Experiment set7IT011 for Pseudomonas syringae pv. syringae B728a

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
Psyr_1984 -5.9 -4.1 3-isopropylmalate dehydratase, small subunit compare
Psyr_4894 -5.1 -6.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_1269 -4.7 -3.2 phosphoribosylformylglycinamidine synthase compare
Psyr_4581 -4.7 -3.9 anthranilate synthase, component II compare
Psyr_4940 -4.5 -3.1 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_1985 -4.3 -5.9 3-isopropylmalate dehydrogenase compare
Psyr_0821 -4.3 -6.5 PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase conserved
Psyr_4133 -4.2 -10.0 histidinol dehydrogenase compare
Psyr_0846 -4.2 -8.8 acetolactate synthase, large subunit compare
Psyr_0847 -4.1 -6.2 acetolactate synthase, small subunit compare
Psyr_4896 -4.1 -8.6 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_1983 -4.1 -7.6 3-isopropylmalate dehydratase, large subunit compare
Psyr_1542 -4.1 -9.3 quinolinate synthetase compare
Psyr_0827 -4.0 -3.9 pantothenate synthetase compare
Psyr_1544 -4.0 -2.8 SirA-like protein compare
Psyr_4580 -4.0 -4.7 anthranilate phosphoribosyltransferase compare
Psyr_1121 -4.0 -2.7 6-phosphogluconolactonase compare
Psyr_1120 -3.9 -7.3 glucose-6-phosphate 1-dehydrogenase compare
Psyr_4132 -3.9 -9.2 histidinol phosphate aminotransferase apoenzyme compare
Psyr_4134 -3.8 -9.9 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4270 -3.8 -7.9 serine hydroxymethyltransferase compare
Psyr_1108 -3.8 -11.4 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_0951 -3.7 -2.5 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1663 -3.7 -4.3 phosphoribosylanthranilate isomerase compare
Psyr_4609 -3.7 -12.6 anthranilate synthase, component I compare
Psyr_0033 -3.6 -4.3 tryptophan synthase, alpha chain compare
Psyr_1914 -3.6 -9.1 transaldolase compare
Psyr_0412 -3.6 -9.8 glutamate synthase (NADPH) small subunit compare
Psyr_2462 -3.5 -5.7 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0469 -3.5 -9.5 dihydroxyacid dehydratase compare
Psyr_0473 -3.5 -6.5 Methionine biosynthesis MetW compare
Psyr_0411 -3.5 -16.3 glutamate synthase (NADPH) large subunit compare
Psyr_4897 -3.4 -4.6 imidazoleglycerol-phosphate dehydratase compare
Psyr_4893 -3.4 -2.1 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1669 -3.4 -9.2 O-succinylhomoserine sulfhydrylase compare
Psyr_4740 -3.3 -6.6 thiazole-phosphate synthase compare
Psyr_1109 -3.3 -9.3 6-phosphogluconate dehydratase compare
Psyr_0034 -3.3 -3.9 tryptophan synthase, beta chain compare
Psyr_0848 -3.3 -9.5 ketol-acid reductoisomerase compare
Psyr_0474 -3.3 -9.7 homoserine O-acetyltransferase compare
Psyr_4126 -3.3 -12.6 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_0917 -3.2 -10.0 ABC-2 compare
Psyr_4852 -3.2 -8.7 D-3-phosphoglycerate dehydrogenase compare
Psyr_0704 -3.2 -10.0 glutamate 5-kinase compare
Psyr_0831 -3.2 -3.6 Two-component response regulator CbrB compare
Psyr_1257 -3.1 -11.7 2-isopropylmalate synthase compare
Psyr_0815 -3.1 -6.4 nicotinate-nucleotide pyrophosphorylase (carboxylating) compare
Psyr_0822 -3.1 -1.9 1-phosphofructokinase compare
Psyr_2617 -3.1 -3.2 Secretion protein HlyD compare
Psyr_3955 -3.1 -6.1 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1668 -3.1 -6.3 amidophosphoribosyltransferase compare
Psyr_4128 -3.0 -7.9 sulfate adenylyltransferase subunit 2 compare
Psyr_2077 -3.0 -6.6 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_4417 -2.9 -2.9 Ferredoxin--nitrite reductase compare
Psyr_0918 -2.9 -12.8 ABC transporter compare
Psyr_3690 -2.9 -6.7 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4341 -2.9 -7.2 thiamine-phosphate diphosphorylase compare
Psyr_0208 -2.9 -8.5 endoribonuclease L-PSP compare
Psyr_4369 -2.9 -6.2 glutamate-5-semialdehyde dehydrogenase compare
Psyr_3281 -2.8 -3.7 Glycoside hydrolase, family 3, N-terminal compare
Psyr_4340 -2.8 -8.2 phosphomethylpyrimidine kinase, putative compare
Psyr_0544 -2.8 -11.8 hydroxymethylpyrimidine synthase compare
Psyr_3174 -2.8 -5.0 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_2436 -2.6 -10.3 Mannitol dehydrogenase conserved
