Experiment set7IT013 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Tetracycline hydrochloride 0.0002 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2823 -4.4 -6.0 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2967 -4.0 -3.9 Cold shock protein CspA compare
Pf6N2E2_2825 -3.9 -4.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2824 -3.6 -13.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3607 -3.2 -10.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2218 -3.1 -6.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5430 -3.0 -11.5 Transglycosylase, Slt family compare
Pf6N2E2_4187 -2.7 -6.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5527 -2.5 -2.9 Cold shock protein CspC compare
Pf6N2E2_3826 -2.4 -7.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4372 -2.3 -6.1 FIG00460773: hypothetical protein compare
Pf6N2E2_463 -2.1 -6.5 Transcriptional regulatory protein RstA compare
Pf6N2E2_5340 -2.1 -5.2 Stringent starvation protein A compare
Pf6N2E2_464 -2.0 -3.7 Sensory histidine kinase QseC compare
Pf6N2E2_2605 -2.0 -6.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3261 -1.5 -3.4 hypothetical protein compare
Pf6N2E2_288 -1.5 -2.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4416 -1.5 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_2285 -1.5 -2.9 FIG00954079: hypothetical protein compare
Pf6N2E2_5534 -1.5 -5.8 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3603 -1.3 -5.6 FIG003573: hypothetical protein compare
Pf6N2E2_4352 -1.3 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5261 -1.3 -1.5 FIG00956983: hypothetical protein compare
Pf6N2E2_4369 -1.2 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4918 -1.2 -2.7 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4612 -1.2 -4.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2277 -1.2 -2.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2313 -1.2 -3.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_1652 -1.2 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2753 -1.1 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_2217 -1.1 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2440 -1.1 -1.5 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_4072 -1.1 -3.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5086 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_4545 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_4155 -1.0 -6.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5727 -1.0 -4.5 FIG00955360: hypothetical protein compare
Pf6N2E2_2074 -1.0 -2.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4362 -1.0 -1.8 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2940 -0.9 -3.7 OmpA family protein compare
Pf6N2E2_617 -0.9 -3.2 Probable glutathione S-transferase compare
Pf6N2E2_1441 -0.9 -1.5 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_3762 -0.9 -5.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_3753 -0.9 -7.0 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_1027 -0.9 -3.0 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_1994 -0.9 -2.8 putative lipoprotein compare
Pf6N2E2_4999 -0.9 -5.1 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3039 -0.9 -4.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5846 -0.9 -6.8 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2536 -0.9 -1.8 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_6065 -0.9 -1.6 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_4417 -0.9 -3.5 Protein of unknown function DUF484 compare
Pf6N2E2_423 -0.9 -0.9 Putative phosphatase YfbT compare
Pf6N2E2_2606 -0.8 -4.1 hypothetical protein compare
Pf6N2E2_778 -0.8 -3.1 Probable lipoprotein signal peptide compare
Pf6N2E2_3568 -0.8 -2.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_3782 -0.8 -2.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3849 -0.8 -1.9 FIG00954739: hypothetical protein compare
Pf6N2E2_2640 -0.8 -1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_6093 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_2129 -0.8 -2.5 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3493 -0.8 -4.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4075 -0.8 -3.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2312 -0.8 -1.0 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_4743 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_638 -0.8 -2.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_728 -0.8 -2.2 Nitrate/nitrite transporter compare
Pf6N2E2_3825 -0.8 -3.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3260 -0.8 -3.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4145 -0.8 -2.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_624 -0.8 -3.4 hypothetical protein PA3071 compare
Pf6N2E2_1694 -0.8 -1.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2282 -0.8 -2.5 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2487 -0.8 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_5156 -0.8 -1.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1056 -0.8 -3.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_621 -0.8 -3.8 TPR domain protein in aerotolerance operon compare
Pf6N2E2_6047 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_291 -0.8 -3.5 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2274 -0.8 -3.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3258 -0.8 -3.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5183 -0.7 -5.7 Paraquat-inducible protein B compare
Pf6N2E2_3515 -0.7 -3.8 Probable transmembrane protein compare
Pf6N2E2_5181 -0.7 -5.4 Paraquat-inducible protein A compare
Pf6N2E2_4803 -0.7 -0.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2320 -0.7 -1.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3248 -0.7 -3.2 Probable transmembrane protein compare
Pf6N2E2_1089 -0.7 -1.1 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_620 -0.7 -4.4 BatD compare
Pf6N2E2_1705 -0.7 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_81 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_5252 -0.7 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_622 -0.7 -2.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_1095 -0.7 -1.8 Opine oxidase subunit C compare
Pf6N2E2_4147 -0.7 -4.4 Fused spore maturation proteins A and B compare
Pf6N2E2_5677 -0.7 -1.1 Carbon storage regulator compare
Pf6N2E2_5545 -0.7 -2.2 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_1625 -0.7 -2.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4174 -0.7 -5.7 Methionine ABC transporter substrate-binding protein compare
Pf6N2E2_1812 -0.7 -2.2 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_5158 -0.7 -2.2 FIG00954153: hypothetical protein compare
