Experiment set7IT010 for Pseudomonas syringae pv. syringae B728a

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
Psyr_1984 -5.0 -4.8 3-isopropylmalate dehydratase, small subunit compare
Psyr_4894 -4.6 -7.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_1983 -4.6 -6.2 3-isopropylmalate dehydratase, large subunit compare
Psyr_1269 -4.2 -4.1 phosphoribosylformylglycinamidine synthase compare
Psyr_4134 -4.1 -8.6 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0469 -4.0 -7.1 dihydroxyacid dehydratase compare
Psyr_1663 -3.9 -3.8 phosphoribosylanthranilate isomerase compare
Psyr_0917 -3.9 -4.6 ABC-2 compare
Psyr_1985 -3.8 -8.4 3-isopropylmalate dehydrogenase compare
Psyr_0557 -3.8 -5.2 phosphoserine phosphatase compare
Psyr_4896 -3.8 -8.6 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4609 -3.8 -12.2 anthranilate synthase, component I compare
Psyr_0951 -3.7 -2.5 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4740 -3.7 -6.1 thiazole-phosphate synthase compare
Psyr_0846 -3.7 -10.9 acetolactate synthase, large subunit compare
Psyr_4270 -3.7 -8.3 serine hydroxymethyltransferase compare
Psyr_0827 -3.6 -4.9 pantothenate synthetase compare
Psyr_1257 -3.6 -10.7 2-isopropylmalate synthase compare
Psyr_4852 -3.5 -8.3 D-3-phosphoglycerate dehydrogenase compare
Psyr_0033 -3.5 -4.1 tryptophan synthase, alpha chain compare
Psyr_0918 -3.5 -11.0 ABC transporter compare
Psyr_0506 -3.5 -16.1 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase conserved
Psyr_0474 -3.5 -9.2 homoserine O-acetyltransferase compare
Psyr_4133 -3.4 -11.9 histidinol dehydrogenase compare
Psyr_0831 -3.4 -3.2 Two-component response regulator CbrB compare
Psyr_4893 -3.4 -1.9 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4132 -3.3 -10.7 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0473 -3.3 -6.8 Methionine biosynthesis MetW compare
Psyr_0847 -3.3 -8.0 acetolactate synthase, small subunit compare
Psyr_4754 -3.3 -2.2 16S rRNA m(2)G-966 methyltransferase compare
Psyr_1669 -3.3 -9.9 O-succinylhomoserine sulfhydrylase compare
Psyr_4897 -3.2 -4.8 imidazoleglycerol-phosphate dehydratase compare
Psyr_0034 -3.2 -4.4 tryptophan synthase, beta chain compare
Psyr_4844 -3.2 -11.3 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_1544 -3.1 -5.0 SirA-like protein compare
Psyr_1668 -3.1 -6.4 amidophosphoribosyltransferase compare
Psyr_4340 -2.9 -7.3 phosphomethylpyrimidine kinase, putative compare
Psyr_4909 -2.9 -12.7 gamma-aminobutyrate:proton symporter, AAT family conserved
Psyr_4580 -2.9 -4.4 anthranilate phosphoribosyltransferase compare
Psyr_3174 -2.8 -5.1 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_2462 -2.8 -6.3 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_4126 -2.8 -13.4 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_1148 -2.7 -7.2 branched chain amino acid aminotransferase apoenzyme compare
Psyr_4128 -2.7 -8.2 sulfate adenylyltransferase subunit 2 compare
Psyr_4341 -2.7 -7.2 thiamine-phosphate diphosphorylase compare
Psyr_0386 -2.6 -4.3 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0848 -2.6 -8.8 ketol-acid reductoisomerase compare
Psyr_0544 -2.6 -10.5 hydroxymethylpyrimidine synthase compare
Psyr_1963 -2.6 -7.8 Cyclic peptide transporter compare
Psyr_4091 -2.4 -5.1 8-oxo-dGTPase compare
Psyr_3293 -2.3 -3.1 UspA compare
Psyr_5133 -2.3 -3.6 tRNA modification GTPase trmE compare
Psyr_5132 -2.2 -3.2 Glucose-inhibited division protein A subfamily compare
Psyr_2077 -2.2 -5.3 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0385 -2.1 -3.4 phosphoribosyl-ATP pyrophosphatase compare
Psyr_4687 -2.1 -5.3 biotin synthase compare
Psyr_4581 -2.1 -1.6 anthranilate synthase, component II compare
Psyr_4920 -2.0 -3.0 conserved hypothetical bacteriophage protein compare
Psyr_2090 -2.0 -8.8 phosphoenolpyruvate synthase conserved
Psyr_3695 -2.0 -11.5 RelA/SpoT protein compare
Psyr_0822 -2.0 -2.3 1-phosphofructokinase compare
Psyr_1914 -2.0 -8.9 transaldolase compare
Psyr_4362 -2.0 -4.1 Rare lipoprotein A compare
Psyr_0232 -2.0 -9.9 gamma-glutamylputrescine oxidase compare
Psyr_0293 -1.9 -10.8 Polyphosphate kinase compare