Psyr_5062 -2.6 -6.8 transcriptional regulator, LysR family compare
Psyr_1148 -2.6 -7.4 branched chain amino acid aminotransferase apoenzyme compare
Psyr_5061 -2.6 -12.5 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase compare
Psyr_0826 -2.5 -5.7 glucose-6-phosphate isomerase compare
Psyr_2434 -2.5 -3.3 Carbohydrate kinase, PfkB compare
Psyr_4991 -2.5 -1.7 hypothetical protein compare
Psyr_0215 -2.5 -10.8 Exodeoxyribonuclease III xth compare
Psyr_4920 -2.5 -3.6 conserved hypothetical bacteriophage protein compare
Psyr_0557 -2.4 -6.5 phosphoserine phosphatase compare
Psyr_4622 -2.4 -5.7 Nucleotidyl transferase compare
Psyr_4687 -2.4 -4.2 biotin synthase compare
Psyr_4844 -2.4 -9.8 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_5060 -2.4 -12.8 Oxaloacetate decarboxylase, alpha subunit compare
Psyr_2073 -2.3 -4.3 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_4407 -2.3 -2.9 phosphoribosylamine--glycine ligase compare
Psyr_0823 -2.3 -8.2 PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family conserved
Psyr_1140 -2.3 -3.2 Disulfide bond formation protein DsbB compare
Psyr_0232 -2.3 -10.9 gamma-glutamylputrescine oxidase compare
Psyr_1864 -2.2 -4.5 spermidine synthase compare
Psyr_1408 -2.2 -3.9 Holliday junction endonuclease RuvC compare
Psyr_4139 -2.2 -6.7 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_1114 -2.2 -10.9 glucose ABC transporter membrane protein conserved
Psyr_4091 -2.2 -4.7 8-oxo-dGTPase compare
Psyr_0293 -2.2 -11.4 Polyphosphate kinase compare
Psyr_1251 -2.1 -4.9 quinoprotein compare
Psyr_2435 -2.1 -3.0 Xylulokinase compare
Psyr_4138 -2.1 -4.1 Toluene tolerance compare
Psyr_1115 -2.1 -8.6 glucose ABC transporter membrane protein conserved
Psyr_4178 -2.0 -6.4 tRNA pseudouridine synthase B compare
Psyr_2088 -2.0 -3.3 2-methylaconitate cis-trans isomerase compare
Psyr_3113 -2.0 -7.2 N-acylglucosamine 2-epimerase conserved
Psyr_0529 -1.9 -5.4 Glycosyl transferase, group 1 compare
Psyr_1247 -1.9 -2.4 conserved hypothetical protein compare
Psyr_4070 -1.9 -4.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3008 -1.9 -5.7 Undecaprenyl-diphosphatase compare
Psyr_4140 -1.9 -2.8 Protein of unknown function DUF140 compare
Psyr_1116 -1.9 -10.2 glucose ABC transporter ATP-binding protein conserved
Psyr_4575 -1.8 -9.1 adenosylmethionine decarboxylase proenzyme compare
Psyr_4686 -1.8 -4.4 8-amino-7-oxononanoate synthase compare
Psyr_1910 -1.8 -5.0 VacJ-like lipoprotein compare
Psyr_0383 -1.8 -1.9 Twin-arginine translocation protein TatB compare
Psyr_2461 -1.8 -3.1 Uncharacterized conserved protein UCP030820 compare
Psyr_1373 -1.7 -3.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0532 -1.7 -5.3 conserved hypothetical protein compare
Psyr_1113 -1.7 -7.9 glucose-binding protein conserved
Psyr_5043 -1.7 -5.4 Thioesterase superfamily compare
Psyr_2160 -1.6 -3.6 cold-shock DNA-binding protein family compare
Psyr_1094 -1.6 -3.1 cold-shock DNA-binding protein family compare
Psyr_4808 -1.6 -1.9 conserved hypothetical protein compare
Psyr_0386 -1.6 -2.6 phosphoribosyl-AMP cyclohydrolase compare
Psyr_4127 -1.6 -3.2 S23 ribosomal compare
Psyr_4362 -1.6 -3.5 Rare lipoprotein A compare
Psyr_0454 -1.6 -3.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0385 -1.5 -3.2 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0579 -1.5 -9.0 RNAse R compare
Psyr_3293 -1.5 -2.8 UspA compare
Psyr_4019 -1.5 -3.9 H-NS family protein MvaT compare
Psyr_1056 -1.5 -3.6 Poly(beta-D-mannuronate) lyase compare
Psyr_3315 -1.5 -1.5 conserved hypothetical protein compare
Psyr_4018 -1.5 -7.1 Formyltetrahydrofolate deformylase compare
Psyr_1941 -1.5 -2.4 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_3673 -1.5 -1.8 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_1447 -1.5 -2.0 conserved hypothetical protein compare
Psyr_3013 -1.4 -2.7 magnesium chelatase subunit ChlD compare
Psyr_2980 -1.4 -3.4 UDP-glucose pyrophosphorylase compare
Psyr_5044 -1.4 -7.2 Aldose 1-epimerase conserved
Psyr_4684 -1.4 -1.9 biotin synthesis protein BioC compare
Psyr_4898 -1.4 -7.3 aromatic amino acid aminotransferase apoenzyme compare
