7 hypothetical protein compare
MMP_RS01125 +0.2 0.9 thioredoxin family protein compare
MMP_RS07715 +0.2 1.2 YfcE family phosphodiesterase compare
MMP_RS08085 +0.2 1.2 hypothetical protein compare
MMP_RS08490 +0.2 1.8 hypothetical protein compare
MMP_RS02590 +0.2 0.8 low molecular weight phosphatase family protein compare
MMP_RS01685 +0.2 0.6 indolepyruvate oxidoreductase subunit beta compare
MMP_RS06560 +0.2 1.3 hypothetical protein compare
MMP_RS06465 +0.2 1.4 NERD domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source casamino acids across organisms