Psyr_1910 -1.9 -5.9 VacJ-like lipoprotein compare
Psyr_1864 -1.9 -4.5 spermidine synthase compare
Psyr_0393 -1.9 -3.9 Protein of unknown function DUF971 compare
Psyr_4127 -1.8 -3.9 S23 ribosomal compare
Psyr_0603 -1.8 -5.9 N-acylglucosamine 2-epimerase compare
Psyr_4991 -1.8 -2.5 hypothetical protein compare
Psyr_1962 -1.7 -8.2 TonB-dependent siderophore receptor compare
Psyr_4019 -1.7 -3.7 H-NS family protein MvaT compare
Psyr_1816 -1.7 -4.2 transcriptional regulator, GntR family compare
Psyr_4140 -1.6 -2.8 Protein of unknown function DUF140 compare
Psyr_0576 -1.6 -2.0 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_0832 -1.6 -6.3 Two-component sensor kinase CbrA compare
Psyr_4407 -1.6 -2.2 phosphoribosylamine--glycine ligase compare
Psyr_0535 -1.5 -2.8 toluene tolerance protein, putative compare
Psyr_4882 -1.5 -6.1 protein translocase subunit secB compare
Psyr_4089 -1.5 -5.5 PAS compare
Psyr_0454 -1.5 -3.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0303 -1.5 -3.6 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_4277 -1.5 -5.4 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_3597 -1.5 -2.0 ABC transporter compare
Psyr_0835 -1.5 -4.6 transcriptional regulator, TraR/DksA family compare
Psyr_4940 -1.4 -1.8 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_4139 -1.4 -5.0 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_3284 -1.4 -2.6 SOS cell division inhibitor SulA compare
Psyr_0291 -1.4 -4.4 DedA compare
Psyr_1943 -1.4 -5.1 Sigma-70 region 2 compare
Psyr_4262 -1.4 -1.3 lipoprotein, putative compare
Psyr_4898 -1.4 -7.3 aromatic amino acid aminotransferase apoenzyme compare
Psyr_1749 -1.4 -5.6 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_4627 -1.4 -2.5 dimethyladenosine transferase compare
Psyr_2112 -1.4 -2.9 Protein with unknown function DUF469 compare
Psyr_1968 -1.4 -2.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0571 -1.4 -2.6 tRNA isopentenyltransferase compare
Psyr_2419 -1.4 -4.2 Protein of unknown function DUF480 compare
Psyr_2461 -1.4 -2.2 Uncharacterized conserved protein UCP030820 compare
Psyr_4416 -1.4 -3.2 precorrin-8X methylmutase compare
Psyr_3013 -1.4 -1.5 magnesium chelatase subunit ChlD compare
Psyr_1350 -1.3 -3.7 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1965 -1.3 -4.6 Twin-arginine translocation pathway signal compare
Psyr_1987 -1.3 -2.2 2-keto-3-deoxygalactonate kinase compare
Psyr_4686 -1.3 -3.6 8-amino-7-oxononanoate synthase compare
Psyr_2870 -1.3 -3.4 CDS compare
Psyr_1966 -1.3 -2.8 Peptidase M19, renal dipeptidase compare
Psyr_2855 -1.3 -3.1 methionine synthase (B12-independent) compare
Psyr_4843 -1.3 -3.9 NUDIX hydrolase compare
Psyr_2788 -1.3 -1.9 hypothetical protein compare
Psyr_3146 -1.3 -2.4 general secretion pathway protein J, putative compare
Psyr_1947 -1.3 -2.3 MbtH-like protein compare
Psyr_2974 -1.2 -5.8 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
Psyr_4451 -1.2 -3.1 UreE urease accessory, N-terminal:UreE urease accessory, C-terminal compare
Psyr_3446 -1.2 -2.2 Surface presentation of antigens (SPOA) protein compare
Psyr_0524 -1.2 -2.1 Lipopolysaccharide kinase compare
Psyr_4141 -1.2 -3.8 ABC transporter compare
Psyr_1748 -1.2 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4575 -1.2 -6.3 adenosylmethionine decarboxylase proenzyme compare
Psyr_4051 -1.2 -2.3 transcriptional regulator, ArsR family compare
Psyr_2872 -1.2 -2.3 hypothetical protein compare
Psyr_0259 -1.1 -2.5 Osmolarity sensor protein envZ compare
Psyr_4995 -1.1 -1.5 RHS protein compare
Psyr_3955 -1.1 -3.7 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_3104 -1.1 -2.2 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_0647 -1.1 -5.9 Protein of unknown function DUF726 compare
Psyr_0875 -1.1 -3.2 outer membrane transport energization protein TonB compare
Psyr_3690 -1.1 -3.7 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_1378 -1.1 -2.1 RecA protein compare
Psyr_5072 -1.1 -1.2 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2669 -1.1 -2.8 Aminoglycoside phosphotransferase compare