Pf6N2E2_2681 -0.7 -2.0 3-phosphoglycerate kinase compare
Pf6N2E2_3270 -0.7 -2.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_5337 -0.7 -2.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3219 -0.7 -2.5 hypothetical protein compare
Pf6N2E2_3666 -0.7 -3.0 InaA protein compare
Pf6N2E2_962 -0.7 -1.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_4843 -0.7 -3.1 FIG00956941: hypothetical protein compare
Pf6N2E2_5494 -0.7 -3.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5182 -0.7 -4.0 Paraquat-inducible protein A compare
Pf6N2E2_4618 -0.7 -2.4 Chemotaxis signal transduction protein compare
Pf6N2E2_2473 -0.7 -0.9 Major outer membrane lipoprotein I compare
Pf6N2E2_2675 -0.7 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5319 -0.7 -4.2 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2201 -0.7 -2.5 Transmembrane regulator protein PrtR compare
Pf6N2E2_3300 -0.7 -2.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1153 -0.7 -2.1 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_90 -0.7 -3.0 Lipoprotein, putative compare
Pf6N2E2_4206 -0.7 -1.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5758 -0.7 -0.9 FIG00957314: hypothetical protein compare
Pf6N2E2_2470 -0.7 -3.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_6022 -0.7 -1.3 StbE replicon stabilization toxin compare
Pf6N2E2_4632 -0.7 -5.5 Amine oxidase [flavin-containing] (EC 1.4.3.4) compare
Pf6N2E2_2479 -0.7 -1.6 Transcription elongation factor GreB compare
Pf6N2E2_5190 -0.6 -4.4 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5584 -0.6 -1.5 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_3546 -0.6 -2.4 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_5766 -0.6 -1.4 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_2106 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_1126 -0.6 -2.6 Two-component system regulatory protein compare
Pf6N2E2_75 -0.6 -2.1 Colicin V production protein compare
Pf6N2E2_3373 -0.6 -2.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2371 -0.6 -1.6 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2208 -0.6 -1.8 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_5331 -0.6 -3.1 ATPase, AFG1 family compare
Pf6N2E2_5845 -0.6 -3.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2318 -0.6 -3.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5640 -0.6 -1.4 FIG00955597: hypothetical protein compare
Pf6N2E2_2103 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_5406 -0.6 -1.7 FIG00958224: hypothetical protein compare
Pf6N2E2_5242 -0.6 -1.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4367 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_5810 -0.6 -1.8 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_3386 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_5321 -0.6 -3.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_417 -0.6 -1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2962 -0.6 -2.2 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2196 -0.6 -2.6 FIG00953347: hypothetical protein compare
Pf6N2E2_5476 -0.6 -1.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1435 -0.6 -1.2 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3786 -0.6 -1.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_5841 -0.6 -1.0 GlcG protein compare
Pf6N2E2_295 -0.6 -1.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_5320 -0.6 -3.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3461 -0.6 -0.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4050 -0.6 -2.1 FIG00953718: hypothetical protein compare
Pf6N2E2_5468 -0.6 -1.8 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_1732 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_3856 -0.6 -3.3 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_58 -0.6 -1.1 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_1806 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_2181 -0.6 -0.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4276 -0.6 -2.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4541 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_1626 -0.5 -3.1 Putative ATP-binding component of a transport system compare
Pf6N2E2_3810 -0.5 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2986 -0.5 -1.8 Transcriptional regulator, LuxR family compare
Pf6N2E2_4647 -0.5 -4.4 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_862 -0.5 -2.3 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_5241 -0.5 -1.1 Aminopeptidase N compare
Pf6N2E2_2706 -0.5 -1.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_529 -0.5 -2.8 FIG00954439: hypothetical protein compare
Pf6N2E2_5898 -0.5 -1.9 Integral membrane protein compare
Pf6N2E2_302 -0.5 -2.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_292 -0.5 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_6064 -0.5 -2.7 2-methylaconitate isomerase compare
Pf6N2E2_5076 -0.5 -3.1 DNA repair protein RadA compare
Pf6N2E2_3454 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_1157 -0.5 -1.7 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_5140 -0.5 -2.2 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_5663 -0.5 -2.1 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_1233 -0.5 -2.5 ABC-type protease exporter, ATP-binding component PrtD/AprD compare
Pf6N2E2_2467 -0.5 -1.9 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_567 -0.5 -2.3 Universal stress protein family 7 compare
Pf6N2E2_5318 -0.5 -4.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4611 -0.5 -2.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_763 -0.5 -2.5 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_613 -0.5 -1.0 lipoprotein, putative compare
Pf6N2E2_2340 -0.5 -1.5 Transcriptional regulator, GntR family compare
Pf6N2E2_2420 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_3574 -0.5 -3.9 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf6N2E2_3957 -0.5 -2.6 Putative membrane-bound ClpP-class protease associated with aq_911 compare
Pf6N2E2_2052 -0.5 -2.9 ABC transporter for D-Glucosamine Hydrochloride, permease component 2 (from data) compare
Pf6N2E2_3612 -0.5 -1.5 HflK protein compare
Pf6N2E2_4143 -0.5 -2.8 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf6N2E2_2870 -0.5 -1.8 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_217 -0.5 -1.6 Signal transduction histidine kinase compare
Pf6N2E2_1862 -0.5 -2.0 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf6N2E2_3257 -0.5 -1.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1706 -0.5 -1.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Tetracycline hydrochloride in Pseudomonas fluorescens FW300-N2E2

For stress Tetracycline hydrochloride across organisms