Psyr_1304 -1.4 -2.0 CheW-like protein compare
Psyr_1350 -1.4 -3.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4683 -1.4 -3.0 dethiobiotin synthase compare
Psyr_2557 -1.3 -3.1 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_2441 -1.3 -3.5 transcriptional regulator, AraC family compare
Psyr_3597 -1.3 -1.9 ABC transporter compare
Psyr_4408 -1.3 -5.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3677 -1.3 -2.6 Aminotransferase, class I and II compare
Psyr_0025 -1.3 -3.0 shikimate dehydrogenase compare
Psyr_2618 -1.3 -4.9 ABC transporter:Protein of unknown function DUF214 compare
Psyr_0576 -1.3 -1.6 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_3462 -1.3 -2.7 conserved hypothetical protein compare
Psyr_2973 -1.3 -2.0 Glyoxalase I compare
Psyr_4277 -1.3 -5.0 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_1748 -1.3 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0832 -1.3 -5.6 Two-component sensor kinase CbrA compare
Psyr_4141 -1.3 -3.9 ABC transporter compare
Psyr_1111 -1.3 -1.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3610 -1.2 -3.1 GAF compare
Psyr_0268 -1.2 -1.9 DSBA oxidoreductase compare
Psyr_4089 -1.2 -4.8 PAS compare
Psyr_0531 -1.2 -1.9 LmbE-like protein compare
Psyr_2264 -1.2 -1.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2613 -1.2 -3.8 Cyclic peptide transporter compare
Psyr_4113 -1.2 -5.7 LppC putative lipoprotein compare
Psyr_1749 -1.1 -4.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3240 -1.1 -2.4 CTP synthase compare
Psyr_2897 -1.1 -4.3 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3115 -1.1 -3.4 Glycerate kinase compare
Psyr_3662 -1.1 -2.7 NAD(P)H dehydrogenase (quinone) compare
Psyr_4203 -1.1 -1.3 SsrA-binding protein compare
Psyr_1410 -1.1 -2.9 Holliday junction DNA helicase RuvB compare
Psyr_4143 -1.1 -1.7 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_3755 -1.1 -1.6 conserved hypothetical protein compare
Psyr_4161 -1.1 -2.6 Rod shape-determining protein MreD compare
Psyr_3337 -1.1 -2.6 gluconate kinase, SKI family compare
Psyr_0811 -1.1 -5.1 Integral membrane protein TerC compare
Psyr_0835 -1.0 -3.5 transcriptional regulator, TraR/DksA family compare
Psyr_4750 -1.0 -2.0 cell division ATP-binding protein FtsE compare
Psyr_2970 -1.0 -3.6 TPR repeat protein:TPR repeat protein compare
Psyr_3701 -1.0 -1.7 thioredoxin, putative compare
Psyr_0970 -1.0 -3.5 Phosphoribosyltransferase compare
Psyr_4028 -1.0 -2.6 lipoprotein, putative compare
Psyr_3492 -1.0 -5.4 L-glutamine synthetase compare
Psyr_4278 -1.0 -1.8 regulatory protein, LuxR compare
Psyr_3135 -1.0 -1.7 transcriptional regulator, GntR family compare
Psyr_2747 -1.0 -2.0 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
Psyr_4627 -1.0 -2.0 dimethyladenosine transferase compare
Psyr_0914 -1.0 -6.5 Glycosyl transferase, group 1 compare
Psyr_0528 -1.0 -2.0 Carbamoyltransferase compare
Psyr_3425 -1.0 -2.1 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_1816 -1.0 -2.9 transcriptional regulator, GntR family compare
Psyr_4029 -1.0 -4.4 pyruvate kinase compare
Psyr_1091 -1.0 -3.7 aminopeptidase A, Metallo peptidase, MEROPS family M17 compare
Psyr_2245 -1.0 -1.9 conserved domain protein compare
Psyr_5131 -1.0 -2.7 16S rRNA m(7)G-527 methyltransferase compare
Psyr_5135 -1.0 -0.6 Protein of unknown function DUF37 compare
Psyr_0231 -1.0 -2.2 conserved hypothetical protein compare
Psyr_1955 -0.9 -2.1 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4151 -0.9 -1.1 Phosphocarrier HPr protein compare
Psyr_3681 -0.9 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_3202 -0.9 -1.9 NADH dehydrogenase subunit G compare
Psyr_1746 -0.9 -3.3 Trigger factor compare
Psyr_0176 -0.9 -1.7 conserved hypothetical protein compare
Psyr_0915 -0.9 -5.0 NAD-dependent epimerase/dehydratase compare
Psyr_3791 -0.9 -1.7 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_3636 -0.9 -5.9 Polysaccharide biosynthesis protein CapD compare
Psyr_0534 -0.9 -6.8 membrane protein, putative compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source D-Mannose in Pseudomonas syringae pv. syringae B728a

For carbon source D-Mannose across organisms