Psyr_3662 -1.1 -2.5 NAD(P)H dehydrogenase (quinone) compare
Psyr_1783 -1.1 -2.6 CDS compare
Psyr_3287 -1.1 -2.2 DNA topoisomerase I compare
Psyr_1949 -1.1 -1.6 ABC-3 compare
Psyr_1251 -1.1 -2.1 quinoprotein compare
Psyr_1751 -1.1 -3.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4087 -1.1 -1.3 Protein of unknown function DUF520 compare
Psyr_1953 -1.1 -1.1 conserved hypothetical protein compare
Psyr_4138 -1.1 -3.0 Toluene tolerance compare
Psyr_2464 -1.0 -5.2 methionine synthase (B12-dependent) compare
Psyr_3791 -1.0 -2.3 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_3462 -1.0 -2.0 conserved hypothetical protein compare
Psyr_4833 -1.0 -2.3 histidine ammonia-lyase compare
Psyr_0459 -1.0 -5.6 5,10-methylenetetrahydrofolate reductase compare
Psyr_3281 -1.0 -1.6 Glycoside hydrolase, family 3, N-terminal compare
Psyr_4596 -1.0 -2.6 conserved hypothetical protein compare
Psyr_3677 -1.0 -2.2 Aminotransferase, class I and II compare
Psyr_1449 -1.0 -2.2 hypothetical protein compare
Psyr_4155 -1.0 -1.7 Protein of unknown function DUF615 compare
Psyr_1952 -1.0 -2.3 hypothetical protein compare
Psyr_2984 -1.0 -1.7 conserved hypothetical protein compare
Psyr_4512 -1.0 -4.3 putative phage-related protein compare
Psyr_1247 -1.0 -1.6 conserved hypothetical protein compare
Psyr_0849 -1.0 -5.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_2562 -1.0 -1.8 hypothetical protein compare
Psyr_4070 -1.0 -3.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3688 -0.9 -1.9 conserved hypothetical protein compare
Psyr_2970 -0.9 -2.9 TPR repeat protein:TPR repeat protein compare
Psyr_3675 -0.9 -1.6 adenosylcobinamide kinase compare
Psyr_3020 -0.9 -0.8 precorrin-4 C11-methyltransferase compare
Psyr_3755 -0.9 -1.2 conserved hypothetical protein compare
Psyr_0238 -0.9 -5.2 Helix-turn-helix motif protein compare
Psyr_2593 -0.9 -2.5 ABC transporter compare
Psyr_1998 -0.9 -1.7 lipoprotein, putative compare
Psyr_4408 -0.9 -4.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2398 -0.9 -2.0 ABC transporter compare
Psyr_4386 -0.9 -3.1 conserved hypothetical protein compare
Psyr_2251 -0.9 -1.5 Phosphonate metabolism PhnG compare
Psyr_4727 -0.9 -2.4 glutathione S-transferase, putative compare
Psyr_4012 -0.9 -3.3 Glutaconate CoA-transferase compare
Psyr_4601 -0.9 -2.2 hypothetical protein compare
Psyr_0401 -0.9 -5.8 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) compare
Psyr_3018 -0.9 -2.2 membrane protein, putative compare
Psyr_2483 -0.9 -5.4 Acriflavin resistance protein compare
Psyr_1404 -0.9 -4.8 Ferritin and Dps compare
Psyr_1930 -0.9 -3.1 hypothetical protein compare
Psyr_3162 -0.9 -2.4 Metalloprotease inhibitor/calysin compare
Psyr_1270 -0.9 -1.2 conserved hypothetical protein compare
Psyr_0485 -0.9 -2.2 Protein of unknown function DUF179 compare
Psyr_3475 -0.9 -2.9 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_2414 -0.9 -2.0 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 compare
Psyr_3678 -0.9 -3.4 adenosylcobinamide-phosphate synthase compare
Psyr_3589 -0.9 -2.2 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1721 -0.8 -2.9 moxR protein, putative compare
Psyr_0087 -0.8 -3.3 Fatty acid desaturase compare
Psyr_4567 -0.8 -2.4 Protein of unknown function UPF0075 compare
Psyr_2808 -0.8 -1.1 hypothetical protein compare
Psyr_4228 -0.8 -4.8 transcriptional regulator, GntR family compare
Psyr_0820 -0.8 -3.7 transcriptional regulator, LacI family compare
Psyr_4335 -0.8 -1.2 transcriptional regulator, AsnC family compare
Psyr_1542 -0.8 -4.5 quinolinate synthetase compare
Psyr_0838 -0.8 -1.9 Rieske [2Fe-2S] region compare
Psyr_0217 -0.8 -3.0 conserved hypothetical protein compare
Psyr_2738 -0.8 -2.7 regulatory protein, LysR compare
Psyr_0168 -0.8 -3.8 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_0915 -0.8 -4.6 NAD-dependent epimerase/dehydratase compare
Psyr_0349 -0.8 -2.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2921 -0.8 -1.0 ADP-ribosylglycohydrolase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Proline in Pseudomonas syringae pv. syringae B728a

For carbon source L-Proline across organisms